Wall clock time and date at job start Tue Mar 31 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47393 * 2 1 4 4 H 1.09004 * 109.47328 * 179.62209 * 3 2 1 5 5 C 1.50697 * 109.47047 * 299.61865 * 3 2 1 6 6 H 1.08005 * 120.00440 * 120.00066 * 5 3 2 7 7 C 1.37875 * 119.99977 * 299.99960 * 5 3 2 8 8 N 1.31514 * 120.00122 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47280 * 60.00320 * 9 7 5 11 11 H 1.48503 * 109.46950 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47247 * 299.99848 * 9 7 5 13 13 N 1.46896 * 109.47372 * 59.61968 * 3 2 1 14 14 C 1.46897 * 111.00215 * 86.27891 * 13 3 2 15 15 C 1.50704 * 109.47247 * 184.98321 * 14 13 3 16 16 N 1.31492 * 118.68983 * 269.73268 * 15 14 13 17 17 C 1.33129 * 120.63264 * 179.71753 * 16 15 14 18 18 C 1.40948 * 118.81834 * 0.54192 * 17 16 15 19 19 C 1.41233 * 107.00389 * 179.73185 * 18 17 16 20 20 N 1.30229 * 108.46951 * 0.02562 * 19 18 17 21 21 N 1.36327 * 134.63977 * 180.18022 * 17 16 15 22 22 C 1.46498 * 125.86836 * 0.33451 * 21 17 16 23 23 C 1.40580 * 118.28485 * 359.73482 * 18 17 16 24 24 O 1.35366 * 120.79181 * 180.02562 * 23 18 17 25 25 N 1.32156 * 118.68727 * 90.00189 * 15 14 13 26 26 H 1.08999 * 109.47310 * 295.92185 * 1 2 3 27 27 H 1.09003 * 109.46945 * 55.92231 * 1 2 3 28 28 H 1.09004 * 109.47274 * 175.92017 * 1 2 3 29 29 H 1.08999 * 109.47146 * 239.99512 * 2 1 3 30 30 H 1.08998 * 109.47127 * 120.00287 * 2 1 3 31 31 H 0.97002 * 119.99859 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00014 * 210.23877 * 13 3 2 33 33 H 1.09005 * 109.47325 * 304.98334 * 14 13 3 34 34 H 1.09001 * 109.46914 * 64.98303 * 14 13 3 35 35 H 1.07995 * 125.76811 * 180.02562 * 19 18 17 36 36 H 1.09006 * 109.47213 * 269.97152 * 22 21 17 37 37 H 1.08999 * 109.47246 * 29.97288 * 22 21 17 38 38 H 1.09001 * 109.47037 * 149.97631 * 22 21 17 39 39 H 0.96696 * 114.00319 * 269.97760 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4424 0.0068 5 6 1.5455 2.1501 -1.2351 6 1 0.9240 3.0285 -1.1420 7 6 1.8864 1.6762 -2.4842 8 7 2.6436 0.6070 -2.5978 9 14 1.2727 2.5531 -4.0153 10 1 1.7672 3.9533 -4.0156 11 1 1.7759 1.8508 -5.2231 12 1 -0.2123 2.5525 -4.0244 13 7 1.5429 2.1376 1.1948 14 6 2.4357 1.9191 2.3407 15 6 1.8329 2.5425 3.5732 16 7 2.1283 3.7919 3.8576 17 6 1.6131 4.3827 4.9336 18 6 0.7539 3.6415 5.7698 19 6 0.3636 4.4973 6.8234 20 7 0.9320 5.6555 6.6464 21 7 1.7156 5.6249 5.4858 22 6 2.5084 6.7370 4.9559 23 6 0.4750 2.3078 5.4239 24 8 -0.3437 1.5498 6.1905 25 7 1.0328 1.8100 4.3280 26 1 -0.3634 0.4492 0.9243 27 1 -0.3633 0.5758 -0.8512 28 1 -0.3634 -1.0251 -0.0731 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 2.8837 0.2739 -3.4766 32 1 1.4199 3.1228 1.0149 33 1 2.5655 0.8488 2.5013 34 1 3.4044 2.3763 2.1389 35 1 -0.2951 4.2354 7.6382 36 1 3.5128 6.7007 5.3779 37 1 2.5672 6.6566 3.8704 38 1 2.0352 7.6813 5.2251 39 1 0.1126 1.0607 6.8888 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261545820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:27 Heat of formation + Delta-G solvation = 57.984213 kcal Electronic energy + Delta-G solvation = -22932.280414 eV Core-core repulsion = 19490.391245 eV Total energy + Delta-G solvation = -3441.889169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 4.99 seconds Orbital eigenvalues (eV) -43.22339 -40.45653 -38.88804 -37.88039 -34.77746 -34.65934 -33.57529 -32.83178 -31.23865 -28.81471 -28.10039 -26.77401 -25.08764 -24.75540 -23.35447 -22.16560 -20.93783 -19.76709 -19.64943 -18.54333 -18.16911 -17.43980 -16.89210 -16.65201 -15.97773 -15.83418 -15.54638 -15.47722 -15.23988 -14.65632 -14.29384 -14.01005 -13.70142 -13.63595 -13.52497 -13.30705 -12.99116 -12.79927 -12.69518 -12.48100 -12.37204 -12.04621 -11.94655 -11.78212 -11.55416 -11.28336 -10.79538 -10.51138 -10.48228 -10.27464 -9.84348 -9.07471 -8.07341 -6.19025 -0.69427 0.05086 0.94303 1.27060 1.44510 1.45830 1.52879 2.22522 2.40131 2.49616 2.74512 2.98480 3.21647 3.45885 3.62999 3.79348 3.88655 4.14415 4.33396 4.37444 4.50843 4.58826 4.61203 4.70661 4.83565 4.95449 4.99399 5.18437 5.33364 5.40219 5.42911 5.57302 5.73382 5.83212 5.89860 5.90979 6.22860 6.29958 6.43018 6.54235 6.71802 6.97605 7.02036 7.48803 8.97550 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.003901 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.974156 B = 7175.729591 C = 8040.575358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.226 3.774 4 H -0.023 1.023 5 C -0.525 4.525 6 H 0.053 0.947 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.132 3.868 15 C 0.404 3.596 16 N -0.553 5.553 17 C 0.331 3.669 18 C -0.313 4.313 19 C 0.125 3.875 20 N -0.258 5.258 21 N -0.387 5.387 22 C 0.102 3.898 23 C 0.457 3.543 24 O -0.466 6.466 25 N -0.567 5.567 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.262 0.738 32 H 0.331 0.669 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 6.921 20.487 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.118 3.882 4 H -0.005 1.005 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.303 5.303 14 C 0.001 3.999 15 C 0.133 3.867 16 N -0.277 5.277 17 C 0.083 3.917 18 C -0.328 4.328 19 C -0.072 4.072 20 N -0.071 5.071 21 N -0.176 5.176 22 C -0.037 4.037 23 C 0.260 3.740 24 O -0.278 6.278 25 N -0.295 5.295 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.262 0.738 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -1.937 7.539 19.849 21.321 hybrid contribution 0.541 0.227 -0.712 0.923 sum -1.396 7.766 19.137 20.700 Atomic orbital electron populations 1.21290 0.96368 0.98276 1.00448 1.21321 0.95971 0.97490 0.98889 1.18951 0.91406 0.92068 0.85776 1.00523 1.21352 1.31676 1.12024 0.91338 0.92847 1.25547 0.95163 0.95611 1.01462 1.69992 1.37273 1.23664 1.24254 0.85700 0.78665 0.78701 0.79068 1.19865 1.20974 1.19999 1.60575 1.48573 1.16009 1.05172 1.20605 0.93508 1.00292 0.85521 1.22742 0.87044 0.83831 0.93097 1.67342 1.30171 1.12066 1.18124 1.19364 0.92914 0.88564 0.90822 1.20560 1.09954 0.98533 1.03723 1.24445 0.97383 0.87539 0.97826 1.76965 1.08021 1.22250 0.99905 1.48652 1.40923 1.08394 1.19677 1.22149 0.94864 0.86730 0.99969 1.19053 0.82547 0.85834 0.86607 1.84609 1.32307 1.63273 1.47621 1.67929 1.13166 1.40747 1.07699 0.93568 0.94728 0.94827 0.91951 0.95657 0.92904 0.85183 0.88693 0.92902 0.73813 0.89332 0.89318 0.87074 0.69910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.86 9.52 71.98 0.69 -4.17 16 2 C -0.10 -4.79 5.59 30.59 0.17 -4.62 16 3 C 0.23 11.32 2.30 44.17 0.10 11.42 16 4 H -0.02 -1.25 7.84 -2.38 -0.02 -1.27 16 5 C -0.53 -28.37 7.28 25.60 0.19 -28.19 16 6 H 0.05 2.88 7.60 -2.91 -0.02 2.85 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -51.67 11.32 21.45 0.24 -51.43 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 N -0.67 -29.16 5.56 -499.47 -2.78 -31.94 16 14 C 0.13 4.96 5.86 85.56 0.50 5.46 16 15 C 0.40 14.10 7.19 138.73 1.00 15.09 16 16 N -0.55 -18.51 10.35 -185.87 -1.92 -20.43 16 17 C 0.33 9.70 8.04 134.18 1.08 10.77 16 18 C -0.31 -7.78 6.19 -21.31 -0.13 -7.91 16 19 C 0.12 2.25 12.05 85.67 1.03 3.28 16 20 N -0.26 -5.60 12.45 -56.43 -0.70 -6.31 16 21 N -0.39 -9.42 4.05 -366.64 -1.48 -10.91 16 22 C 0.10 1.76 11.47 127.77 1.47 3.22 16 23 C 0.46 11.86 7.90 85.14 0.67 12.53 16 24 O -0.47 -8.40 13.58 -86.57 -1.18 -9.58 16 25 N -0.57 -18.65 10.33 -300.05 -3.10 -21.75 16 26 H 0.05 2.05 7.72 -2.39 -0.02 2.04 16 27 H 0.03 1.69 7.09 -2.39 -0.02 1.67 16 28 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.06 3.38 6.06 -2.39 -0.01 3.37 16 30 H 0.02 1.14 7.48 -2.39 -0.02 1.12 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.33 14.62 8.24 -89.69 -0.74 13.88 16 33 H 0.09 3.55 7.43 -2.38 -0.02 3.53 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.25 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.39 16 39 H 0.44 2.55 9.06 -74.06 -0.67 1.88 16 Total: -1.00 -69.67 332.78 -1.99 -71.66 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.31 Total: 16.74 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 7.21 Total: 18.53 kcal Atomic # 7 Polarization: -133.02 SS G_CDS: -9.74 Total: -142.76 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.18 Total: -9.58 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.67 -1.99 -71.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261545820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.648 kcal (2) G-P(sol) polarization free energy of solvation -69.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.99 seconds