Wall clock time and date at job start Tue Mar 31 2020 08:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00031 * 3 2 1 5 5 H 1.48500 * 109.46784 * 29.99625 * 3 2 1 6 6 H 1.48494 * 109.47628 * 149.99895 * 3 2 1 7 7 C 1.37882 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47232 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 13 13 C 1.38832 * 120.35190 * 90.00557 * 12 11 10 14 14 C 1.38382 * 118.48052 * 179.97438 * 13 12 11 15 15 C 1.38917 * 119.11391 * 359.97438 * 14 13 12 16 16 O 1.35678 * 119.68591 * 180.02562 * 15 14 13 17 17 C 1.42895 * 116.99936 * 180.02562 * 16 15 14 18 18 C 1.53180 * 109.54282 * 269.82259 * 17 16 15 19 19 C 1.53104 * 109.15957 * 183.24100 * 18 17 16 20 20 O 1.42911 * 109.48280 * 57.47607 * 19 18 17 21 21 C 1.42899 * 114.09633 * 298.88917 * 20 19 18 22 22 C 1.53086 * 109.41515 * 61.16023 * 21 20 19 23 23 N 1.32256 * 120.62999 * 0.02680 * 15 14 13 24 24 C 1.31963 * 121.64583 * 359.68610 * 23 15 14 25 25 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 27 27 H 1.09000 * 109.47247 * 299.99564 * 9 7 2 28 28 H 1.09004 * 109.46785 * 60.00162 * 10 9 7 29 29 H 1.09004 * 109.47694 * 300.00261 * 10 9 7 30 30 H 1.09000 * 109.46497 * 60.00561 * 11 10 9 31 31 H 1.09000 * 109.47312 * 300.00340 * 11 10 9 32 32 H 1.07997 * 120.75971 * 359.97438 * 13 12 11 33 33 H 1.07996 * 120.43978 * 179.97438 * 14 13 12 34 34 H 1.09002 * 109.54613 * 30.00111 * 17 16 15 35 35 H 1.08998 * 109.52596 * 303.06264 * 18 17 16 36 36 H 1.09006 * 109.51947 * 63.24902 * 18 17 16 37 37 H 1.09006 * 109.40692 * 297.49834 * 19 18 17 38 38 H 1.08994 * 109.48700 * 177.50649 * 19 18 17 39 39 H 1.08998 * 109.48328 * 301.17294 * 21 20 19 40 40 H 1.09003 * 109.48801 * 181.14773 * 21 20 19 41 41 H 1.09005 * 109.52069 * 182.48671 * 22 21 20 42 42 H 1.09000 * 109.57801 * 62.32811 * 22 21 20 43 43 H 1.07996 * 119.58160 * 180.30997 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4595 -6.1326 0.0018 13 6 2.9152 -6.6653 1.2001 14 6 3.8136 -7.7169 1.1555 15 6 4.2262 -8.2015 -0.0793 16 8 5.1062 -9.2325 -0.1365 17 6 5.4919 -9.6848 -1.4360 18 6 4.5349 -10.7873 -1.8998 19 6 5.0032 -11.3214 -3.2561 20 8 6.3448 -11.8005 -3.1422 21 6 7.2908 -10.8006 -2.7583 22 6 6.9157 -10.2472 -1.3812 23 7 3.7693 -7.6674 -1.1996 24 6 2.9079 -6.6677 -1.1891 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8906 29 1 2.8719 -3.6045 -0.8894 30 1 0.8533 -5.0451 -0.8887 31 1 0.8537 -5.0446 0.8914 32 1 2.5764 -6.2680 2.1455 33 1 4.1889 -8.1550 2.0685 34 1 5.4557 -8.8515 -2.1378 35 1 4.5329 -11.5981 -1.1714 36 1 3.5285 -10.3796 -1.9951 37 1 4.9649 -10.5198 -3.9938 38 1 4.3516 -12.1365 -3.5705 39 1 7.2824 -9.9923 -3.4896 40 1 8.2872 -11.2404 -2.7143 41 1 7.6104 -9.4535 -1.1060 42 1 6.9636 -11.0460 -0.6411 43 1 2.5527 -6.2601 -2.1240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:10 Heat of formation + Delta-G solvation = -76.537778 kcal Electronic energy + Delta-G solvation = -22326.248831 eV Core-core repulsion = 18949.773943 eV Total energy + Delta-G solvation = -3376.474888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82677 -39.59040 -37.87122 -34.91852 -33.15686 -32.79864 -31.90005 -31.50883 -30.03500 -26.80115 -25.29180 -24.07046 -23.75923 -23.30228 -21.58147 -20.63230 -20.09701 -18.60217 -17.24049 -16.45560 -16.33428 -16.21942 -15.66413 -15.13608 -15.04986 -14.67787 -14.45359 -14.15091 -13.97614 -13.69504 -13.57819 -13.05192 -12.88961 -12.60145 -12.43410 -12.00884 -11.72287 -11.65439 -11.49796 -11.30155 -10.87741 -10.82720 -10.74107 -10.55283 -10.52050 -10.10647 -9.82797 -9.74771 -9.53714 -9.30075 -9.10198 -8.36011 -8.20073 -6.01212 -4.03449 1.21090 1.34884 2.85060 3.30908 3.37236 3.40725 3.49541 3.81613 4.28435 4.37880 4.40879 4.45129 4.57153 4.77544 4.84485 4.90349 5.01225 5.06788 5.12063 5.15100 5.29123 5.31442 5.34623 5.41157 5.46047 5.59203 5.61901 5.72437 5.83501 5.89279 5.99040 6.05685 6.26271 6.35384 6.57023 6.75056 6.78623 6.84895 7.09515 7.23934 7.66269 7.80377 7.87965 7.98970 8.41860 9.03754 9.60711 11.10024 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.002424 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.863822 B =11550.157959 C =11808.771243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.104 4.104 11 C -0.076 4.076 12 C -0.149 4.149 13 C -0.042 4.042 14 C -0.188 4.188 15 C 0.303 3.697 16 O -0.303 6.303 17 C 0.091 3.909 18 C -0.171 4.171 19 C 0.065 3.935 20 O -0.383 6.383 21 C 0.066 3.934 22 C -0.155 4.155 23 N -0.539 5.539 24 C 0.136 3.864 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.191 -22.813 -2.999 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.141 4.141 11 C -0.114 4.114 12 C -0.152 4.152 13 C -0.067 4.067 14 C -0.208 4.208 15 C 0.124 3.876 16 O -0.211 6.211 17 C 0.034 3.966 18 C -0.209 4.209 19 C -0.011 4.011 20 O -0.302 6.302 21 C -0.011 4.011 22 C -0.192 4.192 23 N -0.262 5.262 24 C -0.019 4.019 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.524 -23.385 -3.620 25.899 hybrid contribution 0.006 1.697 0.755 1.857 sum 10.530 -21.689 -2.866 24.280 Atomic orbital electron populations 1.69962 1.06034 1.26584 1.50946 1.25026 0.94849 0.99242 0.95365 0.86610 0.79864 0.83523 0.78114 1.20663 1.21213 1.19907 1.21263 0.93024 0.91133 1.50458 0.92773 1.19119 0.93987 0.91294 0.97259 1.21648 0.99004 0.92978 1.00489 1.20676 0.95737 0.92166 1.02817 1.21053 1.01228 0.99383 0.93495 1.21389 0.93465 0.92944 0.98926 1.21017 1.02644 1.00604 0.96570 1.19730 0.89810 0.87913 0.90111 1.86266 1.57436 1.46028 1.31349 1.22263 0.93622 0.96648 0.84068 1.22641 1.00495 0.99117 0.98648 1.22558 0.83369 0.99773 0.95437 1.87936 1.17157 1.35897 1.89183 1.22559 0.93148 0.91731 0.93658 1.22341 0.95375 1.02059 0.99473 1.67205 1.15034 1.14101 1.29854 1.22329 0.91214 0.90155 0.98217 0.93011 0.96544 0.96562 0.93380 0.93332 0.91098 0.91185 0.84110 0.84542 0.89095 0.90494 0.90076 0.92646 0.88373 0.92697 0.88084 0.89984 0.90030 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.38 16 10 C -0.10 -2.05 5.13 -26.73 -0.14 -2.19 16 11 C -0.08 -1.20 5.37 -27.88 -0.15 -1.35 16 12 C -0.15 -2.13 5.15 -104.47 -0.54 -2.67 16 13 C -0.04 -0.54 9.85 -39.31 -0.39 -0.93 16 14 C -0.19 -2.38 10.04 -39.28 -0.39 -2.78 16 15 C 0.30 4.16 7.46 -17.12 -0.13 4.03 16 16 O -0.30 -3.86 9.77 -18.74 -0.18 -4.05 16 17 C 0.09 0.96 2.46 -26.55 -0.07 0.90 16 18 C -0.17 -1.63 5.77 -26.58 -0.15 -1.79 16 19 C 0.07 0.54 6.84 37.21 0.25 0.80 16 20 O -0.38 -3.64 10.77 -35.23 -0.38 -4.02 16 21 C 0.07 0.50 6.84 37.20 0.25 0.75 16 22 C -0.15 -1.32 5.79 -26.60 -0.15 -1.47 16 23 N -0.54 -7.59 8.65 -13.33 -0.12 -7.70 16 24 C 0.14 1.89 10.85 -17.57 -0.19 1.70 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 31 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 32 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.09 1.05 6.99 -51.93 -0.36 0.69 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -31.33 355.54 -9.03 -40.36 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.09 Total: -2.42 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.34 Total: -18.09 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.62 Total: -33.74 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.56 Total: -8.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.33 -9.03 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.181 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds