Wall clock time and date at job start Tue Mar 31 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34655 * 126.52523 * 2 1 4 4 C 1.33959 * 108.12865 * 180.24166 * 3 2 1 5 5 N 1.30084 * 109.17962 * 359.75479 * 4 3 2 6 6 C 1.35786 * 126.52628 * 179.82378 * 2 1 3 7 7 C 1.47872 * 126.40181 * 0.03158 * 6 2 1 8 8 N 1.31258 * 126.48002 * 359.67776 * 7 6 2 9 9 N 1.28508 * 109.95660 * 180.02562 * 8 7 6 10 10 C 1.31256 * 110.10506 * 0.02562 * 9 8 7 11 11 N 1.38532 * 126.37161 * 180.02562 * 10 9 8 12 12 C 1.46894 * 111.00172 * 306.58192 * 11 10 9 13 13 C 1.46901 * 110.99850 * 70.53905 * 11 10 9 14 14 H 1.09000 * 109.47565 * 54.99238 * 13 11 10 15 15 C 1.53007 * 109.47085 * 294.99410 * 13 11 10 16 16 C 1.50694 * 109.47305 * 174.99724 * 13 11 10 17 17 H 1.08005 * 119.99964 * 359.97438 * 16 13 11 18 18 C 1.37880 * 120.00187 * 179.97438 * 16 13 11 19 19 N 1.31507 * 119.99955 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99902 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47151 * 119.99841 * 20 18 16 23 23 H 1.48500 * 109.46865 * 239.99576 * 20 18 16 24 24 N 1.36611 * 107.24855 * 359.97438 * 10 9 8 25 25 C 1.46496 * 127.17343 * 179.74334 * 24 10 9 26 26 H 1.08999 * 109.47544 * 270.16787 * 1 2 3 27 27 H 1.08994 * 109.47182 * 30.17585 * 1 2 3 28 28 H 1.09004 * 109.46994 * 150.17547 * 1 2 3 29 29 H 1.07998 * 125.40934 * 179.75600 * 4 3 2 30 30 H 1.08999 * 109.47406 * 54.55360 * 12 11 10 31 31 H 1.09003 * 109.47027 * 174.55462 * 12 11 10 32 32 H 1.09002 * 109.46986 * 294.55402 * 12 11 10 33 33 H 1.09005 * 109.46509 * 59.99862 * 15 13 11 34 34 H 1.08998 * 109.47306 * 180.02562 * 15 13 11 35 35 H 1.08994 * 109.47094 * 300.00634 * 15 13 11 36 36 H 0.97006 * 119.99898 * 180.02562 * 19 18 16 37 37 H 1.08995 * 109.47239 * 95.32351 * 25 24 10 38 38 H 1.08998 * 109.47062 * 215.32746 * 25 24 10 39 39 H 1.08999 * 109.46888 * 335.32585 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3084 1.0821 0.0000 4 6 3.5795 0.6593 -0.0054 5 7 3.5973 -0.6414 -0.0034 6 6 2.3151 -1.0911 0.0034 7 6 1.8810 -2.5047 0.0070 8 7 0.6431 -2.9409 0.0136 9 7 0.6307 -4.2259 0.0156 10 6 1.8589 -4.6888 0.0110 11 7 2.2342 -6.0224 0.0109 12 6 1.5947 -6.7493 1.1156 13 6 1.9316 -6.6543 -1.2802 14 1 2.4018 -6.0854 -2.0823 15 6 0.4166 -6.6793 -1.4931 16 6 2.4630 -8.0644 -1.2862 17 1 2.9748 -8.4523 -0.4178 18 6 2.2958 -8.8595 -2.4002 19 7 1.6722 -8.3874 -3.4574 20 14 2.9539 -10.6077 -2.4072 21 1 3.6096 -10.8950 -1.1061 22 1 1.8323 -11.5581 -2.6174 23 1 3.9435 -10.7597 -3.5040 24 7 2.6982 -3.6109 0.0052 25 6 4.1630 -3.6295 0.0038 26 1 -0.3634 0.0030 1.0276 27 1 -0.3633 0.8883 -0.5165 28 1 -0.3633 -0.8916 -0.5111 29 1 4.4511 1.2971 -0.0105 30 1 0.5148 -6.6105 1.0650 31 1 1.8288 -7.8109 1.0356 32 1 1.9661 -6.3660 2.0660 33 1 0.0323 -5.6593 -1.4888 34 1 0.1920 -7.1486 -2.4509 35 1 -0.0536 -7.2481 -0.6911 36 1 1.5543 -8.9469 -4.2410 37 1 4.5265 -3.5436 -1.0201 38 1 4.5375 -2.7930 0.5938 39 1 4.5148 -4.5659 0.4369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262927118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:06 Heat of formation + Delta-G solvation = 125.441034 kcal Electronic energy + Delta-G solvation = -23576.464062 eV Core-core repulsion = 20137.500041 eV Total energy + Delta-G solvation = -3438.964021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.50314 -42.36892 -37.25988 -35.24570 -34.31411 -33.03762 -32.65517 -29.62452 -28.61169 -27.34472 -26.88023 -25.30004 -25.19591 -23.40359 -22.34905 -21.30403 -20.42332 -19.39039 -17.68903 -16.98090 -16.49272 -16.17033 -15.87086 -15.34981 -14.89587 -14.70262 -14.56965 -13.68668 -13.53013 -13.21933 -13.12810 -12.85280 -12.61012 -12.37945 -12.27508 -11.69978 -11.50658 -11.32236 -11.21945 -10.95803 -10.81198 -10.79717 -10.57659 -10.24677 -10.15899 -9.97563 -9.76689 -9.37051 -8.91635 -8.47209 -8.14531 -7.71020 -6.08508 -4.14818 1.04341 1.83456 2.44274 2.68341 2.73387 3.26433 3.34396 3.37683 3.40801 3.67493 4.33067 4.48905 4.58310 4.68430 5.02795 5.19337 5.23998 5.33543 5.43601 5.51421 5.64782 5.75374 5.78411 5.83764 6.00146 6.02644 6.21077 6.36944 6.41901 6.60873 6.82697 6.97561 7.04774 7.14585 7.40065 7.50097 7.62668 7.74004 7.90454 8.24049 8.43587 8.88551 9.10457 9.50057 10.98329 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030059 B = 0.003908 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.292926 B = 7163.674005 C = 7425.319884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.014 3.986 3 O -0.202 6.202 4 C 0.175 3.825 5 N -0.476 5.476 6 C 0.056 3.944 7 C 0.228 3.772 8 N -0.273 5.273 9 N -0.308 5.308 10 C 0.386 3.614 11 N -0.471 5.471 12 C 0.044 3.956 13 C 0.224 3.776 14 H 0.036 0.964 15 C -0.173 4.173 16 C -0.507 4.507 17 H 0.067 0.933 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.457 5.457 25 C 0.088 3.912 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.254 0.746 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 16.621 7.377 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.043 4.043 3 O -0.088 6.088 4 C -0.053 4.053 5 N -0.205 5.205 6 C -0.064 4.064 7 C -0.036 4.036 8 N -0.118 5.118 9 N -0.153 5.153 10 C 0.031 3.969 11 N -0.197 5.197 12 C -0.103 4.103 13 C 0.119 3.881 14 H 0.054 0.946 15 C -0.232 4.232 16 C -0.546 4.546 17 H 0.085 0.915 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.148 5.148 25 C -0.055 4.055 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.269 0.731 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.504 16.162 7.262 17.895 hybrid contribution 0.798 -0.506 -0.349 1.008 sum 3.302 15.656 6.913 17.430 Atomic orbital electron populations 1.20512 0.82542 1.05328 1.04473 1.23487 0.95062 0.82835 1.02909 1.84429 1.18327 1.36059 1.70008 1.27894 0.85604 0.90821 1.00996 1.70619 1.21690 1.10289 1.17936 1.18114 0.88429 0.89498 1.10323 1.20837 0.87655 0.85504 1.09651 1.74176 1.15317 1.04561 1.17708 1.74731 1.17797 1.01511 1.21224 1.22882 0.84605 0.89790 0.99643 1.59409 1.57493 0.93883 1.08917 1.22264 0.97517 0.99900 0.90621 1.19432 0.92859 0.94060 0.81717 0.94581 1.22439 0.98162 0.99191 1.03396 1.21038 1.36699 0.95958 1.00914 0.91475 1.24914 0.95106 0.98663 0.95318 1.69919 1.41699 1.36645 1.04409 0.86396 0.78588 0.84056 0.78099 1.19625 1.20984 1.21030 1.46203 1.09102 1.05506 1.54028 1.22023 0.74757 1.04797 1.03956 0.89275 0.90394 0.86861 0.73067 0.93986 0.88948 0.93680 0.94845 0.89479 0.94841 0.92826 0.90620 0.89071 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.00 36.00 0.36 -0.39 16 2 C 0.01 0.17 7.44 -35.19 -0.26 -0.09 16 3 O -0.20 -2.14 10.75 5.65 0.06 -2.08 16 4 C 0.17 1.60 13.20 52.02 0.69 2.28 16 5 N -0.48 -6.25 9.74 -11.45 -0.11 -6.37 16 6 C 0.06 0.85 6.96 -83.01 -0.58 0.27 16 7 C 0.23 4.19 7.89 -153.80 -1.21 2.97 16 8 N -0.27 -5.44 10.36 32.59 0.34 -5.10 16 9 N -0.31 -6.78 9.69 30.34 0.29 -6.49 16 10 C 0.39 8.28 6.21 -318.68 -1.98 6.30 16 11 N -0.47 -10.41 4.74 -176.04 -0.84 -11.24 16 12 C 0.04 0.89 8.66 60.06 0.52 1.41 16 13 C 0.22 5.69 2.32 -68.86 -0.16 5.53 16 14 H 0.04 1.03 8.11 -51.93 -0.42 0.61 16 15 C -0.17 -4.39 8.20 37.16 0.30 -4.09 16 16 C -0.51 -13.45 7.81 -34.44 -0.27 -13.72 16 17 H 0.07 1.74 6.81 -52.48 -0.36 1.38 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 N -0.46 -8.64 3.24 -122.02 -0.39 -9.03 16 25 C 0.09 1.34 10.73 59.84 0.64 1.98 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.11 1.40 6.63 -51.93 -0.34 1.06 16 29 H 0.25 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.04 0.86 6.54 -51.93 -0.34 0.52 16 31 H 0.09 1.86 6.29 -51.93 -0.33 1.54 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.83 5.94 -51.93 -0.31 0.53 16 34 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 35 H 0.03 0.81 6.60 -51.93 -0.34 0.47 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.23 6.96 -51.93 -0.36 0.87 16 39 H 0.10 1.43 8.11 -51.93 -0.42 1.01 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -32.23 322.39 -7.01 -39.24 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.79 Total: 0.86 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.04 Total: 4.04 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.08 Total: -62.68 kcal Atomic # 8 Polarization: -2.14 SS G_CDS: 0.06 Total: -2.08 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.23 -7.01 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262927118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.686 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds