Wall clock time and date at job start Tue Mar 31 2020 07:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00141 * 2 1 4 4 H 1.48499 * 109.46937 * 240.00368 * 3 2 1 5 5 H 1.48503 * 109.46960 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47022 * 120.00365 * 3 2 1 7 7 C 1.37880 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46693 * 180.02562 * 9 7 2 11 11 C 1.38262 * 119.94473 * 90.00390 * 10 9 7 12 12 C 1.38137 * 120.05561 * 179.97438 * 11 10 9 13 13 C 1.38731 * 119.94460 * 359.97438 * 12 11 10 14 14 O 1.35907 * 120.05551 * 180.02562 * 13 12 11 15 15 C 1.42899 * 116.99792 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47129 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.46945 * 64.74328 * 16 15 14 18 18 C 1.47015 * 110.99966 * 199.38661 * 17 16 15 19 19 C 1.53093 * 109.25962 * 177.60564 * 18 17 16 20 20 O 1.43019 * 109.25922 * 56.84744 * 19 18 17 21 21 C 1.43016 * 113.73519 * 301.32913 * 20 19 18 22 22 C 1.47013 * 111.00233 * 75.74589 * 17 16 15 23 23 C 1.38735 * 119.89137 * 0.27972 * 13 12 11 24 24 C 1.38146 * 119.93420 * 359.42109 * 23 13 12 25 25 H 0.97001 * 119.99884 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46805 * 60.00155 * 9 7 2 27 27 H 1.08995 * 109.46915 * 300.00063 * 9 7 2 28 28 H 1.07999 * 119.97313 * 0.02562 * 11 10 9 29 29 H 1.08002 * 120.03129 * 179.97438 * 12 11 10 30 30 H 1.08996 * 109.47254 * 60.00281 * 15 14 13 31 31 H 1.08999 * 109.47337 * 300.00298 * 15 14 13 32 32 H 1.08997 * 109.46964 * 304.74137 * 16 15 14 33 33 H 1.08998 * 109.47435 * 184.73904 * 16 15 14 34 34 H 1.09006 * 109.50570 * 297.53988 * 18 17 16 35 35 H 1.08997 * 109.50913 * 57.66685 * 18 17 16 36 36 H 1.08998 * 109.50713 * 296.90971 * 19 18 17 37 37 H 1.08999 * 109.54479 * 176.80066 * 19 18 17 38 38 H 1.08997 * 109.50776 * 298.73365 * 21 20 19 39 39 H 1.09000 * 109.53924 * 178.63065 * 21 20 19 40 40 H 1.09001 * 109.50880 * 302.32491 * 22 17 16 41 41 H 1.08997 * 109.50366 * 62.41798 * 22 17 16 42 42 H 1.07988 * 120.03063 * 179.72229 * 23 13 12 43 43 H 1.08002 * 119.96659 * 180.27574 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6788 -4.1692 1.1975 12 6 3.5761 -5.2195 1.2002 13 6 4.0269 -5.7482 -0.0006 14 8 4.9093 -6.7819 -0.0006 15 6 5.3305 -7.2752 -1.2738 16 6 6.3149 -8.4293 -1.0734 17 7 5.6265 -9.5527 -0.4238 18 6 6.5904 -10.4742 0.1952 19 6 5.8304 -11.5947 0.9099 20 8 4.9739 -12.2552 -0.0259 21 6 4.0221 -11.3873 -0.6472 22 6 4.7637 -10.2647 -1.3777 23 6 3.5795 -5.2166 -1.2014 24 6 2.6774 -4.1704 -1.1986 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.3266 -3.7581 2.1320 29 1 3.9265 -5.6287 2.1363 30 1 5.8173 -6.4746 -1.8308 31 1 4.4635 -7.6302 -1.8309 32 1 7.1412 -8.0970 -0.4450 33 1 6.7005 -8.7501 -2.0411 34 1 7.2307 -10.9030 -0.5757 35 1 7.2014 -9.9314 0.9163 36 1 5.2310 -11.1713 1.7159 37 1 6.5404 -12.3115 1.3222 38 1 3.3702 -10.9579 0.1135 39 1 3.4243 -11.9535 -1.3614 40 1 4.0414 -9.5689 -1.8047 41 1 5.3748 -10.6894 -2.1741 42 1 3.9324 -5.6235 -2.1374 43 1 2.3254 -3.7591 -2.1331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250054401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:51 Heat of formation + Delta-G solvation = -78.538795 kcal Electronic energy + Delta-G solvation = -22536.459678 eV Core-core repulsion = 19159.898020 eV Total energy + Delta-G solvation = -3376.561658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05960 -40.40434 -38.63097 -36.77124 -35.22079 -32.68195 -32.16239 -31.86230 -31.12546 -28.41910 -27.31930 -25.04889 -24.99640 -24.11221 -22.58812 -21.75075 -21.26511 -19.07670 -18.48304 -17.80497 -17.22992 -16.83128 -16.73355 -16.46830 -16.04308 -15.91335 -15.83624 -15.60003 -15.09604 -14.77279 -14.43669 -14.33730 -14.23402 -13.72726 -13.42106 -13.18260 -13.09739 -12.98629 -12.79772 -12.52135 -12.42595 -12.35424 -12.10410 -11.80194 -11.61205 -11.45674 -11.42585 -11.27187 -10.67679 -10.59161 -9.82092 -9.36045 -8.84128 -8.16879 -6.32116 0.52269 0.67769 1.39982 1.42682 1.51001 2.34982 2.40428 2.70816 2.95271 3.00069 3.11525 3.81043 3.94013 3.94461 4.01952 4.04818 4.17620 4.19742 4.28751 4.33685 4.39390 4.40447 4.48150 4.61205 4.62753 4.65384 4.72430 4.79837 4.82343 4.88365 4.92585 5.01413 5.10342 5.34395 5.39602 5.45960 5.58155 5.76257 5.89245 5.95120 5.99837 6.10218 6.16486 6.21231 6.64397 6.80627 7.36328 8.90215 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037761 B = 0.002559 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.322089 B =10937.808342 C =11095.173852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.061 3.939 10 C -0.102 4.102 11 C -0.094 4.094 12 C -0.153 4.153 13 C 0.109 3.891 14 O -0.310 6.310 15 C 0.059 3.941 16 C 0.061 3.939 17 N -0.550 5.550 18 C 0.022 3.978 19 C 0.060 3.940 20 O -0.404 6.404 21 C 0.061 3.939 22 C 0.017 3.983 23 C -0.201 4.201 24 C -0.095 4.095 25 H 0.265 0.735 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.121 0.879 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.116 0.884 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.148 0.852 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.414 -22.852 -2.905 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.171 4.171 13 C 0.064 3.936 14 O -0.225 6.225 15 C -0.017 4.017 16 C -0.066 4.066 17 N -0.276 5.276 18 C -0.106 4.106 19 C -0.017 4.017 20 O -0.323 6.323 21 C -0.016 4.016 22 C -0.111 4.111 23 C -0.219 4.219 24 C -0.114 4.114 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.139 0.861 29 H 0.157 0.843 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.165 0.835 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.075 -22.862 -2.416 26.956 hybrid contribution 0.252 1.249 -0.736 1.472 sum 14.327 -21.613 -3.152 26.121 Atomic orbital electron populations 1.70074 1.07663 1.27982 1.51355 1.25936 0.95772 1.03098 0.94644 0.85509 0.78310 0.78142 0.79156 1.19242 1.20546 1.19317 1.21388 0.93062 0.91358 1.50870 0.92819 1.18030 0.92786 0.91089 0.95702 1.20309 0.99319 0.96799 0.93780 1.20906 0.96951 0.95567 0.97798 1.20466 1.00873 0.98758 0.97051 1.18916 0.91713 0.89123 0.93890 1.86099 1.57758 1.46089 1.32507 1.23006 0.98436 0.96217 0.84018 1.22184 0.95436 0.89277 0.99745 1.62115 1.22408 1.09944 1.33097 1.22799 0.94256 0.94221 0.99327 1.22800 0.93258 0.94703 0.90937 1.87949 1.49183 1.36294 1.58910 1.22742 0.90720 0.91176 0.96933 1.22848 0.97533 0.96567 0.94134 1.21304 1.02500 1.00413 0.97695 1.20918 0.97039 0.95835 0.97573 0.92579 0.97955 0.97991 0.86057 0.84287 0.90598 0.91787 0.89236 0.90285 0.93520 0.88678 0.92913 0.86588 0.93101 0.86877 0.89424 0.93304 0.83465 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.53 -30.63 9.09 25.60 0.23 -30.40 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.06 3.32 5.10 29.11 0.15 3.47 16 10 C -0.10 -4.61 5.07 -19.85 -0.10 -4.71 16 11 C -0.09 -3.80 9.69 22.25 0.22 -3.58 16 12 C -0.15 -5.29 9.99 22.36 0.22 -5.07 16 13 C 0.11 3.50 6.69 22.51 0.15 3.65 16 14 O -0.31 -8.50 10.08 -92.50 -0.93 -9.43 16 15 C 0.06 1.12 4.93 71.98 0.35 1.47 16 16 C 0.06 0.91 5.39 86.30 0.46 1.37 16 17 N -0.55 -9.42 4.60 -895.22 -4.12 -13.54 16 18 C 0.02 0.31 5.60 86.31 0.48 0.79 16 19 C 0.06 0.89 7.01 72.01 0.50 1.39 16 20 O -0.40 -7.60 10.83 -148.98 -1.61 -9.22 16 21 C 0.06 0.99 7.01 72.01 0.50 1.49 16 22 C 0.02 0.26 5.47 86.31 0.47 0.74 16 23 C -0.20 -6.44 9.04 22.37 0.20 -6.23 16 24 C -0.10 -3.76 9.69 22.25 0.22 -3.54 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 27 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 28 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 29 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.08 1.28 7.65 -2.39 -0.02 1.26 16 31 H 0.06 1.16 6.28 -2.39 -0.02 1.15 16 32 H 0.09 1.29 7.86 -2.39 -0.02 1.27 16 33 H 0.08 0.85 7.99 -2.39 -0.02 0.83 16 34 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.09 1.18 8.02 -2.39 -0.02 1.16 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.32 6.74 -2.39 -0.02 1.30 16 41 H 0.05 0.68 8.13 -2.39 -0.02 0.66 16 42 H 0.15 3.66 6.30 -2.92 -0.02 3.64 16 43 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -68.64 350.96 1.16 -67.48 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.98 Total: 12.92 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 4.53 Total: -38.49 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -3.84 Total: -69.88 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -2.55 Total: -18.65 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.64 1.16 -67.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.058 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds