Wall clock time and date at job start Tue Mar 31 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46798 * 2 1 4 4 N 1.46899 * 109.47021 * 176.68169 * 3 2 1 5 5 C 1.46903 * 111.00087 * 59.00140 * 4 3 2 6 6 C 1.50701 * 109.46626 * 66.04968 * 5 4 3 7 7 H 1.07999 * 120.00193 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99729 * 180.02562 * 6 5 4 9 9 N 1.31523 * 120.00033 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00221 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46940 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47447 * 119.99608 * 10 8 6 13 13 H 1.48496 * 109.47206 * 239.99532 * 10 8 6 14 14 C 1.46900 * 110.99852 * 295.04984 * 4 3 2 15 15 C 1.50702 * 109.46945 * 287.81268 * 14 4 3 16 16 N 1.30078 * 124.95606 * 275.32916 * 15 14 4 17 17 C 1.35839 * 109.64756 * 179.97438 * 16 15 14 18 18 C 1.39733 * 133.55705 * 180.02562 * 17 16 15 19 19 C 1.36583 * 119.91875 * 180.25893 * 18 17 16 20 20 C 1.38974 * 120.64059 * 359.42194 * 19 18 17 21 21 F 1.35105 * 119.80149 * 180.29623 * 20 19 18 22 22 C 1.38051 * 120.40131 * 0.61353 * 20 19 18 23 23 C 1.38840 * 119.66913 * 359.68207 * 22 20 19 24 24 N 1.36098 * 124.95110 * 95.29852 * 15 14 4 25 25 H 0.97001 * 126.34665 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47314 * 60.00298 * 1 2 3 27 27 H 1.09004 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47097 * 299.99625 * 1 2 3 29 29 H 1.08997 * 109.47077 * 240.00349 * 2 1 3 30 30 H 1.08994 * 109.47314 * 119.99702 * 2 1 3 31 31 H 1.08998 * 109.47013 * 56.67642 * 3 2 1 32 32 H 1.09006 * 109.46766 * 296.68063 * 3 2 1 33 33 H 1.08996 * 109.47160 * 186.04576 * 5 4 3 34 34 H 1.08998 * 109.46966 * 306.05190 * 5 4 3 35 35 H 0.96994 * 119.99876 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46974 * 167.81583 * 14 4 3 37 37 H 1.09001 * 109.47316 * 47.81155 * 14 4 3 38 38 H 1.08006 * 120.03932 * 359.97438 * 18 17 16 39 39 H 1.08006 * 119.67992 * 179.72448 * 19 18 17 40 40 H 1.07994 * 120.16967 * 179.66360 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5067 1.4434 0.0802 5 6 4.0962 0.7148 -1.0511 6 6 3.8067 1.4555 -2.3312 7 1 3.2411 2.3752 -2.3068 8 6 4.2632 0.9585 -3.5335 9 7 4.9516 -0.1617 -3.5632 10 14 3.9038 1.8762 -5.1204 11 1 3.1174 3.0989 -4.8178 12 1 5.1824 2.2581 -5.7719 13 1 3.1255 1.0008 -6.0331 14 6 3.9643 0.8871 1.3605 15 6 3.6771 1.8697 2.4664 16 7 4.4485 2.8626 2.8000 17 6 3.8913 3.5467 3.8329 18 6 4.2821 4.6705 4.5656 19 6 3.4904 5.1327 5.5781 20 6 2.2894 4.5028 5.8820 21 9 1.5166 4.9779 6.8832 22 6 1.8845 3.3907 5.1714 23 6 2.6807 2.9047 4.1431 24 7 2.5727 1.8481 3.2613 25 1 1.8444 1.2090 3.2163 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6287 1.9733 0.8587 32 1 1.7259 1.9389 -0.9183 33 1 5.1745 0.6381 -0.9116 34 1 3.6646 -0.2847 -1.1041 35 1 5.2730 -0.5112 -4.4090 36 1 5.0366 0.6979 1.3119 37 1 3.4391 -0.0472 1.5591 38 1 5.2112 5.1704 4.3346 39 1 3.7983 5.9990 6.1449 40 1 0.9531 2.9009 5.4143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235696139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:20 Heat of formation + Delta-G solvation = 5.956868 kcal Electronic energy + Delta-G solvation = -22752.222659 eV Core-core repulsion = 19288.157454 eV Total energy + Delta-G solvation = -3464.065205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -49.89048 -43.20993 -39.32773 -37.88629 -34.83452 -34.26044 -33.63707 -31.39247 -30.83305 -29.02059 -27.77680 -25.94754 -23.87899 -23.68326 -23.21954 -22.22293 -20.89211 -19.28532 -18.56913 -18.31752 -17.47352 -17.14293 -16.72486 -16.49521 -16.31877 -16.08619 -15.85332 -15.29563 -15.04155 -14.99504 -14.38151 -14.21624 -14.11830 -13.83256 -13.31655 -13.04182 -12.79260 -12.67860 -12.57936 -12.50409 -12.40294 -12.39236 -12.25597 -11.86662 -11.74946 -11.39156 -11.26542 -11.01518 -10.57819 -9.52051 -9.11619 -8.94768 -8.17803 -6.25453 -0.24230 0.34485 1.40275 1.42560 1.53739 1.59104 1.77789 2.42007 2.67826 3.03362 3.15587 3.29669 3.38787 3.55704 3.96445 3.99947 4.07062 4.15189 4.17506 4.27069 4.32400 4.43225 4.56441 4.65704 4.71427 4.81859 4.95630 5.01429 5.07158 5.10061 5.16517 5.21673 5.32649 5.41577 5.44721 5.48759 5.67662 5.80335 6.06072 6.30037 6.32050 6.57669 6.87727 6.89437 7.43033 8.92730 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.003560 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.926621 B = 7862.413857 C = 8372.811051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C 0.069 3.931 4 N -0.540 5.540 5 C 0.209 3.791 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.278 1.278 14 C 0.125 3.875 15 C 0.311 3.689 16 N -0.512 5.512 17 C 0.008 3.992 18 C -0.043 4.043 19 C -0.150 4.150 20 C 0.107 3.893 21 F -0.136 7.136 22 C -0.143 4.143 23 C 0.063 3.937 24 N -0.581 5.581 25 H 0.436 0.564 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.004 0.996 34 H -0.008 1.008 35 H 0.263 0.737 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 4.079 18.344 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C -0.059 4.059 4 N -0.264 5.264 5 C 0.083 3.917 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.203 1.203 14 C -0.005 4.005 15 C 0.043 3.957 16 N -0.232 5.232 17 C -0.110 4.110 18 C -0.062 4.062 19 C -0.171 4.171 20 C 0.086 3.914 21 F -0.115 7.115 22 C -0.165 4.165 23 C -0.049 4.049 24 N -0.193 5.193 25 H 0.278 0.722 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.022 0.978 34 H 0.010 0.990 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.168 0.832 39 H 0.186 0.814 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.519 4.722 17.862 19.947 hybrid contribution -1.214 -1.058 -0.731 1.768 sum -8.732 3.664 17.132 19.575 Atomic orbital electron populations 1.21627 0.93796 1.02129 1.02053 1.22085 0.97794 0.98169 1.01558 1.22064 0.86759 0.95897 1.01230 1.62078 1.08171 1.55243 1.00863 1.19442 0.93243 0.91661 0.87354 1.21404 1.33987 1.08317 0.91751 0.92655 1.25741 0.95082 0.95864 1.02403 1.70059 1.38174 1.21688 1.27166 0.85474 0.77948 0.78724 0.79325 1.19253 1.20683 1.20346 1.20583 1.02593 0.91710 0.85570 1.23479 0.83466 0.95626 0.93147 1.70435 1.31214 1.07167 1.14401 1.19665 0.94172 0.99602 0.97570 1.20097 1.00449 0.92700 0.92943 1.20844 0.93532 1.02904 0.99818 1.17249 0.90943 0.94848 0.88380 1.91504 1.74330 1.87560 1.58102 1.19861 1.01883 0.98390 0.96383 1.18554 0.98315 0.92184 0.95844 1.43028 1.21555 1.26392 1.28372 0.72223 0.93457 0.91913 0.91274 0.93635 0.91258 0.91448 0.92368 0.97788 0.99021 0.92770 0.88759 0.90420 0.83198 0.81372 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.91 71.98 0.71 -2.54 16 2 C -0.16 -4.76 5.26 30.60 0.16 -4.60 16 3 C 0.07 2.40 5.01 86.30 0.43 2.83 16 4 N -0.54 -22.00 4.65 -905.35 -4.21 -26.21 16 5 C 0.21 10.44 4.45 85.56 0.38 10.82 16 6 C -0.52 -28.49 8.53 25.60 0.22 -28.27 16 7 H 0.06 3.08 7.10 -2.91 -0.02 3.06 16 8 C 0.01 0.41 5.46 84.65 0.46 0.87 16 9 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 10 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 14 C 0.13 4.15 5.49 85.56 0.47 4.62 16 15 C 0.31 9.73 6.83 137.91 0.94 10.67 16 16 N -0.51 -18.19 11.27 -179.91 -2.03 -20.21 16 17 C 0.01 0.25 7.23 39.44 0.29 0.54 16 18 C -0.04 -1.00 10.04 22.24 0.22 -0.78 16 19 C -0.15 -2.83 9.94 22.06 0.22 -2.61 16 20 C 0.11 2.13 7.29 22.40 0.16 2.30 16 21 F -0.14 -2.67 17.26 44.97 0.78 -1.89 16 22 C -0.14 -2.90 10.05 22.37 0.22 -2.67 16 23 C 0.06 1.58 7.30 38.86 0.28 1.86 16 24 N -0.58 -13.91 5.76 -179.21 -1.03 -14.95 16 25 H 0.44 7.42 8.96 -92.71 -0.83 6.59 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.31 8.14 -2.38 -0.02 1.30 16 28 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.04 1.74 6.44 -2.39 -0.02 1.72 16 30 H 0.07 1.80 6.16 -2.39 -0.01 1.78 16 31 H 0.07 2.05 7.00 -2.39 -0.02 2.03 16 32 H 0.06 2.35 6.88 -2.38 -0.02 2.34 16 33 H 0.00 0.22 7.86 -2.39 -0.02 0.20 16 34 H -0.01 -0.40 6.04 -2.39 -0.01 -0.42 16 35 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 36 H 0.09 3.34 7.81 -2.39 -0.02 3.32 16 37 H 0.08 2.14 5.91 -2.39 -0.01 2.13 16 38 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 39 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -66.71 332.95 1.24 -65.47 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.24 Total: 12.81 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.18 Total: -6.96 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -6.98 Total: -115.49 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.71 1.24 -65.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235696139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.425 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds