Wall clock time and date at job start Tue Mar 31 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 H 1.08997 * 109.47255 * 177.96776 * 3 2 1 5 5 C 1.50704 * 109.47440 * 57.96690 * 3 2 1 6 6 H 1.07995 * 119.99982 * 240.00462 * 5 3 2 7 7 C 1.37870 * 120.00034 * 59.99531 * 5 3 2 8 8 N 1.31518 * 119.99971 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00383 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47181 * 90.00180 * 9 7 5 11 11 H 1.48501 * 109.47463 * 210.00474 * 9 7 5 12 12 H 1.48506 * 109.46617 * 330.00242 * 9 7 5 13 13 N 1.46903 * 109.47180 * 297.96481 * 3 2 1 14 14 C 1.46896 * 111.00347 * 273.75090 * 13 3 2 15 15 C 1.50698 * 109.47416 * 174.92831 * 14 13 3 16 16 N 1.31494 * 118.68464 * 269.72973 * 15 14 13 17 17 C 1.33140 * 120.63719 * 179.72040 * 16 15 14 18 18 C 1.40947 * 118.81043 * 0.53507 * 17 16 15 19 19 C 1.41234 * 107.00129 * 179.73433 * 18 17 16 20 20 N 1.30224 * 108.46899 * 0.02562 * 19 18 17 21 21 N 1.36323 * 134.64440 * 180.18688 * 17 16 15 22 22 C 1.46498 * 125.87157 * 0.31824 * 21 17 16 23 23 C 1.40583 * 118.29002 * 359.73959 * 18 17 16 24 24 O 1.35369 * 120.79312 * 180.02562 * 23 18 17 25 25 N 1.32156 * 118.69395 * 90.00090 * 15 14 13 26 26 H 1.08995 * 109.47199 * 174.45231 * 1 2 3 27 27 H 1.08995 * 109.47127 * 54.44401 * 1 2 3 28 28 H 1.09001 * 109.46718 * 294.45075 * 1 2 3 29 29 H 1.08993 * 109.47337 * 120.00339 * 2 1 3 30 30 H 1.08999 * 109.46886 * 240.00595 * 2 1 3 31 31 H 0.97002 * 120.00290 * 179.97438 * 8 7 5 32 32 H 1.00907 * 111.00270 * 149.79360 * 13 3 2 33 33 H 1.09006 * 109.46730 * 294.92331 * 14 13 3 34 34 H 1.08996 * 109.47238 * 54.91793 * 14 13 3 35 35 H 1.08001 * 125.76466 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.47069 * 270.02950 * 22 21 17 37 37 H 1.09009 * 109.46827 * 30.03233 * 22 21 17 38 38 H 1.08997 * 109.47018 * 150.02594 * 22 21 17 39 39 H 0.96696 * 114.00546 * 269.98054 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0364 5 6 1.4970 2.1674 1.2045 6 1 0.8799 3.0440 1.0743 7 6 1.7878 1.7113 2.4726 8 7 2.5396 0.6438 2.6312 9 14 1.1142 2.6093 3.9656 10 1 -0.2067 2.0383 4.3324 11 1 2.0547 2.4520 5.1040 12 1 0.9590 4.0515 3.6474 13 7 1.5909 2.1207 -1.2233 14 6 2.5281 1.8858 -2.3298 15 6 1.9738 2.4897 -3.5944 16 7 1.2125 1.7469 -4.3676 17 6 0.6978 2.2427 -5.4909 18 6 0.9927 3.5753 -5.8430 19 6 0.3328 3.8355 -7.0643 20 7 -0.3071 2.7601 -7.4247 21 7 -0.1056 1.7497 -6.4757 22 6 -0.6628 0.3960 -6.5318 23 6 1.8162 4.3245 -4.9846 24 8 2.1314 5.6090 -5.2732 25 7 2.2766 3.7429 -3.8848 26 1 -0.3633 -1.0228 -0.0993 27 1 -0.3633 0.5976 -0.8360 28 1 -0.3633 0.4254 0.9355 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 2.7445 0.3231 3.5234 32 1 1.4615 3.1084 -1.0625 33 1 3.4878 2.3472 -2.0972 34 1 2.6648 0.8134 -2.4688 35 1 0.3551 4.7686 -7.6075 36 1 0.0282 -0.2596 -7.0615 37 1 -0.8135 0.0229 -5.5187 38 1 -1.6178 0.4177 -7.0568 39 1 2.9358 5.7077 -5.8007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261545819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:17 Heat of formation + Delta-G solvation = 58.055984 kcal Electronic energy + Delta-G solvation = -22956.690958 eV Core-core repulsion = 19514.804901 eV Total energy + Delta-G solvation = -3441.886057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.21804 -40.46041 -38.88669 -37.88488 -34.76176 -34.67159 -33.57541 -32.81629 -31.25253 -28.80777 -28.08940 -26.76101 -25.04879 -24.84295 -23.33826 -22.13939 -20.93979 -19.84954 -19.58764 -18.48926 -18.21310 -17.43763 -16.93340 -16.62155 -15.98838 -15.76659 -15.54697 -15.49953 -15.23692 -14.65938 -14.33028 -14.01103 -13.72964 -13.62047 -13.51165 -13.18464 -13.08508 -12.82699 -12.67450 -12.47935 -12.38165 -12.04883 -11.98988 -11.72928 -11.56311 -11.29342 -10.79000 -10.52184 -10.47925 -10.27919 -9.82811 -9.08136 -8.07448 -6.18658 -0.68141 0.03721 0.95650 1.28079 1.43814 1.45475 1.54506 2.20451 2.40415 2.49894 2.76793 2.98608 3.21934 3.44750 3.63254 3.80757 3.89779 4.13869 4.35276 4.38810 4.49816 4.59309 4.63294 4.67815 4.83094 4.96498 4.97784 5.18769 5.32112 5.39809 5.43011 5.56986 5.73723 5.82040 5.89584 5.90428 6.23168 6.28679 6.42965 6.52581 6.72026 6.97984 7.02232 7.49223 8.97817 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.003843 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.527726 B = 7285.021068 C = 8011.759847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C 0.225 3.775 4 H -0.022 1.022 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.673 5.673 14 C 0.132 3.868 15 C 0.402 3.598 16 N -0.539 5.539 17 C 0.330 3.670 18 C -0.313 4.313 19 C 0.124 3.876 20 N -0.258 5.258 21 N -0.386 5.386 22 C 0.102 3.898 23 C 0.458 3.542 24 O -0.466 6.466 25 N -0.579 5.579 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.332 0.668 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.246 0.754 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 4.617 -21.197 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.117 3.883 4 H -0.005 1.005 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.304 5.304 14 C 0.001 3.999 15 C 0.131 3.869 16 N -0.263 5.263 17 C 0.082 3.918 18 C -0.328 4.328 19 C -0.072 4.072 20 N -0.071 5.071 21 N -0.176 5.176 22 C -0.037 4.037 23 C 0.260 3.740 24 O -0.278 6.278 25 N -0.308 5.308 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.262 0.738 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -3.461 2.969 -21.131 21.617 hybrid contribution 1.127 1.373 1.033 2.055 sum -2.333 4.342 -20.097 20.693 Atomic orbital electron populations 1.21276 0.96414 0.98314 1.00267 1.21307 0.95992 0.97477 0.98750 1.18951 0.91788 0.92187 0.85339 1.00479 1.21382 1.31587 1.11981 0.91317 0.92839 1.25536 0.95299 0.95687 1.01248 1.70003 1.38176 1.24166 1.22904 0.85650 0.78102 0.79135 0.79302 1.20404 1.20956 1.19542 1.60572 1.47206 1.16292 1.06341 1.20594 0.93688 1.00378 0.85276 1.22730 0.86598 0.84269 0.93330 1.67350 1.14401 1.40129 1.04413 1.19425 0.92123 0.90568 0.89636 1.20558 1.12974 0.96576 1.02681 1.24442 0.91850 0.98724 0.92223 1.76959 1.21536 0.96871 1.11737 1.48650 1.40517 1.13174 1.15245 1.22149 1.00833 0.75767 1.04953 1.18999 0.86066 0.83613 0.85274 1.84607 1.50227 1.17225 1.75740 1.67930 1.29772 1.12555 1.20537 0.94687 0.93425 0.95129 0.92091 0.95625 0.92942 0.85062 0.92586 0.88978 0.73802 0.89272 0.89374 0.87074 0.69912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.46 71.98 0.68 -4.09 16 2 C -0.10 -4.69 5.58 30.60 0.17 -4.52 16 3 C 0.23 11.27 2.30 44.17 0.10 11.38 16 4 H -0.02 -1.22 7.84 -2.39 -0.02 -1.24 16 5 C -0.52 -28.35 7.34 25.60 0.19 -28.16 16 6 H 0.05 2.90 7.60 -2.91 -0.02 2.87 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -51.72 11.34 21.45 0.24 -51.48 16 9 Si 0.95 43.53 29.54 68.60 2.03 45.55 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 N -0.67 -29.16 5.50 -499.46 -2.75 -31.91 16 14 C 0.13 4.95 5.86 85.56 0.50 5.45 16 15 C 0.40 14.02 7.19 138.73 1.00 15.02 16 16 N -0.54 -18.42 10.35 -185.88 -1.92 -20.34 16 17 C 0.33 9.79 8.04 134.18 1.08 10.87 16 18 C -0.31 -7.77 6.19 -21.31 -0.13 -7.90 16 19 C 0.12 2.24 12.05 85.67 1.03 3.27 16 20 N -0.26 -5.63 12.45 -56.43 -0.70 -6.34 16 21 N -0.39 -9.56 4.05 -366.65 -1.48 -11.04 16 22 C 0.10 1.81 11.47 127.77 1.47 3.28 16 23 C 0.46 11.69 7.90 85.14 0.67 12.36 16 24 O -0.47 -8.15 13.58 -86.60 -1.18 -9.33 16 25 N -0.58 -18.63 10.33 -300.05 -3.10 -21.72 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 2.12 7.50 -2.39 -0.02 2.10 16 28 H 0.03 1.48 7.37 -2.39 -0.02 1.46 16 29 H 0.06 3.29 6.13 -2.39 -0.01 3.28 16 30 H 0.03 1.14 7.43 -2.39 -0.02 1.13 16 31 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.33 14.73 8.24 -89.69 -0.74 13.99 16 33 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.09 3.45 7.40 -2.39 -0.02 3.43 16 35 H 0.25 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.44 2.38 9.06 -74.06 -0.67 1.71 16 Total: -1.00 -69.62 332.76 -1.96 -71.58 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -0.31 Total: 16.44 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 7.21 Total: 18.58 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -9.71 Total: -142.82 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.18 Total: -9.33 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -69.62 -1.96 -71.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261545819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.640 kcal (2) G-P(sol) polarization free energy of solvation -69.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds