Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.09007 * 109.47006 * 57.36897 * 3 2 1 5 5 C 1.50698 * 109.47178 * 177.36684 * 3 2 1 6 6 H 1.07998 * 119.99647 * 120.00151 * 5 3 2 7 7 C 1.37870 * 120.00038 * 300.27707 * 5 3 2 8 8 N 1.31517 * 120.00262 * 359.72505 * 7 5 3 9 9 Si 1.86803 * 120.00156 * 179.72214 * 7 5 3 10 10 H 1.48500 * 109.46933 * 59.99821 * 9 7 5 11 11 H 1.48495 * 109.47230 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47041 * 300.00065 * 9 7 5 13 13 N 1.46902 * 109.47296 * 297.36890 * 3 2 1 14 14 C 1.46466 * 110.99777 * 295.82753 * 13 3 2 15 15 C 1.53248 * 109.85878 * 162.23356 * 14 13 3 16 16 S 1.81903 * 108.50809 * 62.00209 * 15 14 13 17 17 C 1.81908 * 101.91251 * 308.69414 * 16 15 14 18 18 C 1.46464 * 111.00111 * 169.84389 * 13 3 2 19 19 H 1.09003 * 109.40823 * 77.64753 * 18 13 3 20 20 C 1.50704 * 109.40944 * 317.88561 * 18 13 3 21 21 C 1.38239 * 119.99876 * 319.72930 * 20 18 13 22 22 C 1.38229 * 120.00058 * 179.80865 * 21 20 18 23 23 C 1.38238 * 120.00127 * 0.41917 * 22 21 20 24 24 C 1.38238 * 119.99670 * 359.80981 * 23 22 21 25 25 C 1.38231 * 120.00096 * 0.02562 * 24 23 22 26 26 H 1.09007 * 109.46946 * 299.99881 * 1 2 3 27 27 H 1.08999 * 109.47327 * 59.99623 * 1 2 3 28 28 H 1.09000 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47099 * 240.00393 * 2 1 3 30 30 H 1.08999 * 109.47326 * 119.99819 * 2 1 3 31 31 H 0.96995 * 120.00309 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.40510 * 282.34656 * 14 13 3 33 33 H 1.08992 * 109.40848 * 42.11601 * 14 13 3 34 34 H 1.09004 * 109.63407 * 302.29662 * 15 14 13 35 35 H 1.08999 * 109.79716 * 181.79917 * 15 14 13 36 36 H 1.08999 * 109.62871 * 291.60162 * 17 16 15 37 37 H 1.08999 * 109.79388 * 171.10343 * 17 16 15 38 38 H 1.08002 * 119.99596 * 359.97438 * 21 20 18 39 39 H 1.07999 * 120.00183 * 180.20603 * 22 21 20 40 40 H 1.07999 * 120.00386 * 179.79393 * 23 22 21 41 41 H 1.08003 * 119.99815 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.00170 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6386 1.9698 0.8655 5 6 3.5455 1.4431 0.0653 6 1 4.1202 1.8985 -0.7277 7 6 4.1894 0.8572 1.1344 8 7 3.4896 0.3026 2.1000 9 14 6.0558 0.8510 1.2115 10 1 6.5557 2.2493 1.2140 11 1 6.4977 0.1645 2.4519 12 1 6.5977 0.1338 0.0295 13 7 1.6029 2.1165 -1.2300 14 6 2.2040 1.4938 -2.4116 15 6 1.4220 1.8960 -3.6666 16 16 1.5314 3.7013 -3.8614 17 6 1.0256 4.2878 -2.2154 18 6 1.8623 3.5563 -1.1602 19 1 2.9204 3.7430 -1.3436 20 6 1.4960 4.0653 0.2102 21 6 0.3580 3.5970 0.8401 22 6 0.0241 4.0609 2.0987 23 6 0.8235 4.9995 2.7239 24 6 1.9589 5.4713 2.0920 25 6 2.2946 5.0049 0.8348 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9426 -0.1099 2.8519 32 1 3.2384 1.8238 -2.5082 33 1 2.1796 0.4097 -2.3016 34 1 0.3780 1.6021 -3.5575 35 1 1.8506 1.4068 -4.5413 36 1 -0.0313 4.0723 -2.0587 37 1 1.1959 5.3616 -2.1378 38 1 -0.2687 2.8666 0.3499 39 1 -0.8631 3.6925 2.5922 40 1 0.5609 5.3645 3.7058 41 1 2.5832 6.2050 2.5803 42 1 3.1815 5.3738 0.3410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = 21.831826 kcal Electronic energy + Delta-G solvation = -22626.826615 eV Core-core repulsion = 19697.370224 eV Total energy + Delta-G solvation = -2929.456391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.91912 -38.71780 -35.49819 -33.80336 -33.12357 -31.64315 -30.55481 -30.15594 -27.73983 -24.93807 -24.63318 -23.73142 -22.82281 -21.51928 -20.59842 -18.58260 -17.64467 -17.17364 -16.97551 -16.51153 -16.04549 -15.69820 -15.34038 -15.02501 -14.89207 -14.74988 -14.14442 -14.09461 -14.01418 -13.61735 -13.46862 -13.28607 -13.06522 -12.84923 -12.74105 -12.51378 -12.36986 -12.34366 -11.94208 -11.82116 -11.71479 -11.51122 -11.20217 -10.93118 -10.61033 -10.37878 -9.61424 -9.31981 -9.01998 -8.59997 -8.00251 -6.17949 0.58724 0.67747 0.92565 1.34284 1.36984 1.41955 1.60979 2.40593 3.00271 3.16945 3.23851 3.94870 4.04745 4.08260 4.17856 4.28679 4.32419 4.38301 4.44171 4.44689 4.57636 4.66653 4.78572 4.79954 4.85022 4.91303 4.96964 5.01756 5.15246 5.22658 5.31918 5.34850 5.47756 5.53120 5.64515 5.70078 5.75476 5.83452 5.90749 6.09119 6.23894 6.28581 6.39742 6.67094 7.00262 7.50779 8.94978 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010992 B = 0.008748 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.738858 B = 3199.813735 C = 4168.180894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.217 3.783 4 H 0.047 0.953 5 C -0.542 4.542 6 H 0.039 0.961 7 C 0.031 3.969 8 N -0.904 5.904 9 Si 0.928 3.072 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.528 5.528 14 C 0.066 3.934 15 C -0.059 4.059 16 S -0.301 6.301 17 C -0.049 4.049 18 C 0.139 3.861 19 H 0.030 0.970 20 C -0.067 4.067 21 C -0.097 4.097 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.127 4.127 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.258 0.742 32 H 0.022 0.978 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 6.591 -4.263 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 C 0.111 3.889 4 H 0.064 0.936 5 C -0.581 4.581 6 H 0.057 0.943 7 C -0.169 4.169 8 N -0.543 5.543 9 Si 0.756 3.244 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.252 5.252 14 C -0.064 4.064 15 C -0.207 4.207 16 S -0.073 6.073 17 C -0.197 4.197 18 C 0.029 3.971 19 H 0.048 0.952 20 C -0.069 4.069 21 C -0.115 4.115 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.146 4.146 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.261 7.028 -5.096 11.318 hybrid contribution 2.103 -0.912 1.384 2.678 sum -5.158 6.116 -3.712 8.820 Atomic orbital electron populations 1.21577 0.96214 0.99683 1.00790 1.21515 0.94503 0.98605 1.00167 1.19325 0.91037 0.91116 0.87452 0.93558 1.21876 0.94323 1.36281 1.05628 0.94317 1.25375 1.00540 0.95327 0.95644 1.69957 1.35803 1.38353 1.10219 0.86080 0.83247 0.77890 0.77197 1.20553 1.21120 1.20259 1.61693 1.58667 1.00973 1.03872 1.22015 0.95043 1.00114 0.89222 1.23548 1.04627 0.91769 1.00779 1.86596 1.90973 1.09080 1.20684 1.23484 1.02691 1.02310 0.91241 1.20392 0.96171 0.89210 0.91358 0.95162 1.19633 0.95288 0.96307 0.95643 1.21040 0.96561 0.98323 0.95610 1.21358 1.00832 0.97884 0.95256 1.21356 0.95165 0.97705 1.00439 1.21274 0.97793 1.01012 0.94849 1.21097 0.99076 0.98113 0.96334 0.94587 0.92240 0.93990 0.95270 0.92135 0.93230 0.95957 0.90142 0.88572 0.86488 0.88800 0.87248 0.85971 0.84718 0.84129 0.84592 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.78 71.98 0.70 -3.88 16 2 C -0.11 -4.87 5.10 30.59 0.16 -4.71 16 3 C 0.22 9.85 1.03 44.17 0.05 9.90 16 4 H 0.05 2.32 4.64 -2.38 -0.01 2.31 16 5 C -0.54 -28.04 7.43 25.60 0.19 -27.85 16 6 H 0.04 2.07 6.21 -2.91 -0.02 2.05 16 7 C 0.03 1.67 5.30 84.65 0.45 2.12 16 8 N -0.90 -50.08 11.29 21.45 0.24 -49.84 16 9 Si 0.93 43.37 29.54 68.60 2.03 45.39 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 N -0.53 -20.01 3.11 -855.86 -2.66 -22.67 16 14 C 0.07 2.37 4.52 86.47 0.39 2.76 16 15 C -0.06 -1.68 6.69 72.07 0.48 -1.20 16 16 S -0.30 -9.01 22.40 -56.49 -1.27 -10.28 16 17 C -0.05 -1.46 5.95 72.07 0.43 -1.03 16 18 C 0.14 5.04 1.65 44.34 0.07 5.11 16 19 H 0.03 1.27 7.32 -2.39 -0.02 1.25 16 20 C -0.07 -2.43 3.67 -19.86 -0.07 -2.50 16 21 C -0.10 -3.38 7.11 22.27 0.16 -3.23 16 22 C -0.14 -4.24 10.05 22.27 0.22 -4.01 16 23 C -0.13 -3.78 10.05 22.27 0.22 -3.56 16 24 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 25 C -0.13 -4.47 9.67 22.27 0.22 -4.25 16 26 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.06 2.01 7.68 -2.39 -0.02 2.00 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 1.28 6.09 -2.39 -0.01 1.26 16 30 H 0.06 3.12 5.99 -2.39 -0.01 3.11 16 31 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.02 0.91 6.74 -2.38 -0.02 0.89 16 33 H 0.08 3.02 5.74 -2.39 -0.01 3.00 16 34 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.12 4.28 7.60 -2.91 -0.02 4.25 16 39 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.11 3.84 8.04 -2.91 -0.02 3.82 16 Total: -1.00 -56.66 333.06 3.23 -53.44 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.99 Total: 24.13 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 3.89 Total: -40.18 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -2.42 Total: -72.51 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.27 Total: -10.28 kcal Total: -56.66 3.23 -53.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.269 kcal (2) G-P(sol) polarization free energy of solvation -56.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds