Wall clock time and date at job start Tue Mar 31 2020 07:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00141 * 2 1 4 4 H 1.48499 * 109.46937 * 240.00368 * 3 2 1 5 5 H 1.48503 * 109.46960 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47022 * 120.00365 * 3 2 1 7 7 C 1.37880 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46693 * 180.02562 * 9 7 2 11 11 C 1.38262 * 119.94473 * 90.00390 * 10 9 7 12 12 C 1.38137 * 120.05561 * 179.97438 * 11 10 9 13 13 C 1.38731 * 119.94460 * 359.97438 * 12 11 10 14 14 O 1.35907 * 120.05551 * 180.02562 * 13 12 11 15 15 C 1.42899 * 116.99792 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47129 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.46945 * 64.74328 * 16 15 14 18 18 C 1.47015 * 110.99966 * 199.38661 * 17 16 15 19 19 C 1.53093 * 109.25962 * 177.60564 * 18 17 16 20 20 O 1.43019 * 109.25922 * 56.84744 * 19 18 17 21 21 C 1.43016 * 113.73519 * 301.32913 * 20 19 18 22 22 C 1.47013 * 111.00233 * 75.74589 * 17 16 15 23 23 C 1.38735 * 119.89137 * 0.27972 * 13 12 11 24 24 C 1.38146 * 119.93420 * 359.42109 * 23 13 12 25 25 H 0.97001 * 119.99884 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46805 * 60.00155 * 9 7 2 27 27 H 1.08995 * 109.46915 * 300.00063 * 9 7 2 28 28 H 1.07999 * 119.97313 * 0.02562 * 11 10 9 29 29 H 1.08002 * 120.03129 * 179.97438 * 12 11 10 30 30 H 1.08996 * 109.47254 * 60.00281 * 15 14 13 31 31 H 1.08999 * 109.47337 * 300.00298 * 15 14 13 32 32 H 1.08997 * 109.46964 * 304.74137 * 16 15 14 33 33 H 1.08998 * 109.47435 * 184.73904 * 16 15 14 34 34 H 1.09006 * 109.50570 * 297.53988 * 18 17 16 35 35 H 1.08997 * 109.50913 * 57.66685 * 18 17 16 36 36 H 1.08998 * 109.50713 * 296.90971 * 19 18 17 37 37 H 1.08999 * 109.54479 * 176.80066 * 19 18 17 38 38 H 1.08997 * 109.50776 * 298.73365 * 21 20 19 39 39 H 1.09000 * 109.53924 * 178.63065 * 21 20 19 40 40 H 1.09001 * 109.50880 * 302.32491 * 22 17 16 41 41 H 1.08997 * 109.50366 * 62.41798 * 22 17 16 42 42 H 1.07988 * 120.03063 * 179.72229 * 23 13 12 43 43 H 1.08002 * 119.96659 * 180.27574 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6788 -4.1692 1.1975 12 6 3.5761 -5.2195 1.2002 13 6 4.0269 -5.7482 -0.0006 14 8 4.9093 -6.7819 -0.0006 15 6 5.3305 -7.2752 -1.2738 16 6 6.3149 -8.4293 -1.0734 17 7 5.6265 -9.5527 -0.4238 18 6 6.5904 -10.4742 0.1952 19 6 5.8304 -11.5947 0.9099 20 8 4.9739 -12.2552 -0.0259 21 6 4.0221 -11.3873 -0.6472 22 6 4.7637 -10.2647 -1.3777 23 6 3.5795 -5.2166 -1.2014 24 6 2.6774 -4.1704 -1.1986 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.3266 -3.7581 2.1320 29 1 3.9265 -5.6287 2.1363 30 1 5.8173 -6.4746 -1.8308 31 1 4.4635 -7.6302 -1.8309 32 1 7.1412 -8.0970 -0.4450 33 1 6.7005 -8.7501 -2.0411 34 1 7.2307 -10.9030 -0.5757 35 1 7.2014 -9.9314 0.9163 36 1 5.2310 -11.1713 1.7159 37 1 6.5404 -12.3115 1.3222 38 1 3.3702 -10.9579 0.1135 39 1 3.4243 -11.9535 -1.3614 40 1 4.0414 -9.5689 -1.8047 41 1 5.3748 -10.6894 -2.1741 42 1 3.9324 -5.6235 -2.1374 43 1 2.3254 -3.7591 -2.1331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250054401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:51 Heat of formation + Delta-G solvation = -58.708509 kcal Electronic energy + Delta-G solvation = -22535.599773 eV Core-core repulsion = 19159.898020 eV Total energy + Delta-G solvation = -3375.701753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03588 -39.42641 -37.33098 -35.94838 -33.18518 -31.57703 -31.15177 -30.35984 -30.00741 -26.87829 -26.23827 -24.37269 -23.23486 -22.87547 -21.38896 -20.72848 -20.10080 -17.84179 -17.08315 -16.47459 -16.28179 -15.84808 -15.42720 -15.36257 -15.12768 -14.89328 -14.78003 -14.19375 -14.01653 -13.56830 -13.11711 -12.86206 -12.81637 -12.50859 -12.42337 -12.04720 -11.81450 -11.70347 -11.45082 -11.27511 -11.13119 -10.86580 -10.62092 -10.57287 -10.46030 -10.11934 -9.97157 -9.51828 -9.34718 -8.69756 -8.41051 -8.34857 -7.30938 -6.02045 -4.06167 1.99601 2.18591 3.32647 3.33484 3.36656 3.40016 3.47296 3.57751 4.38714 4.52300 4.56316 4.60177 4.61420 4.82142 4.83760 4.98335 5.02252 5.13213 5.17096 5.24472 5.31522 5.33032 5.42292 5.43147 5.45570 5.53932 5.56788 5.65094 5.95367 6.08254 6.19338 6.34905 6.59367 6.61277 6.63325 6.81855 6.91129 7.17556 7.20516 7.41913 7.58351 7.88514 7.93592 7.94412 8.35253 8.99138 9.57503 11.07302 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037761 B = 0.002559 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.322089 B =10937.808342 C =11095.173852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.051 3.949 10 C -0.068 4.068 11 C -0.087 4.087 12 C -0.151 4.151 13 C 0.096 3.904 14 O -0.306 6.306 15 C 0.069 3.931 16 C 0.057 3.943 17 N -0.529 5.529 18 C 0.019 3.981 19 C 0.063 3.937 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.015 3.985 23 C -0.210 4.210 24 C -0.088 4.088 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.114 0.886 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.976 -21.875 -2.205 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.068 4.068 11 C -0.105 4.105 12 C -0.170 4.170 13 C 0.052 3.948 14 O -0.220 6.220 15 C -0.008 4.008 16 C -0.071 4.071 17 N -0.254 5.254 18 C -0.109 4.109 19 C -0.014 4.014 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.113 4.113 23 C -0.229 4.229 24 C -0.106 4.106 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.132 0.868 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.622 -21.864 -1.713 24.820 hybrid contribution 0.963 1.106 -0.944 1.744 sum 12.585 -20.757 -2.657 24.419 Atomic orbital electron populations 1.69946 1.06022 1.26879 1.50559 1.25016 0.94876 0.99217 0.95253 0.86611 0.79544 0.82892 0.78714 1.20223 1.21246 1.20162 1.21062 0.93015 0.90003 1.50905 0.92572 1.18291 0.92485 0.89548 0.98231 1.20601 0.98039 0.96413 0.91790 1.20923 0.96233 0.94726 0.98608 1.20307 1.01604 0.99531 0.95539 1.18836 0.92409 0.89313 0.94266 1.86077 1.58765 1.47232 1.29916 1.22641 0.97536 0.95100 0.85484 1.22184 0.96168 0.90248 0.98479 1.62127 1.21596 1.09221 1.32466 1.22796 0.94490 0.94483 0.99122 1.22668 0.93195 0.94103 0.91422 1.87971 1.48756 1.35413 1.58511 1.22660 0.90841 0.90911 0.96923 1.22866 0.97550 0.96731 0.94167 1.21083 1.03900 1.01775 0.96094 1.20876 0.96308 0.94933 0.98489 0.92816 0.95501 0.95412 0.85803 0.86334 0.91935 0.92454 0.89539 0.92557 0.94133 0.89394 0.91972 0.88498 0.91908 0.88424 0.89439 0.94018 0.86845 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.42 9.09 -34.44 -0.31 -14.74 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.33 5.10 -29.03 -0.15 1.18 16 10 C -0.07 -1.50 5.07 -104.60 -0.53 -2.03 16 11 C -0.09 -1.73 9.69 -39.61 -0.38 -2.12 16 12 C -0.15 -2.71 9.99 -39.44 -0.39 -3.11 16 13 C 0.10 1.65 6.69 -39.22 -0.26 1.39 16 14 O -0.31 -4.64 10.08 -19.45 -0.20 -4.83 16 15 C 0.07 0.77 4.93 37.16 0.18 0.95 16 16 C 0.06 0.52 5.39 -3.82 -0.02 0.50 16 17 N -0.53 -5.20 4.60 -234.31 -1.08 -6.28 16 18 C 0.02 0.16 5.60 -3.71 -0.02 0.14 16 19 C 0.06 0.52 7.01 37.21 0.26 0.78 16 20 O -0.39 -3.93 10.83 -35.23 -0.38 -4.31 16 21 C 0.06 0.56 7.01 37.21 0.26 0.82 16 22 C 0.01 0.13 5.47 -3.71 -0.02 0.11 16 23 C -0.21 -3.59 9.04 -39.43 -0.36 -3.95 16 24 C -0.09 -1.74 9.69 -39.61 -0.38 -2.12 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 28 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 29 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 31 H 0.06 0.62 6.28 -51.93 -0.33 0.30 16 32 H 0.09 0.77 7.86 -51.93 -0.41 0.36 16 33 H 0.06 0.42 7.99 -51.93 -0.41 0.00 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.65 8.02 -51.93 -0.42 0.24 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.76 6.74 -51.93 -0.35 0.41 16 41 H 0.04 0.35 8.13 -51.93 -0.42 -0.08 16 42 H 0.11 1.61 6.30 -52.49 -0.33 1.28 16 43 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -31.61 350.96 -9.71 -41.32 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.83 Total: -1.35 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -2.23 Total: -20.64 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: -0.34 Total: -32.08 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.58 Total: -9.15 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.61 -9.71 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.390 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds