Wall clock time and date at job start Tue Mar 31 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 H 1.08997 * 109.47255 * 177.96776 * 3 2 1 5 5 C 1.50704 * 109.47440 * 57.96690 * 3 2 1 6 6 H 1.07995 * 119.99982 * 240.00462 * 5 3 2 7 7 C 1.37870 * 120.00034 * 59.99531 * 5 3 2 8 8 N 1.31518 * 119.99971 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00383 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47181 * 90.00180 * 9 7 5 11 11 H 1.48501 * 109.47463 * 210.00474 * 9 7 5 12 12 H 1.48506 * 109.46617 * 330.00242 * 9 7 5 13 13 N 1.46903 * 109.47180 * 297.96481 * 3 2 1 14 14 C 1.46896 * 111.00347 * 273.75090 * 13 3 2 15 15 C 1.50698 * 109.47416 * 174.92831 * 14 13 3 16 16 N 1.31494 * 118.68464 * 269.72973 * 15 14 13 17 17 C 1.33140 * 120.63719 * 179.72040 * 16 15 14 18 18 C 1.40947 * 118.81043 * 0.53507 * 17 16 15 19 19 C 1.41234 * 107.00129 * 179.73433 * 18 17 16 20 20 N 1.30224 * 108.46899 * 0.02562 * 19 18 17 21 21 N 1.36323 * 134.64440 * 180.18688 * 17 16 15 22 22 C 1.46498 * 125.87157 * 0.31824 * 21 17 16 23 23 C 1.40583 * 118.29002 * 359.73959 * 18 17 16 24 24 O 1.35369 * 120.79312 * 180.02562 * 23 18 17 25 25 N 1.32156 * 118.69395 * 90.00090 * 15 14 13 26 26 H 1.08995 * 109.47199 * 174.45231 * 1 2 3 27 27 H 1.08995 * 109.47127 * 54.44401 * 1 2 3 28 28 H 1.09001 * 109.46718 * 294.45075 * 1 2 3 29 29 H 1.08993 * 109.47337 * 120.00339 * 2 1 3 30 30 H 1.08999 * 109.46886 * 240.00595 * 2 1 3 31 31 H 0.97002 * 120.00290 * 179.97438 * 8 7 5 32 32 H 1.00907 * 111.00270 * 149.79360 * 13 3 2 33 33 H 1.09006 * 109.46730 * 294.92331 * 14 13 3 34 34 H 1.08996 * 109.47238 * 54.91793 * 14 13 3 35 35 H 1.08001 * 125.76466 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.47069 * 270.02950 * 22 21 17 37 37 H 1.09009 * 109.46827 * 30.03233 * 22 21 17 38 38 H 1.08997 * 109.47018 * 150.02594 * 22 21 17 39 39 H 0.96696 * 114.00546 * 269.98054 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0364 5 6 1.4970 2.1674 1.2045 6 1 0.8799 3.0440 1.0743 7 6 1.7878 1.7113 2.4726 8 7 2.5396 0.6438 2.6312 9 14 1.1142 2.6093 3.9656 10 1 -0.2067 2.0383 4.3324 11 1 2.0547 2.4520 5.1040 12 1 0.9590 4.0515 3.6474 13 7 1.5909 2.1207 -1.2233 14 6 2.5281 1.8858 -2.3298 15 6 1.9738 2.4897 -3.5944 16 7 1.2125 1.7469 -4.3676 17 6 0.6978 2.2427 -5.4909 18 6 0.9927 3.5753 -5.8430 19 6 0.3328 3.8355 -7.0643 20 7 -0.3071 2.7601 -7.4247 21 7 -0.1056 1.7497 -6.4757 22 6 -0.6628 0.3960 -6.5318 23 6 1.8162 4.3245 -4.9846 24 8 2.1314 5.6090 -5.2732 25 7 2.2766 3.7429 -3.8848 26 1 -0.3633 -1.0228 -0.0993 27 1 -0.3633 0.5976 -0.8360 28 1 -0.3633 0.4254 0.9355 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 2.7445 0.3231 3.5234 32 1 1.4615 3.1084 -1.0625 33 1 3.4878 2.3472 -2.0972 34 1 2.6648 0.8134 -2.4688 35 1 0.3551 4.7686 -7.6075 36 1 0.0282 -0.2596 -7.0615 37 1 -0.8135 0.0229 -5.5187 38 1 -1.6178 0.4177 -7.0568 39 1 2.9358 5.7077 -5.8007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261545819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:22 Heat of formation + Delta-G solvation = 83.688847 kcal Electronic energy + Delta-G solvation = -22955.579434 eV Core-core repulsion = 19514.804901 eV Total energy + Delta-G solvation = -3440.774532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.18964 -39.41237 -37.86333 -36.15220 -33.83022 -32.90494 -32.46947 -31.05902 -29.88803 -27.32805 -27.01246 -25.10021 -23.81137 -23.12742 -22.09328 -21.18516 -19.04117 -18.82934 -18.54268 -17.34223 -16.52979 -16.34219 -15.70166 -14.95173 -14.86291 -14.44889 -14.19786 -14.06768 -13.88939 -13.23730 -12.88306 -12.82419 -12.54128 -12.30297 -12.09958 -11.87813 -11.57627 -11.36184 -11.00045 -10.93344 -10.78943 -10.58276 -10.36600 -10.08769 -9.75369 -9.36749 -9.32299 -9.21479 -8.84714 -8.75367 -8.46296 -7.31783 -6.01022 -4.05993 0.37473 1.14245 1.88168 2.18453 3.17343 3.31619 3.38252 3.41540 3.62579 3.87952 3.95273 4.42358 4.46371 4.62382 4.79244 5.03676 5.12117 5.17529 5.30247 5.33618 5.50960 5.77224 5.97995 6.02370 6.24322 6.44979 6.55209 6.74664 6.88353 6.97446 7.09158 7.24985 7.26534 7.28368 7.50304 7.75251 7.79590 7.84232 8.15909 8.24552 8.34357 8.61583 9.01211 9.58492 11.05076 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.003843 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.527726 B = 7285.021068 C = 8011.759847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.219 3.781 4 H 0.006 0.994 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.125 3.875 15 C 0.413 3.587 16 N -0.520 5.520 17 C 0.357 3.643 18 C -0.311 4.311 19 C 0.108 3.892 20 N -0.248 5.248 21 N -0.383 5.383 22 C 0.110 3.890 23 C 0.449 3.551 24 O -0.471 6.471 25 N -0.555 5.555 26 H 0.012 0.988 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.012 0.988 31 H 0.261 0.739 32 H 0.336 0.664 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.201 0.799 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 3.429 -19.461 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.308 5.308 14 C -0.007 4.007 15 C 0.142 3.858 16 N -0.243 5.243 17 C 0.109 3.891 18 C -0.325 4.325 19 C -0.090 4.090 20 N -0.061 5.061 21 N -0.173 5.173 22 C -0.031 4.031 23 C 0.250 3.750 24 O -0.279 6.279 25 N -0.283 5.283 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.217 0.783 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -2.604 1.771 -19.335 19.589 hybrid contribution 0.851 1.683 0.652 1.996 sum -1.752 3.454 -18.683 19.080 Atomic orbital electron populations 1.21427 0.97533 0.97126 1.01494 1.21431 0.95133 0.98004 0.99447 1.19167 0.93612 0.91644 0.84412 0.97677 1.21149 1.31714 1.11998 0.90217 0.92269 1.24851 0.95039 0.95016 0.98789 1.69885 1.37307 1.23113 1.22412 0.86568 0.78752 0.80139 0.82385 1.20683 1.21316 1.19943 1.60690 1.46374 1.16884 1.06892 1.20745 0.94152 1.00350 0.85403 1.23232 0.85534 0.83576 0.93453 1.67487 1.13841 1.39556 1.03374 1.19145 0.91234 0.89216 0.89467 1.20334 1.13083 0.97325 1.01803 1.23740 0.93951 0.97764 0.93526 1.76936 1.20879 0.96532 1.11779 1.48274 1.41171 1.12110 1.15772 1.21915 0.99475 0.76821 1.04875 1.18948 0.86896 0.82956 0.86198 1.84644 1.48519 1.19484 1.75230 1.67980 1.28638 1.12750 1.18914 0.96877 0.93486 0.93046 0.89554 0.96897 0.92947 0.84625 0.92658 0.88680 0.78253 0.90769 0.88554 0.89178 0.73001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.46 37.16 0.35 -2.34 16 2 C -0.10 -2.43 5.58 -26.73 -0.15 -2.58 16 3 C 0.22 5.34 2.30 -68.86 -0.16 5.18 16 4 H 0.01 0.15 7.84 -51.93 -0.41 -0.26 16 5 C -0.51 -13.63 7.34 -34.44 -0.25 -13.89 16 6 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -24.77 11.34 55.43 0.63 -24.14 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -14.38 5.50 -109.22 -0.60 -14.98 16 14 C 0.12 2.29 5.86 -4.98 -0.03 2.26 16 15 C 0.41 7.16 7.19 -157.14 -1.13 6.03 16 16 N -0.52 -8.89 10.35 -10.10 -0.10 -8.99 16 17 C 0.36 5.47 8.04 -156.24 -1.26 4.21 16 18 C -0.31 -4.17 6.19 -106.85 -0.66 -4.84 16 19 C 0.11 1.15 12.05 -17.10 -0.21 0.94 16 20 N -0.25 -3.03 12.45 30.81 0.38 -2.65 16 21 N -0.38 -5.04 4.05 -67.24 -0.27 -5.31 16 22 C 0.11 1.04 11.47 59.85 0.69 1.73 16 23 C 0.45 6.12 7.90 -16.31 -0.13 5.99 16 24 O -0.47 -4.79 13.58 -17.80 -0.24 -5.03 16 25 N -0.56 -9.07 10.33 -10.53 -0.11 -9.18 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 28 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 29 H 0.09 2.28 6.13 -51.93 -0.32 1.97 16 30 H 0.01 0.28 7.43 -51.93 -0.39 -0.11 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.34 7.30 8.24 -39.29 -0.32 6.97 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.73 7.40 -51.93 -0.38 1.35 16 35 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.41 1.79 9.06 45.56 0.41 2.21 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -32.20 332.76 -7.60 -39.80 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.25 Total: 5.01 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -3.03 Total: 4.36 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -0.07 Total: -65.26 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.24 Total: -5.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.20 -7.60 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261545819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.488 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds