Wall clock time and date at job start Tue Mar 31 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47393 * 2 1 4 4 H 1.09004 * 109.47328 * 179.62209 * 3 2 1 5 5 C 1.50697 * 109.47047 * 299.61865 * 3 2 1 6 6 H 1.08005 * 120.00440 * 120.00066 * 5 3 2 7 7 C 1.37875 * 119.99977 * 299.99960 * 5 3 2 8 8 N 1.31514 * 120.00122 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47280 * 60.00320 * 9 7 5 11 11 H 1.48503 * 109.46950 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47247 * 299.99848 * 9 7 5 13 13 N 1.46896 * 109.47372 * 59.61968 * 3 2 1 14 14 C 1.46897 * 111.00215 * 86.27891 * 13 3 2 15 15 C 1.50704 * 109.47247 * 184.98321 * 14 13 3 16 16 N 1.31492 * 118.68983 * 269.73268 * 15 14 13 17 17 C 1.33129 * 120.63264 * 179.71753 * 16 15 14 18 18 C 1.40948 * 118.81834 * 0.54192 * 17 16 15 19 19 C 1.41233 * 107.00389 * 179.73185 * 18 17 16 20 20 N 1.30229 * 108.46951 * 0.02562 * 19 18 17 21 21 N 1.36327 * 134.63977 * 180.18022 * 17 16 15 22 22 C 1.46498 * 125.86836 * 0.33451 * 21 17 16 23 23 C 1.40580 * 118.28485 * 359.73482 * 18 17 16 24 24 O 1.35366 * 120.79181 * 180.02562 * 23 18 17 25 25 N 1.32156 * 118.68727 * 90.00189 * 15 14 13 26 26 H 1.08999 * 109.47310 * 295.92185 * 1 2 3 27 27 H 1.09003 * 109.46945 * 55.92231 * 1 2 3 28 28 H 1.09004 * 109.47274 * 175.92017 * 1 2 3 29 29 H 1.08999 * 109.47146 * 239.99512 * 2 1 3 30 30 H 1.08998 * 109.47127 * 120.00287 * 2 1 3 31 31 H 0.97002 * 119.99859 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00014 * 210.23877 * 13 3 2 33 33 H 1.09005 * 109.47325 * 304.98334 * 14 13 3 34 34 H 1.09001 * 109.46914 * 64.98303 * 14 13 3 35 35 H 1.07995 * 125.76811 * 180.02562 * 19 18 17 36 36 H 1.09006 * 109.47213 * 269.97152 * 22 21 17 37 37 H 1.08999 * 109.47246 * 29.97288 * 22 21 17 38 38 H 1.09001 * 109.47037 * 149.97631 * 22 21 17 39 39 H 0.96696 * 114.00319 * 269.97760 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4424 0.0068 5 6 1.5455 2.1501 -1.2351 6 1 0.9240 3.0285 -1.1420 7 6 1.8864 1.6762 -2.4842 8 7 2.6436 0.6070 -2.5978 9 14 1.2727 2.5531 -4.0153 10 1 1.7672 3.9533 -4.0156 11 1 1.7759 1.8508 -5.2231 12 1 -0.2123 2.5525 -4.0244 13 7 1.5429 2.1376 1.1948 14 6 2.4357 1.9191 2.3407 15 6 1.8329 2.5425 3.5732 16 7 2.1283 3.7919 3.8576 17 6 1.6131 4.3827 4.9336 18 6 0.7539 3.6415 5.7698 19 6 0.3636 4.4973 6.8234 20 7 0.9320 5.6555 6.6464 21 7 1.7156 5.6249 5.4858 22 6 2.5084 6.7370 4.9559 23 6 0.4750 2.3078 5.4239 24 8 -0.3437 1.5498 6.1905 25 7 1.0328 1.8100 4.3280 26 1 -0.3634 0.4492 0.9243 27 1 -0.3633 0.5758 -0.8512 28 1 -0.3634 -1.0251 -0.0731 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 2.8837 0.2739 -3.4766 32 1 1.4199 3.1228 1.0149 33 1 2.5655 0.8488 2.5013 34 1 3.4044 2.3763 2.1389 35 1 -0.2951 4.2354 7.6382 36 1 3.5128 6.7007 5.3779 37 1 2.5672 6.6566 3.8704 38 1 2.0352 7.6813 5.2251 39 1 0.1126 1.0607 6.8888 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261545820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:33 Heat of formation + Delta-G solvation = 83.699103 kcal Electronic energy + Delta-G solvation = -22931.165333 eV Core-core repulsion = 19490.391245 eV Total energy + Delta-G solvation = -3440.774087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -42.19635 -39.40595 -37.85624 -36.14734 -33.84718 -32.88144 -32.49261 -31.06908 -29.86872 -27.32996 -27.03897 -25.11668 -23.79526 -23.08637 -22.09900 -21.21924 -19.03268 -18.77317 -18.57714 -17.37061 -16.45939 -16.38643 -15.71858 -14.94498 -14.85523 -14.46026 -14.28599 -14.07557 -13.81973 -13.23370 -12.91063 -12.82099 -12.51033 -12.33218 -12.07472 -11.88149 -11.62876 -11.29378 -10.99791 -10.90268 -10.80993 -10.62674 -10.35968 -10.07970 -9.72922 -9.35923 -9.31713 -9.21389 -8.85885 -8.76571 -8.45896 -7.30962 -6.01259 -4.06690 0.36497 1.15672 1.86235 2.17342 3.19776 3.32146 3.36775 3.39625 3.62279 3.84927 3.95083 4.41613 4.46900 4.61349 4.79345 5.00280 5.10361 5.17267 5.29145 5.29601 5.48849 5.81139 5.96634 6.01791 6.22368 6.43126 6.59593 6.75078 6.91669 6.97515 7.09905 7.26740 7.27308 7.32421 7.50850 7.77573 7.78966 7.85308 8.15911 8.25649 8.35114 8.61184 9.00322 9.57723 11.04576 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.003901 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.974156 B = 7175.729591 C = 8040.575358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.219 3.781 4 H 0.005 0.995 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.675 5.675 14 C 0.125 3.875 15 C 0.415 3.585 16 N -0.537 5.537 17 C 0.357 3.643 18 C -0.311 4.311 19 C 0.109 3.891 20 N -0.249 5.249 21 N -0.384 5.384 22 C 0.110 3.890 23 C 0.448 3.552 24 O -0.470 6.470 25 N -0.539 5.539 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.013 0.987 29 H 0.087 0.913 30 H 0.012 0.988 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.201 0.799 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 6.154 18.732 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.307 5.307 14 C -0.006 4.006 15 C 0.144 3.856 16 N -0.261 5.261 17 C 0.110 3.890 18 C -0.325 4.325 19 C -0.089 4.089 20 N -0.062 5.062 21 N -0.174 5.174 22 C -0.031 4.031 23 C 0.250 3.750 24 O -0.278 6.278 25 N -0.266 5.266 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.106 0.894 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.218 0.782 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.766 6.753 18.035 19.273 hybrid contribution 0.194 0.439 -0.335 0.586 sum -0.573 7.192 17.700 19.114 Atomic orbital electron populations 1.21443 0.97469 0.97439 1.01369 1.21440 0.95135 0.97952 0.99599 1.19169 0.93159 0.91536 0.84910 0.97734 1.21108 1.31823 1.12027 0.90226 0.92372 1.24854 0.94995 0.94980 0.98837 1.69869 1.36415 1.22602 1.23752 0.86628 0.79255 0.79605 0.82315 1.20410 1.21324 1.20222 1.60691 1.47921 1.16558 1.05536 1.20757 0.93886 1.00213 0.85791 1.23249 0.85954 0.83308 0.93044 1.67469 1.29505 1.12184 1.16950 1.19077 0.92010 0.87308 0.90619 1.20340 1.10360 0.98581 1.03248 1.23748 0.98117 0.89057 0.97969 1.76942 1.07666 1.21473 1.00110 1.48273 1.40940 1.08537 1.19697 1.21901 0.94145 0.86796 1.00210 1.19007 0.83502 0.85340 0.87178 1.84647 1.32719 1.63279 1.47159 1.67990 1.12088 1.40223 1.06320 0.93801 0.92687 0.96751 0.89427 0.96878 0.92861 0.84813 0.88484 0.92866 0.78227 0.90783 0.88699 0.89160 0.73000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.52 37.16 0.35 -2.40 16 2 C -0.10 -2.48 5.59 -26.73 -0.15 -2.63 16 3 C 0.22 5.36 2.30 -68.87 -0.16 5.21 16 4 H 0.01 0.13 7.84 -51.93 -0.41 -0.27 16 5 C -0.51 -13.64 7.28 -34.44 -0.25 -13.89 16 6 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 7 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 8 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.67 -14.37 5.56 -109.22 -0.61 -14.98 16 14 C 0.12 2.29 5.86 -4.98 -0.03 2.27 16 15 C 0.41 7.20 7.19 -157.14 -1.13 6.07 16 16 N -0.54 -8.97 10.35 -10.10 -0.10 -9.08 16 17 C 0.36 5.40 8.04 -156.25 -1.26 4.14 16 18 C -0.31 -4.17 6.19 -106.85 -0.66 -4.84 16 19 C 0.11 1.15 12.05 -17.09 -0.21 0.95 16 20 N -0.25 -3.02 12.45 30.81 0.38 -2.63 16 21 N -0.38 -4.97 4.05 -67.24 -0.27 -5.24 16 22 C 0.11 1.01 11.47 59.85 0.69 1.70 16 23 C 0.45 6.22 7.90 -16.31 -0.13 6.09 16 24 O -0.47 -4.92 13.58 -17.79 -0.24 -5.16 16 25 N -0.54 -9.04 10.33 -10.53 -0.11 -9.15 16 26 H 0.04 0.99 7.72 -51.93 -0.40 0.59 16 27 H 0.05 1.35 7.09 -51.93 -0.37 0.98 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 30 H 0.01 0.29 7.48 -51.93 -0.39 -0.10 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 32 H 0.33 7.20 8.24 -39.29 -0.32 6.88 16 33 H 0.10 1.77 7.43 -51.93 -0.39 1.39 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.41 1.87 9.06 45.56 0.41 2.28 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -32.29 332.78 -7.60 -39.89 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -4.25 Total: 5.09 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -3.02 Total: 4.33 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.08 Total: -65.20 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.24 Total: -5.16 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.29 -7.60 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261545820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.586 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds