Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.09007 * 109.47006 * 57.36897 * 3 2 1 5 5 C 1.50698 * 109.47178 * 177.36684 * 3 2 1 6 6 H 1.07998 * 119.99647 * 120.00151 * 5 3 2 7 7 C 1.37870 * 120.00038 * 300.27707 * 5 3 2 8 8 N 1.31517 * 120.00262 * 359.72505 * 7 5 3 9 9 Si 1.86803 * 120.00156 * 179.72214 * 7 5 3 10 10 H 1.48500 * 109.46933 * 59.99821 * 9 7 5 11 11 H 1.48495 * 109.47230 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47041 * 300.00065 * 9 7 5 13 13 N 1.46902 * 109.47296 * 297.36890 * 3 2 1 14 14 C 1.46466 * 110.99777 * 295.82753 * 13 3 2 15 15 C 1.53248 * 109.85878 * 162.23356 * 14 13 3 16 16 S 1.81903 * 108.50809 * 62.00209 * 15 14 13 17 17 C 1.81908 * 101.91251 * 308.69414 * 16 15 14 18 18 C 1.46464 * 111.00111 * 169.84389 * 13 3 2 19 19 H 1.09003 * 109.40823 * 77.64753 * 18 13 3 20 20 C 1.50704 * 109.40944 * 317.88561 * 18 13 3 21 21 C 1.38239 * 119.99876 * 319.72930 * 20 18 13 22 22 C 1.38229 * 120.00058 * 179.80865 * 21 20 18 23 23 C 1.38238 * 120.00127 * 0.41917 * 22 21 20 24 24 C 1.38238 * 119.99670 * 359.80981 * 23 22 21 25 25 C 1.38231 * 120.00096 * 0.02562 * 24 23 22 26 26 H 1.09007 * 109.46946 * 299.99881 * 1 2 3 27 27 H 1.08999 * 109.47327 * 59.99623 * 1 2 3 28 28 H 1.09000 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47099 * 240.00393 * 2 1 3 30 30 H 1.08999 * 109.47326 * 119.99819 * 2 1 3 31 31 H 0.96995 * 120.00309 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.40510 * 282.34656 * 14 13 3 33 33 H 1.08992 * 109.40848 * 42.11601 * 14 13 3 34 34 H 1.09004 * 109.63407 * 302.29662 * 15 14 13 35 35 H 1.08999 * 109.79716 * 181.79917 * 15 14 13 36 36 H 1.08999 * 109.62871 * 291.60162 * 17 16 15 37 37 H 1.08999 * 109.79388 * 171.10343 * 17 16 15 38 38 H 1.08002 * 119.99596 * 359.97438 * 21 20 18 39 39 H 1.07999 * 120.00183 * 180.20603 * 22 21 20 40 40 H 1.07999 * 120.00386 * 179.79393 * 23 22 21 41 41 H 1.08003 * 119.99815 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.00170 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6386 1.9698 0.8655 5 6 3.5455 1.4431 0.0653 6 1 4.1202 1.8985 -0.7277 7 6 4.1894 0.8572 1.1344 8 7 3.4896 0.3026 2.1000 9 14 6.0558 0.8510 1.2115 10 1 6.5557 2.2493 1.2140 11 1 6.4977 0.1645 2.4519 12 1 6.5977 0.1338 0.0295 13 7 1.6029 2.1165 -1.2300 14 6 2.2040 1.4938 -2.4116 15 6 1.4220 1.8960 -3.6666 16 16 1.5314 3.7013 -3.8614 17 6 1.0256 4.2878 -2.2154 18 6 1.8623 3.5563 -1.1602 19 1 2.9204 3.7430 -1.3436 20 6 1.4960 4.0653 0.2102 21 6 0.3580 3.5970 0.8401 22 6 0.0241 4.0609 2.0987 23 6 0.8235 4.9995 2.7239 24 6 1.9589 5.4713 2.0920 25 6 2.2946 5.0049 0.8348 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9426 -0.1099 2.8519 32 1 3.2384 1.8238 -2.5082 33 1 2.1796 0.4097 -2.3016 34 1 0.3780 1.6021 -3.5575 35 1 1.8506 1.4068 -4.5413 36 1 -0.0313 4.0723 -2.0587 37 1 1.1959 5.3616 -2.1378 38 1 -0.2687 2.8666 0.3499 39 1 -0.8631 3.6925 2.5922 40 1 0.5609 5.3645 3.7058 41 1 2.5832 6.2050 2.5803 42 1 3.1815 5.3738 0.3410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = 33.201179 kcal Electronic energy + Delta-G solvation = -22626.333602 eV Core-core repulsion = 19697.370224 eV Total energy + Delta-G solvation = -2928.963378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49084 -37.26171 -33.77534 -32.26048 -31.42862 -30.33405 -29.04227 -28.83346 -25.92064 -23.46954 -23.02719 -22.31956 -21.45011 -20.01534 -18.93537 -16.98182 -15.94756 -15.87926 -15.37913 -14.92407 -14.59309 -14.15540 -13.90666 -13.65578 -13.44103 -13.11109 -12.79266 -12.71675 -12.50630 -12.20721 -11.95188 -11.85639 -11.24098 -11.12097 -11.11512 -11.04678 -10.90657 -10.64305 -10.49708 -10.27299 -10.07122 -9.73259 -9.60529 -9.20304 -9.16059 -8.47771 -8.27823 -7.91887 -7.42324 -7.22938 -6.01154 -4.12459 1.89441 1.99212 2.19176 2.88307 3.26041 3.31451 3.34371 4.33021 4.38074 4.67574 5.23988 5.30924 5.39562 5.42114 5.47414 5.50407 5.59227 5.65853 5.75643 5.83663 5.90410 6.08092 6.13470 6.22581 6.34937 6.37949 6.44842 6.51906 6.59301 6.62590 6.65840 6.96275 7.02880 7.03916 7.14601 7.16565 7.30393 7.55612 7.57749 7.71189 7.87481 8.09618 8.23609 8.39736 8.94361 9.54363 10.98989 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010992 B = 0.008748 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.738858 B = 3199.813735 C = 4168.180894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.207 3.793 4 H 0.064 0.936 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.073 3.927 8 N -0.882 5.882 9 Si 0.882 3.118 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.539 5.539 14 C 0.064 3.936 15 C -0.069 4.069 16 S -0.298 6.298 17 C -0.058 4.058 18 C 0.134 3.866 19 H 0.059 0.941 20 C -0.050 4.050 21 C -0.084 4.084 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.106 4.106 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.025 0.975 29 H 0.032 0.968 30 H 0.093 0.907 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 5.955 -3.965 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.102 3.898 4 H 0.082 0.918 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.130 4.130 8 N -0.521 5.521 9 Si 0.710 3.290 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.263 5.263 14 C -0.066 4.066 15 C -0.218 4.218 16 S -0.071 6.071 17 C -0.207 4.207 18 C 0.024 3.976 19 H 0.077 0.923 20 C -0.052 4.052 21 C -0.103 4.103 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.125 4.125 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.271 6.383 -4.780 10.145 hybrid contribution 1.775 -0.753 1.288 2.319 sum -4.496 5.630 -3.492 8.007 Atomic orbital electron populations 1.21732 0.98961 0.98513 1.00430 1.21666 0.92106 0.99373 1.01983 1.19593 0.92951 0.90794 0.86464 0.91809 1.21626 0.92523 1.37396 1.06446 0.92970 1.24830 0.97605 0.95041 0.95514 1.69844 1.34932 1.37421 1.09861 0.86813 0.86615 0.78209 0.77323 1.20389 1.21302 1.20402 1.61709 1.59315 1.00475 1.04845 1.22037 0.95752 1.00667 0.88148 1.23606 1.04397 0.91991 1.01774 1.86554 1.90842 1.08763 1.20927 1.23566 1.02963 1.01906 0.92253 1.20442 0.97324 0.89774 0.90057 0.92285 1.19550 0.94622 0.95579 0.95448 1.21003 0.96518 0.97966 0.94784 1.21022 0.99989 0.98003 0.95693 1.20969 0.95761 0.98360 0.99344 1.20930 0.97312 1.00850 0.95388 1.20898 0.98786 0.97516 0.95318 0.94218 0.93455 0.95571 0.94970 0.88864 0.92907 0.93537 0.89372 0.89749 0.88633 0.89551 0.88521 0.85553 0.86846 0.87072 0.86946 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.78 37.16 0.36 -2.26 16 2 C -0.11 -2.50 5.10 -26.73 -0.14 -2.64 16 3 C 0.21 4.65 1.03 -68.86 -0.07 4.58 16 4 H 0.06 1.58 4.64 -51.93 -0.24 1.33 16 5 C -0.54 -13.72 7.43 -34.44 -0.26 -13.98 16 6 H 0.05 1.36 6.21 -52.49 -0.33 1.03 16 7 C 0.07 1.92 5.30 -17.82 -0.09 1.83 16 8 N -0.88 -24.06 11.29 55.43 0.63 -23.44 16 9 Si 0.88 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.54 -10.25 3.11 -221.87 -0.69 -10.94 16 14 C 0.06 1.16 4.52 -3.93 -0.02 1.14 16 15 C -0.07 -1.05 6.69 37.29 0.25 -0.80 16 16 S -0.30 -4.70 22.40 -107.50 -2.41 -7.11 16 17 C -0.06 -0.90 5.95 37.29 0.22 -0.68 16 18 C 0.13 2.43 1.65 -68.97 -0.11 2.32 16 19 H 0.06 1.20 7.32 -51.93 -0.38 0.82 16 20 C -0.05 -0.91 3.67 -104.62 -0.38 -1.29 16 21 C -0.08 -1.50 7.11 -39.58 -0.28 -1.78 16 22 C -0.13 -2.12 10.05 -39.58 -0.40 -2.51 16 23 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 24 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 25 C -0.11 -1.87 9.67 -39.59 -0.38 -2.26 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.85 7.68 -51.93 -0.40 0.45 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.70 6.09 -51.93 -0.32 0.39 16 30 H 0.09 2.37 5.99 -51.93 -0.31 2.06 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.05 0.93 6.74 -51.93 -0.35 0.58 16 33 H 0.09 1.66 5.74 -51.93 -0.30 1.36 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.13 2.25 7.60 -52.49 -0.40 1.85 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 42 H 0.11 1.88 8.04 -52.48 -0.42 1.46 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -26.44 333.06 -10.95 -37.39 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.38 Total: 6.37 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -2.10 Total: -23.17 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.06 Total: -34.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -2.41 Total: -7.11 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.44 -10.95 -37.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.592 kcal (2) G-P(sol) polarization free energy of solvation -26.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds