Wall clock time and date at job start Tue Mar 31 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46798 * 2 1 4 4 N 1.46899 * 109.47021 * 176.68169 * 3 2 1 5 5 C 1.46903 * 111.00087 * 59.00140 * 4 3 2 6 6 C 1.50701 * 109.46626 * 66.04968 * 5 4 3 7 7 H 1.07999 * 120.00193 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99729 * 180.02562 * 6 5 4 9 9 N 1.31523 * 120.00033 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00221 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46940 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47447 * 119.99608 * 10 8 6 13 13 H 1.48496 * 109.47206 * 239.99532 * 10 8 6 14 14 C 1.46900 * 110.99852 * 295.04984 * 4 3 2 15 15 C 1.50702 * 109.46945 * 287.81268 * 14 4 3 16 16 N 1.30078 * 124.95606 * 275.32916 * 15 14 4 17 17 C 1.35839 * 109.64756 * 179.97438 * 16 15 14 18 18 C 1.39733 * 133.55705 * 180.02562 * 17 16 15 19 19 C 1.36583 * 119.91875 * 180.25893 * 18 17 16 20 20 C 1.38974 * 120.64059 * 359.42194 * 19 18 17 21 21 F 1.35105 * 119.80149 * 180.29623 * 20 19 18 22 22 C 1.38051 * 120.40131 * 0.61353 * 20 19 18 23 23 C 1.38840 * 119.66913 * 359.68207 * 22 20 19 24 24 N 1.36098 * 124.95110 * 95.29852 * 15 14 4 25 25 H 0.97001 * 126.34665 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47314 * 60.00298 * 1 2 3 27 27 H 1.09004 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47097 * 299.99625 * 1 2 3 29 29 H 1.08997 * 109.47077 * 240.00349 * 2 1 3 30 30 H 1.08994 * 109.47314 * 119.99702 * 2 1 3 31 31 H 1.08998 * 109.47013 * 56.67642 * 3 2 1 32 32 H 1.09006 * 109.46766 * 296.68063 * 3 2 1 33 33 H 1.08996 * 109.47160 * 186.04576 * 5 4 3 34 34 H 1.08998 * 109.46966 * 306.05190 * 5 4 3 35 35 H 0.96994 * 119.99876 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46974 * 167.81583 * 14 4 3 37 37 H 1.09001 * 109.47316 * 47.81155 * 14 4 3 38 38 H 1.08006 * 120.03932 * 359.97438 * 18 17 16 39 39 H 1.08006 * 119.67992 * 179.72448 * 19 18 17 40 40 H 1.07994 * 120.16967 * 179.66360 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5067 1.4434 0.0802 5 6 4.0962 0.7148 -1.0511 6 6 3.8067 1.4555 -2.3312 7 1 3.2411 2.3752 -2.3068 8 6 4.2632 0.9585 -3.5335 9 7 4.9516 -0.1617 -3.5632 10 14 3.9038 1.8762 -5.1204 11 1 3.1174 3.0989 -4.8178 12 1 5.1824 2.2581 -5.7719 13 1 3.1255 1.0008 -6.0331 14 6 3.9643 0.8871 1.3605 15 6 3.6771 1.8697 2.4664 16 7 4.4485 2.8626 2.8000 17 6 3.8913 3.5467 3.8329 18 6 4.2821 4.6705 4.5656 19 6 3.4904 5.1327 5.5781 20 6 2.2894 4.5028 5.8820 21 9 1.5166 4.9779 6.8832 22 6 1.8845 3.3907 5.1714 23 6 2.6807 2.9047 4.1431 24 7 2.5727 1.8481 3.2613 25 1 1.8444 1.2090 3.2163 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6287 1.9733 0.8587 32 1 1.7259 1.9389 -0.9183 33 1 5.1745 0.6381 -0.9116 34 1 3.6646 -0.2847 -1.1041 35 1 5.2730 -0.5112 -4.4090 36 1 5.0366 0.6979 1.3119 37 1 3.4391 -0.0472 1.5591 38 1 5.2112 5.1704 4.3346 39 1 3.7983 5.9990 6.1449 40 1 0.9531 2.9009 5.4143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235696139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:27 Heat of formation + Delta-G solvation = 24.547156 kcal Electronic energy + Delta-G solvation = -22751.416524 eV Core-core repulsion = 19288.157454 eV Total energy + Delta-G solvation = -3463.259070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 4.49 seconds Orbital eigenvalues (eV) -48.98899 -42.13492 -37.93424 -36.79460 -33.19479 -32.87884 -32.27833 -30.28944 -29.62642 -27.41989 -26.46484 -24.32683 -22.74084 -22.30579 -22.17899 -20.97062 -19.47805 -18.30022 -17.47013 -16.58540 -16.23764 -15.89679 -15.49643 -15.36734 -15.04645 -14.62792 -14.48777 -14.13049 -13.89214 -13.55736 -13.28766 -13.13528 -12.86514 -12.21194 -11.87196 -11.59957 -11.59611 -11.44005 -11.28249 -11.09711 -11.01097 -10.74960 -10.65414 -10.60022 -10.06045 -9.94031 -9.87154 -9.29137 -8.56322 -8.48464 -8.05648 -7.37312 -6.07910 -4.08686 0.74910 1.28689 2.69959 2.82183 3.28653 3.36876 3.41591 3.68941 4.11312 4.23175 4.39297 4.49956 4.83430 4.87383 5.12305 5.15547 5.21958 5.27867 5.30553 5.33629 5.53662 5.63870 5.68196 5.79497 5.84644 5.91622 6.03952 6.07921 6.19163 6.20159 6.31126 6.43020 6.56552 6.73311 6.75760 7.14992 7.24048 7.29610 7.70622 7.93015 8.01259 8.05479 8.41592 8.98134 9.55590 11.02854 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.003560 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.926621 B = 7862.413857 C = 8372.811051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.166 4.166 3 C 0.063 3.937 4 N -0.523 5.523 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.285 1.285 14 C 0.119 3.881 15 C 0.322 3.678 16 N -0.473 5.473 17 C 0.043 3.957 18 C -0.033 4.033 19 C -0.163 4.163 20 C 0.106 3.894 21 F -0.140 7.140 22 C -0.146 4.146 23 C 0.066 3.934 24 N -0.597 5.597 25 H 0.422 0.578 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.003 0.997 35 H 0.261 0.739 36 H 0.107 0.893 37 H 0.053 0.947 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.717 3.262 16.658 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.205 4.205 3 C -0.066 4.066 4 N -0.247 5.247 5 C 0.067 3.933 6 C -0.543 4.543 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.212 1.212 14 C -0.011 4.011 15 C 0.054 3.946 16 N -0.192 5.192 17 C -0.076 4.076 18 C -0.052 4.052 19 C -0.184 4.184 20 C 0.085 3.915 21 F -0.118 7.118 22 C -0.168 4.168 23 C -0.046 4.046 24 N -0.208 5.208 25 H 0.260 0.740 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.071 0.929 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.643 3.909 16.153 17.551 hybrid contribution -1.779 -0.884 -0.361 2.019 sum -7.422 3.025 15.792 17.709 Atomic orbital electron populations 1.21663 0.96277 1.00916 1.01280 1.22215 0.95671 1.00107 1.02482 1.22127 0.88185 0.94473 1.01768 1.62295 1.06671 1.55155 1.00566 1.19858 0.94960 0.92074 0.86419 1.21123 1.34395 1.08523 0.90270 0.91846 1.24950 0.95230 0.95081 0.99185 1.69955 1.37158 1.20327 1.26302 0.86461 0.78086 0.79814 0.83200 1.19677 1.20957 1.21176 1.20706 1.03048 0.90471 0.86895 1.23937 0.82304 0.95671 0.92648 1.70547 1.29660 1.06098 1.12939 1.19250 0.92975 0.98219 0.97143 1.19868 0.99567 0.93129 0.92684 1.20558 0.94378 1.02669 1.00781 1.17101 0.90832 0.94960 0.88606 1.91487 1.74406 1.87648 1.58290 1.19640 1.01330 0.98491 0.97388 1.18411 0.98531 0.92273 0.95379 1.43250 1.22030 1.26318 1.29216 0.73963 0.92492 0.93325 0.93776 0.89833 0.93279 0.93646 0.89537 0.94829 0.97905 0.92938 0.87452 0.92934 0.84219 0.84277 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.17 -2.57 5.26 -26.73 -0.14 -2.71 16 3 C 0.06 1.11 5.01 -3.82 -0.02 1.09 16 4 N -0.52 -10.41 4.65 -237.51 -1.10 -11.51 16 5 C 0.19 4.58 4.45 -4.97 -0.02 4.56 16 6 C -0.50 -13.49 8.53 -34.44 -0.29 -13.78 16 7 H 0.06 1.71 7.10 -52.49 -0.37 1.34 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.62 13.29 55.43 0.74 -24.88 16 10 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.12 1.95 5.49 -4.98 -0.03 1.93 16 15 C 0.32 5.10 6.83 -154.79 -1.06 4.04 16 16 N -0.47 -8.35 11.27 -8.22 -0.09 -8.45 16 17 C 0.04 0.66 7.23 -84.68 -0.61 0.05 16 18 C -0.03 -0.41 10.04 -39.62 -0.40 -0.81 16 19 C -0.16 -1.75 9.94 -39.91 -0.40 -2.15 16 20 C 0.11 1.22 7.29 -39.38 -0.29 0.93 16 21 F -0.14 -1.60 17.26 2.25 0.04 -1.56 16 22 C -0.15 -1.70 10.05 -39.43 -0.40 -2.10 16 23 C 0.07 0.89 7.30 -83.99 -0.61 0.28 16 24 N -0.60 -7.69 5.76 -8.00 -0.05 -7.74 16 25 H 0.42 4.17 8.96 -40.82 -0.37 3.81 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.56 6.44 -51.93 -0.33 1.23 16 30 H 0.05 0.68 6.16 -51.93 -0.32 0.36 16 31 H 0.05 0.72 7.00 -51.93 -0.36 0.36 16 32 H 0.09 1.71 6.88 -51.93 -0.36 1.36 16 33 H 0.03 0.88 7.86 -51.93 -0.41 0.47 16 34 H 0.00 0.08 6.04 -51.93 -0.31 -0.23 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.11 1.81 7.81 -51.93 -0.41 1.41 16 37 H 0.05 0.75 5.91 -51.93 -0.31 0.44 16 38 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 332.95 15.07 5.02 5.02 Total: -1.00 -30.07 332.95 -9.68 -39.75 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.22 Total: 1.90 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -3.99 Total: -8.68 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.51 Total: -52.58 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.07 -9.68 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235696139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.301 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.49 seconds