Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 H 1.09003 * 109.46918 * 57.15381 * 3 2 1 5 5 C 1.50698 * 109.47070 * 177.15240 * 3 2 1 6 6 H 1.07996 * 120.00258 * 114.34743 * 5 3 2 7 7 C 1.37886 * 119.99852 * 294.35084 * 5 3 2 8 8 N 1.31511 * 119.99609 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 119.99957 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47129 * 90.00169 * 9 7 5 11 11 H 1.48501 * 109.47150 * 210.00287 * 9 7 5 12 12 H 1.48495 * 109.47505 * 330.00530 * 9 7 5 13 13 N 1.46896 * 109.47090 * 297.15266 * 3 2 1 14 14 C 1.46462 * 111.00467 * 316.97800 * 13 3 2 15 15 C 1.53247 * 109.86531 * 197.76617 * 14 13 3 16 16 S 1.81900 * 108.50641 * 297.99725 * 15 14 13 17 17 C 1.81899 * 101.91131 * 51.30467 * 16 15 14 18 18 C 1.46471 * 111.00065 * 82.96111 * 13 3 2 19 19 H 1.08994 * 109.40782 * 282.34942 * 18 13 3 20 20 C 1.50703 * 109.40670 * 42.19532 * 18 13 3 21 21 C 1.38237 * 120.00002 * 47.66838 * 20 18 13 22 22 C 1.38236 * 119.99650 * 179.76920 * 21 20 18 23 23 C 1.38236 * 120.00037 * 0.48586 * 22 21 20 24 24 C 1.38237 * 120.00004 * 359.79309 * 23 22 21 25 25 C 1.38230 * 119.99780 * 227.94946 * 20 18 13 26 26 H 1.08998 * 109.47396 * 315.97327 * 1 2 3 27 27 H 1.08998 * 109.47342 * 75.97836 * 1 2 3 28 28 H 1.09001 * 109.47176 * 195.97338 * 1 2 3 29 29 H 1.08997 * 109.47078 * 240.00236 * 2 1 3 30 30 H 1.08996 * 109.47096 * 120.00020 * 2 1 3 31 31 H 0.97005 * 119.99532 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.40490 * 317.88968 * 14 13 3 33 33 H 1.09003 * 109.40730 * 77.64377 * 14 13 3 34 34 H 1.09008 * 109.62692 * 57.70473 * 15 14 13 35 35 H 1.09004 * 109.63248 * 178.28936 * 15 14 13 36 36 H 1.08998 * 109.62970 * 188.99024 * 17 16 15 37 37 H 1.08997 * 109.63454 * 68.39998 * 17 16 15 38 38 H 1.07995 * 119.99971 * 0.02562 * 21 20 18 39 39 H 1.07995 * 119.99958 * 180.25493 * 22 21 20 40 40 H 1.07996 * 119.99857 * 179.77079 * 23 22 21 41 41 H 1.07996 * 119.99891 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00178 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6355 1.9708 0.8634 5 6 3.5453 1.4432 0.0706 6 1 4.1248 1.8148 -0.7615 7 6 4.1828 0.9692 1.1976 8 7 5.4965 0.9702 1.2593 9 14 3.1805 0.3269 2.6371 10 1 2.9410 -1.1283 2.4634 11 1 3.9248 0.5587 3.9011 12 1 1.8790 1.0397 2.6913 13 7 1.6072 2.1148 -1.2323 14 6 1.7777 1.2405 -2.3949 15 6 1.7510 2.0733 -3.6811 16 16 0.1257 2.8793 -3.8133 17 6 -0.0352 3.6697 -2.1830 18 6 0.2374 2.6171 -1.1030 19 1 -0.4637 1.7905 -1.2178 20 6 0.0588 3.2400 0.2575 21 6 0.9989 4.1325 0.7379 22 6 0.8325 4.7075 1.9839 23 6 -0.2687 4.3825 2.7537 24 6 -1.2057 3.4856 2.2757 25 6 -1.0421 2.9145 1.0275 26 1 -0.3634 0.7389 0.7142 27 1 -0.3634 0.2490 -0.9970 28 1 -0.3633 -0.9880 0.2828 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.9450 0.6364 2.0521 32 1 2.7327 0.7205 -2.3200 33 1 0.9696 0.5095 -2.4200 34 1 2.5336 2.8311 -3.6430 35 1 1.9085 1.4232 -4.5417 36 1 -1.0449 4.0627 -2.0646 37 1 0.6887 4.4799 -2.0957 38 1 1.8610 4.3836 0.1380 39 1 1.5648 5.4079 2.3575 40 1 -0.3967 4.8289 3.7287 41 1 -2.0658 3.2313 2.8774 42 1 -1.7743 2.2141 0.6540 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = 30.424751 kcal Electronic energy + Delta-G solvation = -22805.132344 eV Core-core repulsion = 19876.048571 eV Total energy + Delta-G solvation = -2929.083773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32980 -38.97266 -35.37336 -33.86000 -33.58430 -31.84927 -30.63167 -30.24836 -28.54017 -25.02661 -24.51798 -23.55048 -23.08294 -21.87496 -20.56145 -18.80039 -18.03781 -17.32587 -17.20262 -16.62586 -16.10750 -15.82948 -15.39023 -15.14159 -14.89181 -14.73193 -14.63586 -14.36580 -14.06617 -13.76411 -13.71420 -13.43030 -13.30634 -12.96275 -12.77740 -12.61648 -12.36871 -12.33837 -12.21503 -11.79417 -11.71521 -11.53321 -11.34592 -11.01527 -10.76469 -10.64979 -9.71105 -9.45673 -8.95073 -8.61172 -8.25933 -6.24761 0.46950 0.59267 0.89225 1.25805 1.32326 1.40328 1.56308 2.31300 2.88748 3.03512 3.13753 3.81985 3.94803 3.99588 4.07758 4.17353 4.23396 4.25093 4.29222 4.36084 4.42926 4.45307 4.46130 4.54039 4.69410 4.78207 4.84908 4.90051 4.94713 4.98376 5.06792 5.14437 5.16346 5.21432 5.29991 5.48729 5.62252 5.69277 5.70846 5.77176 6.06774 6.18515 6.44682 6.69729 6.81336 7.38577 8.90921 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.009121 C = 0.006528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.098398 B = 3069.182582 C = 4287.974832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.162 4.162 3 C 0.194 3.806 4 H 0.053 0.947 5 C -0.486 4.486 6 H 0.038 0.962 7 C 0.019 3.981 8 N -0.949 5.949 9 Si 0.929 3.071 10 H -0.272 1.272 11 H -0.300 1.300 12 H -0.248 1.248 13 N -0.535 5.535 14 C 0.065 3.935 15 C -0.066 4.066 16 S -0.283 6.283 17 C -0.056 4.056 18 C 0.117 3.883 19 H 0.076 0.924 20 C -0.079 4.079 21 C -0.101 4.101 22 C -0.139 4.139 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.124 4.124 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.262 0.738 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.089 3.701 -2.139 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.201 4.201 3 C 0.087 3.913 4 H 0.071 0.929 5 C -0.525 4.525 6 H 0.056 0.944 7 C -0.178 4.178 8 N -0.590 5.590 9 Si 0.757 3.243 10 H -0.198 1.198 11 H -0.228 1.228 12 H -0.172 1.172 13 N -0.259 5.259 14 C -0.064 4.064 15 C -0.214 4.214 16 S -0.055 6.055 17 C -0.205 4.205 18 C 0.007 3.993 19 H 0.094 0.906 20 C -0.081 4.081 21 C -0.119 4.119 22 C -0.157 4.157 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.142 4.142 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.371 4.079 -3.047 17.144 hybrid contribution 1.137 -1.063 1.825 2.399 sum -15.234 3.016 -1.222 15.578 Atomic orbital electron populations 1.22257 0.95116 1.02160 1.02168 1.22535 0.96235 1.00685 1.00667 1.19710 0.93332 0.89011 0.89264 0.92926 1.21177 0.91112 1.38843 1.01349 0.94404 1.25564 0.95326 0.96321 1.00620 1.70028 1.09354 1.49564 1.30078 0.86104 0.79910 0.79256 0.79070 1.19831 1.22762 1.17197 1.61233 1.20633 1.40198 1.03828 1.22107 1.01668 0.93780 0.88876 1.23528 0.95310 1.01695 1.00888 1.86535 1.27429 1.68004 1.23556 1.23537 1.05811 0.99457 0.91662 1.21035 0.90904 0.96105 0.91207 0.90632 1.19702 0.95391 0.97398 0.95641 1.21058 0.97987 0.96357 0.96534 1.21384 0.98718 1.00862 0.94747 1.21435 0.94311 0.98454 1.00349 1.21400 1.00094 0.97092 0.95904 1.21242 0.97597 1.00342 0.95027 0.91963 0.91398 0.92231 0.92279 0.94738 0.92906 0.91101 0.93121 0.90273 0.86123 0.86266 0.90132 0.87447 0.85569 0.84000 0.83454 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 8.23 71.98 0.59 -4.37 16 2 C -0.16 -6.46 4.49 30.60 0.14 -6.33 16 3 C 0.19 8.44 0.93 44.17 0.04 8.48 16 4 H 0.05 2.40 3.52 -2.39 -0.01 2.39 16 5 C -0.49 -26.61 8.55 25.60 0.22 -26.39 16 6 H 0.04 2.34 8.02 -2.91 -0.02 2.31 16 7 C 0.02 1.06 5.45 84.66 0.46 1.52 16 8 N -0.95 -58.78 13.96 21.45 0.30 -58.49 16 9 Si 0.93 44.76 24.69 68.60 1.69 46.46 16 10 H -0.27 -12.66 6.87 99.48 0.68 -11.98 16 11 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 12 H -0.25 -11.26 6.38 99.48 0.63 -10.63 16 13 N -0.54 -19.85 3.82 -855.89 -3.27 -23.12 16 14 C 0.07 2.22 3.84 86.47 0.33 2.55 16 15 C -0.07 -1.91 6.69 72.06 0.48 -1.43 16 16 S -0.28 -7.79 22.40 -56.49 -1.27 -9.05 16 17 C -0.06 -1.54 5.86 72.07 0.42 -1.11 16 18 C 0.12 3.56 1.30 44.34 0.06 3.62 16 19 H 0.08 2.20 4.50 -2.39 -0.01 2.19 16 20 C -0.08 -2.46 2.75 -19.87 -0.05 -2.51 16 21 C -0.10 -3.44 7.70 22.27 0.17 -3.27 16 22 C -0.14 -4.22 10.05 22.27 0.22 -3.99 16 23 C -0.13 -3.27 10.05 22.27 0.22 -3.04 16 24 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 25 C -0.12 -3.26 7.80 22.27 0.17 -3.09 16 26 H 0.06 1.90 4.65 -2.39 -0.01 1.89 16 27 H 0.07 1.92 4.58 -2.39 -0.01 1.91 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 2.35 6.26 -2.39 -0.01 2.34 16 30 H 0.03 1.50 4.02 -2.39 -0.01 1.49 16 31 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 32 H 0.07 2.80 6.89 -2.39 -0.02 2.78 16 33 H 0.05 1.61 5.85 -2.39 -0.01 1.60 16 34 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.08 2.38 8.10 -2.39 -0.02 2.36 16 38 H 0.11 4.13 7.95 -2.91 -0.02 4.11 16 39 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 42 H 0.14 3.00 7.50 -2.91 -0.02 2.98 16 Total: -1.00 -63.43 315.84 2.09 -61.35 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.92 Total: 25.05 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 3.71 Total: -42.19 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -2.97 Total: -81.61 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.69 Total: 46.46 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.27 Total: -9.05 kcal Total: -63.43 2.09 -61.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.772 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds