Wall clock time and date at job start Tue Mar 31 2020 07:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00229 * 2 1 4 4 C 1.53115 * 109.52503 * 174.99875 * 3 2 1 5 5 C 1.53035 * 109.27961 * 177.55708 * 4 3 2 6 6 N 1.46846 * 109.51762 * 300.82523 * 5 4 3 7 7 C 1.46901 * 111.00131 * 185.83154 * 6 5 4 8 8 C 1.50702 * 109.46753 * 164.70850 * 7 6 5 9 9 C 1.37634 * 120.12850 * 104.16884 * 8 7 6 10 10 C 1.38611 * 120.24967 * 179.73949 * 9 8 7 11 11 C 1.38657 * 120.49903 * 0.51232 * 10 9 8 12 12 C 1.37603 * 120.24963 * 359.76349 * 11 10 9 13 13 C 1.40699 * 120.12488 * 284.43854 * 8 7 6 14 14 C 1.41398 * 120.24795 * 0.02562 * 13 8 7 15 15 H 1.07999 * 119.99820 * 330.62596 * 14 13 8 16 16 C 1.39945 * 119.99954 * 150.61982 * 14 13 8 17 17 N 1.30825 * 120.00080 * 348.82317 * 16 14 13 18 18 Si 1.86797 * 119.99884 * 168.82026 * 16 14 13 19 19 H 1.48494 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47169 * 120.00453 * 18 16 14 21 21 H 1.48505 * 109.46903 * 240.00300 * 18 16 14 22 22 C 1.46831 * 111.20678 * 61.74465 * 6 5 4 23 23 C 1.53033 * 109.51766 * 298.25583 * 22 6 5 24 24 H 1.08992 * 109.47237 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46946 * 300.00442 * 1 2 3 26 26 H 1.09003 * 109.46921 * 59.99920 * 1 2 3 27 27 H 1.09003 * 109.57544 * 54.84148 * 3 2 1 28 28 H 1.09000 * 109.50581 * 57.61855 * 4 3 2 29 29 H 1.08999 * 109.53801 * 297.52143 * 4 3 2 30 30 H 1.08998 * 109.46062 * 60.84116 * 5 4 3 31 31 H 1.09001 * 109.46302 * 180.81532 * 5 4 3 32 32 H 1.08995 * 109.47271 * 284.70898 * 7 6 5 33 33 H 1.09001 * 109.46686 * 44.70694 * 7 6 5 34 34 H 1.08002 * 119.87271 * 359.97438 * 9 8 7 35 35 H 1.07997 * 119.74931 * 180.25104 * 10 9 8 36 36 H 1.08001 * 119.87550 * 179.74447 * 11 10 9 37 37 H 1.07999 * 120.12379 * 180.02562 * 12 11 10 38 38 H 0.96997 * 120.00283 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46355 * 178.23265 * 22 6 5 40 40 H 1.09007 * 109.45038 * 58.26318 * 22 6 5 41 41 H 1.08997 * 109.50160 * 299.22854 * 23 22 6 42 42 H 1.09009 * 109.49896 * 179.12256 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7380 1.9427 0.1258 5 6 4.0813 3.4327 0.0639 6 7 3.6097 3.9924 -1.2091 7 6 4.0432 5.3874 -1.3637 8 6 3.8791 5.8080 -2.8015 9 6 2.8330 6.6243 -3.1674 10 6 2.6827 7.0170 -4.4882 11 6 3.5759 6.5851 -5.4568 12 6 4.6259 5.7640 -5.1148 13 6 4.7913 5.3632 -3.7759 14 6 5.8662 4.5193 -3.4129 15 1 6.2889 4.5797 -2.4208 16 6 6.3822 3.6057 -4.3389 17 7 5.7418 3.3742 -5.4559 18 14 7.9856 2.7170 -3.9801 19 1 8.5078 3.1518 -2.6597 20 1 7.7453 1.2517 -3.9588 21 1 8.9780 3.0406 -5.0364 22 6 2.1510 3.8784 -1.3316 23 6 1.7501 2.4016 -1.3113 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7280 2.2564 0.8397 28 1 4.2338 1.4207 -0.6926 29 1 4.0748 1.5308 1.0771 30 1 3.5964 3.9517 0.8907 31 1 5.1613 3.5600 0.1387 32 1 3.4359 6.0294 -0.7257 33 1 5.0909 5.4762 -1.0764 34 1 2.1288 6.9631 -2.4219 35 1 1.8613 7.6609 -4.7656 36 1 3.4469 6.8940 -6.4836 37 1 5.3206 5.4291 -5.8708 38 1 6.0996 2.7413 -6.0979 39 1 1.8289 4.3294 -2.2701 40 1 1.6753 4.3953 -0.4981 41 1 2.2145 1.8869 -2.1524 42 1 0.6658 2.3179 -1.3865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235522832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:18 Heat of formation + Delta-G solvation = -0.858207 kcal Electronic energy + Delta-G solvation = -21567.772826 eV Core-core repulsion = 18637.332522 eV Total energy + Delta-G solvation = -2930.440304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -40.24525 -38.92807 -35.37353 -34.87009 -32.02576 -31.64082 -31.08430 -29.68363 -27.53615 -26.49076 -24.06159 -23.88532 -22.71160 -21.17959 -20.76964 -18.93711 -17.61815 -17.18433 -16.55125 -16.30368 -15.99803 -15.69723 -15.30108 -15.19158 -14.89502 -14.65565 -14.57481 -14.31912 -14.16139 -13.60262 -13.37024 -13.23307 -13.13428 -12.83580 -12.74929 -12.55587 -12.37634 -12.23037 -12.14170 -12.04637 -11.66377 -11.40740 -11.27403 -11.00139 -10.98250 -10.68524 -9.17955 -9.11078 -8.89861 -8.67228 -8.45976 -6.14753 0.74539 1.05009 1.17731 1.40917 1.53140 1.55848 1.66960 2.27535 2.89545 3.18109 3.68848 3.71906 3.92069 4.09769 4.20400 4.32406 4.34842 4.36826 4.38652 4.49627 4.53258 4.57520 4.65931 4.69985 4.78157 4.79621 4.86009 4.91960 5.01301 5.08555 5.12275 5.15552 5.32493 5.36382 5.43864 5.60931 5.86017 6.08310 6.20916 6.27462 6.40667 6.48030 6.56673 6.84761 7.13053 7.19899 8.51090 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.005837 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.232101 B = 4795.685596 C = 5931.210238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.315 6.315 3 C -0.032 4.032 4 C -0.090 4.090 5 C 0.066 3.934 6 N -0.538 5.538 7 C 0.137 3.863 8 C -0.190 4.190 9 C -0.093 4.093 10 C -0.242 4.242 11 C -0.117 4.117 12 C -0.190 4.190 13 C 0.102 3.898 14 C -0.452 4.452 15 H 0.074 0.926 16 C 0.035 3.965 17 N -0.839 5.839 18 Si 0.967 3.033 19 H -0.256 1.256 20 H -0.276 1.276 21 H -0.271 1.271 22 C 0.070 3.930 23 C -0.101 4.101 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.279 0.721 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.051 0.949 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 -3.129 11.440 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.086 6.086 3 C -0.160 4.160 4 C -0.129 4.129 5 C -0.063 4.063 6 N -0.263 5.263 7 C 0.010 3.990 8 C -0.192 4.192 9 C -0.112 4.112 10 C -0.261 4.261 11 C -0.136 4.136 12 C -0.210 4.210 13 C 0.099 3.901 14 C -0.483 4.483 15 H 0.092 0.908 16 C -0.177 4.177 17 N -0.466 5.466 18 Si 0.789 3.211 19 H -0.179 1.179 20 H -0.201 1.201 21 H -0.196 1.196 22 C -0.060 4.060 23 C -0.140 4.140 24 H 0.130 0.870 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.568 -4.488 10.903 13.497 hybrid contribution -0.396 0.928 -0.039 1.009 sum -6.964 -3.560 10.864 13.386 Atomic orbital electron populations 1.23414 0.91260 1.07337 1.05695 1.87008 1.10773 1.12844 1.97997 1.23115 1.00083 0.92198 1.00607 1.21349 0.92594 0.96347 1.02610 1.22038 1.00519 0.94022 0.89770 1.61690 1.11668 1.19223 1.33688 1.20454 0.99096 0.86981 0.92472 1.19855 0.97972 1.05588 0.95788 1.20701 0.96908 0.97948 0.95630 1.20675 1.03049 1.08678 0.93691 1.20931 0.96084 0.98441 0.98139 1.21332 1.00335 1.01531 0.97785 1.17699 0.91456 0.89662 0.91233 1.19543 1.13774 1.16181 0.98755 0.90829 1.26531 1.00194 0.97028 0.93938 1.69892 1.37593 1.29959 1.09202 0.85380 0.78245 0.77928 0.79510 1.17904 1.20148 1.19579 1.21922 0.87826 0.95805 1.00413 1.21794 1.00564 0.95292 0.96390 0.87026 0.89193 0.90174 0.88330 0.92796 0.89306 0.93703 0.90803 0.94733 0.91953 0.87028 0.87044 0.88121 0.88764 0.91101 0.92376 0.94175 0.92982 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 10.47 113.37 1.19 -0.69 16 2 S -0.31 -7.97 21.80 -56.49 -1.23 -9.21 16 3 C -0.03 -0.80 2.72 30.67 0.08 -0.72 16 4 C -0.09 -2.51 5.39 30.64 0.17 -2.34 16 5 C 0.07 1.94 5.45 86.33 0.47 2.41 16 6 N -0.54 -19.52 4.54 -900.98 -4.09 -23.61 16 7 C 0.14 5.23 4.45 85.56 0.38 5.61 16 8 C -0.19 -8.66 4.71 -19.40 -0.09 -8.75 16 9 C -0.09 -3.92 8.93 22.22 0.20 -3.72 16 10 C -0.24 -10.41 10.05 22.46 0.23 -10.18 16 11 C -0.12 -5.56 10.02 22.22 0.22 -5.34 16 12 C -0.19 -10.15 8.65 22.73 0.20 -9.96 16 13 C 0.10 5.36 5.54 -21.29 -0.12 5.25 16 14 C -0.45 -23.76 8.36 23.46 0.20 -23.57 16 15 H 0.07 3.75 6.64 -2.91 -0.02 3.73 16 16 C 0.04 1.82 5.24 85.26 0.45 2.27 16 17 N -0.84 -45.53 10.91 21.83 0.24 -45.29 16 18 Si 0.97 40.03 29.57 68.60 2.03 42.06 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 22 C 0.07 2.27 5.30 86.33 0.46 2.73 16 23 C -0.10 -2.95 5.26 30.64 0.16 -2.78 16 24 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.36 7.23 -2.39 -0.02 1.35 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 2.22 7.96 -2.39 -0.02 2.21 16 32 H 0.03 1.17 7.88 -2.39 -0.02 1.15 16 33 H 0.06 2.46 6.73 -2.39 -0.02 2.44 16 34 H 0.11 3.98 8.00 -2.91 -0.02 3.96 16 35 H 0.11 4.12 8.06 -2.91 -0.02 4.09 16 36 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.09 5.36 6.29 -2.91 -0.02 5.34 16 38 H 0.28 13.98 8.30 -92.71 -0.77 13.22 16 39 H 0.06 2.19 6.74 -2.39 -0.02 2.18 16 40 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.08 1.95 7.06 -2.38 -0.02 1.93 16 Total: -1.00 -59.41 342.77 2.11 -57.29 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.98 Total: 28.54 kcal Atomic # 6 Polarization: -53.97 SS G_CDS: 4.18 Total: -49.78 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -3.85 Total: -68.90 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.23 Total: -9.21 kcal Total: -59.41 2.11 -57.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.434 kcal (2) G-P(sol) polarization free energy of solvation -59.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds