Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 H 1.09003 * 109.46918 * 57.15381 * 3 2 1 5 5 C 1.50698 * 109.47070 * 177.15240 * 3 2 1 6 6 H 1.07996 * 120.00258 * 114.34743 * 5 3 2 7 7 C 1.37886 * 119.99852 * 294.35084 * 5 3 2 8 8 N 1.31511 * 119.99609 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 119.99957 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47129 * 90.00169 * 9 7 5 11 11 H 1.48501 * 109.47150 * 210.00287 * 9 7 5 12 12 H 1.48495 * 109.47505 * 330.00530 * 9 7 5 13 13 N 1.46896 * 109.47090 * 297.15266 * 3 2 1 14 14 C 1.46462 * 111.00467 * 316.97800 * 13 3 2 15 15 C 1.53247 * 109.86531 * 197.76617 * 14 13 3 16 16 S 1.81900 * 108.50641 * 297.99725 * 15 14 13 17 17 C 1.81899 * 101.91131 * 51.30467 * 16 15 14 18 18 C 1.46471 * 111.00065 * 82.96111 * 13 3 2 19 19 H 1.08994 * 109.40782 * 282.34942 * 18 13 3 20 20 C 1.50703 * 109.40670 * 42.19532 * 18 13 3 21 21 C 1.38237 * 120.00002 * 47.66838 * 20 18 13 22 22 C 1.38236 * 119.99650 * 179.76920 * 21 20 18 23 23 C 1.38236 * 120.00037 * 0.48586 * 22 21 20 24 24 C 1.38237 * 120.00004 * 359.79309 * 23 22 21 25 25 C 1.38230 * 119.99780 * 227.94946 * 20 18 13 26 26 H 1.08998 * 109.47396 * 315.97327 * 1 2 3 27 27 H 1.08998 * 109.47342 * 75.97836 * 1 2 3 28 28 H 1.09001 * 109.47176 * 195.97338 * 1 2 3 29 29 H 1.08997 * 109.47078 * 240.00236 * 2 1 3 30 30 H 1.08996 * 109.47096 * 120.00020 * 2 1 3 31 31 H 0.97005 * 119.99532 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.40490 * 317.88968 * 14 13 3 33 33 H 1.09003 * 109.40730 * 77.64377 * 14 13 3 34 34 H 1.09008 * 109.62692 * 57.70473 * 15 14 13 35 35 H 1.09004 * 109.63248 * 178.28936 * 15 14 13 36 36 H 1.08998 * 109.62970 * 188.99024 * 17 16 15 37 37 H 1.08997 * 109.63454 * 68.39998 * 17 16 15 38 38 H 1.07995 * 119.99971 * 0.02562 * 21 20 18 39 39 H 1.07995 * 119.99958 * 180.25493 * 22 21 20 40 40 H 1.07996 * 119.99857 * 179.77079 * 23 22 21 41 41 H 1.07996 * 119.99891 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00178 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6355 1.9708 0.8634 5 6 3.5453 1.4432 0.0706 6 1 4.1248 1.8148 -0.7615 7 6 4.1828 0.9692 1.1976 8 7 5.4965 0.9702 1.2593 9 14 3.1805 0.3269 2.6371 10 1 2.9410 -1.1283 2.4634 11 1 3.9248 0.5587 3.9011 12 1 1.8790 1.0397 2.6913 13 7 1.6072 2.1148 -1.2323 14 6 1.7777 1.2405 -2.3949 15 6 1.7510 2.0733 -3.6811 16 16 0.1257 2.8793 -3.8133 17 6 -0.0352 3.6697 -2.1830 18 6 0.2374 2.6171 -1.1030 19 1 -0.4637 1.7905 -1.2178 20 6 0.0588 3.2400 0.2575 21 6 0.9989 4.1325 0.7379 22 6 0.8325 4.7075 1.9839 23 6 -0.2687 4.3825 2.7537 24 6 -1.2057 3.4856 2.2757 25 6 -1.0421 2.9145 1.0275 26 1 -0.3634 0.7389 0.7142 27 1 -0.3634 0.2490 -0.9970 28 1 -0.3633 -0.9880 0.2828 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.9450 0.6364 2.0521 32 1 2.7327 0.7205 -2.3200 33 1 0.9696 0.5095 -2.4200 34 1 2.5336 2.8311 -3.6430 35 1 1.9085 1.4232 -4.5417 36 1 -1.0449 4.0627 -2.0646 37 1 0.6887 4.4799 -2.0957 38 1 1.8610 4.3836 0.1380 39 1 1.5648 5.4079 2.3575 40 1 -0.3967 4.8289 3.7287 41 1 -2.0658 3.2313 2.8774 42 1 -1.7743 2.2141 0.6540 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = 46.472652 kcal Electronic energy + Delta-G solvation = -22804.436455 eV Core-core repulsion = 19876.048571 eV Total energy + Delta-G solvation = -2928.387884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.99697 -37.65889 -33.69371 -32.40309 -31.87851 -30.65700 -29.17093 -29.04969 -26.83541 -23.71286 -22.86932 -22.25211 -21.80066 -20.43046 -19.10329 -16.94468 -16.68805 -16.04329 -15.68860 -15.18976 -14.78290 -14.29790 -14.01020 -13.75804 -13.53533 -13.48649 -13.16413 -12.84866 -12.63698 -12.39894 -12.25864 -12.05614 -11.80088 -11.42351 -11.34539 -11.22314 -11.01104 -10.77878 -10.61724 -10.47096 -10.24713 -9.83691 -9.59989 -9.47091 -9.11882 -8.62946 -8.54320 -8.21044 -7.55517 -7.32759 -6.09588 -4.06672 1.63214 1.76031 2.08886 2.78067 3.23101 3.34921 3.37251 4.09132 4.37661 4.43606 5.05380 5.14251 5.20883 5.23408 5.29901 5.32161 5.44642 5.50310 5.51959 5.66325 5.71902 5.77843 5.83464 5.85623 5.95289 5.96984 6.12981 6.26488 6.29998 6.34234 6.41305 6.50719 6.53790 6.72912 6.75200 6.79519 6.87143 6.97584 7.13379 7.33619 7.64457 7.82886 7.97879 8.61181 8.99178 9.53410 11.03310 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.009121 C = 0.006528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.098398 B = 3069.182582 C = 4287.974832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.161 4.161 3 C 0.183 3.817 4 H 0.058 0.942 5 C -0.496 4.496 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.899 5.899 9 Si 0.869 3.131 10 H -0.280 1.280 11 H -0.294 1.294 12 H -0.262 1.262 13 N -0.522 5.522 14 C 0.061 3.939 15 C -0.068 4.068 16 S -0.297 6.297 17 C -0.059 4.059 18 C 0.111 3.889 19 H 0.068 0.932 20 C -0.066 4.066 21 C -0.077 4.077 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.120 4.120 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.263 0.737 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.429 4.048 -2.691 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.200 4.200 3 C 0.076 3.924 4 H 0.076 0.924 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.537 5.537 9 Si 0.699 3.301 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.187 1.187 13 N -0.246 5.246 14 C -0.068 4.068 15 C -0.217 4.217 16 S -0.070 6.070 17 C -0.208 4.208 18 C 0.001 3.999 19 H 0.085 0.915 20 C -0.068 4.068 21 C -0.095 4.095 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.138 4.138 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.681 4.419 -3.575 13.897 hybrid contribution -0.021 -1.264 2.077 2.431 sum -12.702 3.155 -1.498 13.173 Atomic orbital electron populations 1.22355 0.98371 1.00790 1.01116 1.22633 0.93315 1.02371 1.01681 1.20047 0.96693 0.87788 0.87860 0.92402 1.20902 0.88383 1.41004 1.03178 0.90182 1.24844 0.94587 0.95510 0.97831 1.69875 1.07486 1.47186 1.29164 0.87075 0.80991 0.79422 0.82611 1.20672 1.22162 1.18663 1.61399 1.18263 1.40193 1.04708 1.22169 1.02818 0.93475 0.88359 1.23599 0.94960 1.01854 1.01276 1.86579 1.28473 1.68338 1.23595 1.23542 1.04871 1.00174 0.92165 1.21028 0.92749 0.95701 0.90408 0.91465 1.19643 0.94719 0.97143 0.95336 1.21151 0.98001 0.94683 0.95701 1.21171 0.97604 1.00507 0.94950 1.21074 0.95119 0.98685 0.99495 1.20972 0.99479 0.98172 0.96073 1.20959 0.97913 1.00141 0.94828 0.92306 0.92762 0.94159 0.92007 0.92904 0.92709 0.88298 0.94186 0.89046 0.88315 0.88409 0.89128 0.84789 0.86243 0.86700 0.86661 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 8.23 37.16 0.31 -2.61 16 2 C -0.16 -3.32 4.49 -26.73 -0.12 -3.44 16 3 C 0.18 3.97 0.93 -68.87 -0.06 3.91 16 4 H 0.06 1.34 3.52 -51.93 -0.18 1.15 16 5 C -0.50 -13.06 8.55 -34.44 -0.29 -13.35 16 6 H 0.08 2.32 8.02 -52.49 -0.42 1.90 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 9 Si 0.87 21.46 24.69 -169.99 -4.20 17.26 16 10 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.30 6.38 56.52 0.36 -5.94 16 13 N -0.52 -9.69 3.82 -221.88 -0.85 -10.54 16 14 C 0.06 1.05 3.84 -3.94 -0.02 1.04 16 15 C -0.07 -1.02 6.69 37.29 0.25 -0.77 16 16 S -0.30 -4.40 22.40 -107.50 -2.41 -6.81 16 17 C -0.06 -0.86 5.86 37.29 0.22 -0.64 16 18 C 0.11 1.79 1.30 -68.97 -0.09 1.70 16 19 H 0.07 1.09 4.50 -51.93 -0.23 0.86 16 20 C -0.07 -1.09 2.75 -104.62 -0.29 -1.38 16 21 C -0.08 -1.32 7.70 -39.58 -0.30 -1.62 16 22 C -0.12 -1.95 10.05 -39.58 -0.40 -2.34 16 23 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 24 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 25 C -0.12 -1.79 7.80 -39.59 -0.31 -2.10 16 26 H 0.06 1.01 4.65 -51.93 -0.24 0.77 16 27 H 0.05 0.87 4.58 -51.93 -0.24 0.63 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.25 6.26 -51.93 -0.33 0.92 16 30 H 0.05 1.19 4.02 -51.93 -0.21 0.98 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.10 1.88 6.89 -51.93 -0.36 1.52 16 33 H 0.04 0.67 5.85 -51.93 -0.30 0.37 16 34 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.36 8.10 -51.93 -0.42 0.94 16 38 H 0.13 2.44 7.95 -52.49 -0.42 2.03 16 39 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.55 7.50 -52.49 -0.39 1.16 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -28.52 315.84 -9.81 -38.33 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.89 Total: 6.98 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -2.00 Total: -24.06 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.07 Total: -36.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.20 Total: 17.26 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -2.41 Total: -6.81 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.52 -9.81 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.807 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds