Wall clock time and date at job start Tue Mar 31 2020 08:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00031 * 3 2 1 5 5 H 1.48500 * 109.46784 * 29.99625 * 3 2 1 6 6 H 1.48494 * 109.47628 * 149.99895 * 3 2 1 7 7 C 1.37882 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47232 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 13 13 C 1.38832 * 120.35190 * 90.00557 * 12 11 10 14 14 C 1.38382 * 118.48052 * 179.97438 * 13 12 11 15 15 C 1.38917 * 119.11391 * 359.97438 * 14 13 12 16 16 O 1.35678 * 119.68591 * 180.02562 * 15 14 13 17 17 C 1.42895 * 116.99936 * 180.02562 * 16 15 14 18 18 C 1.53180 * 109.54282 * 269.82259 * 17 16 15 19 19 C 1.53104 * 109.15957 * 183.24100 * 18 17 16 20 20 O 1.42911 * 109.48280 * 57.47607 * 19 18 17 21 21 C 1.42899 * 114.09633 * 298.88917 * 20 19 18 22 22 C 1.53086 * 109.41515 * 61.16023 * 21 20 19 23 23 N 1.32256 * 120.62999 * 0.02680 * 15 14 13 24 24 C 1.31963 * 121.64583 * 359.68610 * 23 15 14 25 25 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 27 27 H 1.09000 * 109.47247 * 299.99564 * 9 7 2 28 28 H 1.09004 * 109.46785 * 60.00162 * 10 9 7 29 29 H 1.09004 * 109.47694 * 300.00261 * 10 9 7 30 30 H 1.09000 * 109.46497 * 60.00561 * 11 10 9 31 31 H 1.09000 * 109.47312 * 300.00340 * 11 10 9 32 32 H 1.07997 * 120.75971 * 359.97438 * 13 12 11 33 33 H 1.07996 * 120.43978 * 179.97438 * 14 13 12 34 34 H 1.09002 * 109.54613 * 30.00111 * 17 16 15 35 35 H 1.08998 * 109.52596 * 303.06264 * 18 17 16 36 36 H 1.09006 * 109.51947 * 63.24902 * 18 17 16 37 37 H 1.09006 * 109.40692 * 297.49834 * 19 18 17 38 38 H 1.08994 * 109.48700 * 177.50649 * 19 18 17 39 39 H 1.08998 * 109.48328 * 301.17294 * 21 20 19 40 40 H 1.09003 * 109.48801 * 181.14773 * 21 20 19 41 41 H 1.09005 * 109.52069 * 182.48671 * 22 21 20 42 42 H 1.09000 * 109.57801 * 62.32811 * 22 21 20 43 43 H 1.07996 * 119.58160 * 180.30997 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4595 -6.1326 0.0018 13 6 2.9152 -6.6653 1.2001 14 6 3.8136 -7.7169 1.1555 15 6 4.2262 -8.2015 -0.0793 16 8 5.1062 -9.2325 -0.1365 17 6 5.4919 -9.6848 -1.4360 18 6 4.5349 -10.7873 -1.8998 19 6 5.0032 -11.3214 -3.2561 20 8 6.3448 -11.8005 -3.1422 21 6 7.2908 -10.8006 -2.7583 22 6 6.9157 -10.2472 -1.3812 23 7 3.7693 -7.6674 -1.1996 24 6 2.9079 -6.6677 -1.1891 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8906 29 1 2.8719 -3.6045 -0.8894 30 1 0.8533 -5.0451 -0.8887 31 1 0.8537 -5.0446 0.8914 32 1 2.5764 -6.2680 2.1455 33 1 4.1889 -8.1550 2.0685 34 1 5.4557 -8.8515 -2.1378 35 1 4.5329 -11.5981 -1.1714 36 1 3.5285 -10.3796 -1.9951 37 1 4.9649 -10.5198 -3.9938 38 1 4.3516 -12.1365 -3.5705 39 1 7.2824 -9.9923 -3.4896 40 1 8.2872 -11.2404 -2.7143 41 1 7.6104 -9.4535 -1.1060 42 1 6.9636 -11.0460 -0.6411 43 1 2.5527 -6.2601 -2.1240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:05 Heat of formation + Delta-G solvation = -95.086453 kcal Electronic energy + Delta-G solvation = -22327.053161 eV Core-core repulsion = 18949.773943 eV Total energy + Delta-G solvation = -3377.279219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.79962 -40.40076 -38.78377 -36.50244 -34.68026 -33.87250 -33.13515 -32.17509 -31.50016 -28.40057 -26.21538 -25.43490 -24.64167 -24.29630 -22.95564 -21.71757 -21.38917 -19.55122 -18.47357 -18.15815 -17.18201 -17.01310 -16.60025 -16.53706 -16.08430 -15.83750 -15.67552 -15.40604 -14.96836 -14.69814 -14.55965 -14.35253 -14.09036 -13.94090 -13.45957 -13.22039 -13.18729 -12.96401 -12.60695 -12.49199 -12.37319 -12.33381 -12.25320 -11.56555 -11.48381 -11.38641 -11.32431 -11.18188 -10.81155 -10.75508 -10.53813 -10.47606 -9.30188 -8.19152 -6.29676 0.17369 0.29632 1.40080 1.40792 1.51937 1.94578 2.41248 2.76355 2.87598 3.13878 3.30375 3.65947 3.66149 3.86384 3.90582 3.97730 4.03292 4.07275 4.16280 4.20379 4.39756 4.48343 4.51658 4.58073 4.63161 4.70925 4.73765 4.75756 4.80148 4.96148 4.98841 5.00307 5.04651 5.12461 5.26362 5.27924 5.43852 5.51744 5.56352 5.80467 5.89122 6.15182 6.24802 6.28200 6.83521 6.87746 7.39340 8.92221 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.002424 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.863822 B =11550.157959 C =11808.771243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.089 4.089 11 C -0.063 4.063 12 C -0.161 4.161 13 C -0.040 4.040 14 C -0.189 4.189 15 C 0.294 3.706 16 O -0.309 6.309 17 C 0.084 3.916 18 C -0.165 4.165 19 C 0.067 3.933 20 O -0.397 6.397 21 C 0.064 3.936 22 C -0.149 4.149 23 N -0.548 5.548 24 C 0.130 3.870 25 H 0.263 0.737 26 H -0.005 1.005 27 H -0.005 1.005 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.652 -23.354 -2.932 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.127 4.127 11 C -0.101 4.101 12 C -0.163 4.163 13 C -0.066 4.066 14 C -0.209 4.209 15 C 0.116 3.884 16 O -0.217 6.217 17 C 0.028 3.972 18 C -0.203 4.203 19 C -0.010 4.010 20 O -0.316 6.316 21 C -0.012 4.012 22 C -0.187 4.187 23 N -0.271 5.271 24 C -0.025 4.025 25 H 0.072 0.928 26 H 0.013 0.987 27 H 0.013 0.987 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.998 -23.943 -3.556 27.017 hybrid contribution -0.437 1.811 0.732 2.002 sum 11.561 -22.132 -2.825 25.129 Atomic orbital electron populations 1.70085 1.07661 1.27703 1.51789 1.25946 0.95768 1.03209 0.94868 0.85506 0.78689 0.78742 0.78479 1.19821 1.20677 1.18938 1.21723 0.93427 0.92659 1.50330 0.92579 1.19039 0.94457 0.92831 0.95107 1.21413 0.97839 0.93126 1.00333 1.20446 0.95704 0.90662 1.03310 1.20885 1.01658 0.99460 0.94316 1.21626 0.92995 0.92701 0.99237 1.21270 1.02230 1.00311 0.97102 1.20028 0.89844 0.88082 0.90492 1.86265 1.57152 1.45712 1.32588 1.22463 0.95127 0.96571 0.83045 1.22578 0.99753 0.98579 0.99392 1.22618 0.83322 1.00431 0.94628 1.87921 1.17656 1.36833 1.89218 1.22716 0.93664 0.91812 0.93031 1.22340 0.94077 1.02091 1.00201 1.67236 1.15309 1.14305 1.30286 1.22535 0.91098 0.90124 0.98695 0.92786 0.98696 0.98652 0.93397 0.93498 0.90741 0.90713 0.82343 0.82428 0.90189 0.90791 0.91087 0.92240 0.86943 0.92079 0.86060 0.89359 0.90153 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.09 -3.53 5.13 30.59 0.16 -3.38 16 11 C -0.06 -1.96 5.37 29.85 0.16 -1.80 16 12 C -0.16 -4.41 5.15 -19.77 -0.10 -4.51 16 13 C -0.04 -0.98 9.85 22.45 0.22 -0.76 16 14 C -0.19 -4.47 10.04 22.47 0.23 -4.24 16 15 C 0.29 7.76 7.46 84.79 0.63 8.39 16 16 O -0.31 -7.58 9.77 -89.96 -0.88 -8.46 16 17 C 0.08 1.72 2.46 30.71 0.08 1.79 16 18 C -0.16 -3.04 5.77 30.69 0.18 -2.86 16 19 C 0.07 1.03 6.84 72.02 0.49 1.52 16 20 O -0.40 -6.93 10.77 -148.98 -1.60 -8.53 16 21 C 0.06 0.86 6.84 72.01 0.49 1.35 16 22 C -0.15 -2.34 5.79 30.68 0.18 -2.16 16 23 N -0.55 -15.02 8.65 -308.95 -2.67 -17.69 16 24 C 0.13 3.51 10.85 84.63 0.92 4.43 16 25 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 26 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 27 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 2.24 8.09 -2.39 -0.02 2.22 16 31 H 0.07 2.23 8.09 -2.39 -0.02 2.22 16 32 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 33 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 34 H 0.08 1.81 6.99 -2.39 -0.02 1.79 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -66.56 355.54 2.60 -63.96 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.97 Total: 11.67 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 4.47 Total: -31.07 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -2.39 Total: -73.80 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -2.48 Total: -16.99 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.56 2.60 -63.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.128 kcal (2) G-P(sol) polarization free energy of solvation -66.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds