Wall clock time and date at job start Tue Mar 31 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34655 * 126.52523 * 2 1 4 4 C 1.33959 * 108.12865 * 180.24166 * 3 2 1 5 5 N 1.30084 * 109.17962 * 359.75479 * 4 3 2 6 6 C 1.35786 * 126.52628 * 179.82378 * 2 1 3 7 7 C 1.47872 * 126.40181 * 0.03158 * 6 2 1 8 8 N 1.31258 * 126.48002 * 359.67776 * 7 6 2 9 9 N 1.28508 * 109.95660 * 180.02562 * 8 7 6 10 10 C 1.31256 * 110.10506 * 0.02562 * 9 8 7 11 11 N 1.38532 * 126.37161 * 180.02562 * 10 9 8 12 12 C 1.46894 * 111.00172 * 306.58192 * 11 10 9 13 13 C 1.46901 * 110.99850 * 70.53905 * 11 10 9 14 14 H 1.09000 * 109.47565 * 54.99238 * 13 11 10 15 15 C 1.53007 * 109.47085 * 294.99410 * 13 11 10 16 16 C 1.50694 * 109.47305 * 174.99724 * 13 11 10 17 17 H 1.08005 * 119.99964 * 359.97438 * 16 13 11 18 18 C 1.37880 * 120.00187 * 179.97438 * 16 13 11 19 19 N 1.31507 * 119.99955 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99902 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47151 * 119.99841 * 20 18 16 23 23 H 1.48500 * 109.46865 * 239.99576 * 20 18 16 24 24 N 1.36611 * 107.24855 * 359.97438 * 10 9 8 25 25 C 1.46496 * 127.17343 * 179.74334 * 24 10 9 26 26 H 1.08999 * 109.47544 * 270.16787 * 1 2 3 27 27 H 1.08994 * 109.47182 * 30.17585 * 1 2 3 28 28 H 1.09004 * 109.46994 * 150.17547 * 1 2 3 29 29 H 1.07998 * 125.40934 * 179.75600 * 4 3 2 30 30 H 1.08999 * 109.47406 * 54.55360 * 12 11 10 31 31 H 1.09003 * 109.47027 * 174.55462 * 12 11 10 32 32 H 1.09002 * 109.46986 * 294.55402 * 12 11 10 33 33 H 1.09005 * 109.46509 * 59.99862 * 15 13 11 34 34 H 1.08998 * 109.47306 * 180.02562 * 15 13 11 35 35 H 1.08994 * 109.47094 * 300.00634 * 15 13 11 36 36 H 0.97006 * 119.99898 * 180.02562 * 19 18 16 37 37 H 1.08995 * 109.47239 * 95.32351 * 25 24 10 38 38 H 1.08998 * 109.47062 * 215.32746 * 25 24 10 39 39 H 1.08999 * 109.46888 * 335.32585 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3084 1.0821 0.0000 4 6 3.5795 0.6593 -0.0054 5 7 3.5973 -0.6414 -0.0034 6 6 2.3151 -1.0911 0.0034 7 6 1.8810 -2.5047 0.0070 8 7 0.6431 -2.9409 0.0136 9 7 0.6307 -4.2259 0.0156 10 6 1.8589 -4.6888 0.0110 11 7 2.2342 -6.0224 0.0109 12 6 1.5947 -6.7493 1.1156 13 6 1.9316 -6.6543 -1.2802 14 1 2.4018 -6.0854 -2.0823 15 6 0.4166 -6.6793 -1.4931 16 6 2.4630 -8.0644 -1.2862 17 1 2.9748 -8.4523 -0.4178 18 6 2.2958 -8.8595 -2.4002 19 7 1.6722 -8.3874 -3.4574 20 14 2.9539 -10.6077 -2.4072 21 1 3.6096 -10.8950 -1.1061 22 1 1.8323 -11.5581 -2.6174 23 1 3.9435 -10.7597 -3.5040 24 7 2.6982 -3.6109 0.0052 25 6 4.1630 -3.6295 0.0038 26 1 -0.3634 0.0030 1.0276 27 1 -0.3633 0.8883 -0.5165 28 1 -0.3633 -0.8916 -0.5111 29 1 4.4511 1.2971 -0.0105 30 1 0.5148 -6.6105 1.0650 31 1 1.8288 -7.8109 1.0356 32 1 1.9661 -6.3660 2.0660 33 1 0.0323 -5.6593 -1.4888 34 1 0.1920 -7.1486 -2.4509 35 1 -0.0536 -7.2481 -0.6911 36 1 1.5543 -8.9469 -4.2410 37 1 4.5265 -3.5436 -1.0201 38 1 4.5375 -2.7930 0.5938 39 1 4.5148 -4.5659 0.4369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262927118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:06 Heat of formation + Delta-G solvation = 104.214395 kcal Electronic energy + Delta-G solvation = -23577.384519 eV Core-core repulsion = 20137.500041 eV Total energy + Delta-G solvation = -3439.884478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.45103 -43.83369 -39.05031 -36.35359 -35.64330 -34.82363 -33.80098 -31.27034 -30.31567 -28.66762 -27.93617 -27.26336 -26.94690 -24.56769 -23.55667 -22.86479 -21.61143 -21.04423 -18.75899 -18.42905 -17.94441 -17.59779 -17.44933 -16.92112 -16.48524 -15.96239 -15.65733 -15.41199 -14.91029 -14.50106 -14.34340 -14.23473 -13.90178 -13.74024 -13.45961 -13.26253 -13.12532 -12.94640 -12.74822 -12.72398 -12.57364 -12.40967 -12.11534 -12.02699 -11.86674 -11.56257 -11.20963 -10.93539 -10.63929 -10.54052 -9.61307 -9.31387 -8.14680 -6.28434 -0.05415 0.77532 1.18996 1.37429 1.45179 1.47035 1.59099 1.67044 2.03937 2.42018 2.68088 3.05567 3.16268 3.49001 3.61811 3.87164 4.10654 4.19976 4.29651 4.39738 4.41268 4.60141 4.63495 4.65342 4.68974 4.72032 4.91723 4.96208 5.00426 5.06859 5.08954 5.16327 5.23662 5.38336 5.59379 5.61415 5.77095 5.96431 6.19054 6.50821 6.57025 6.81276 7.40772 7.56659 8.92582 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030059 B = 0.003908 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.292926 B = 7163.674005 C = 7425.319884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.029 3.971 3 O -0.196 6.196 4 C 0.206 3.794 5 N -0.509 5.509 6 C 0.012 3.988 7 C 0.244 3.756 8 N -0.293 5.293 9 N -0.332 5.332 10 C 0.362 3.638 11 N -0.467 5.467 12 C 0.049 3.951 13 C 0.234 3.766 14 H -0.004 1.004 15 C -0.154 4.154 16 C -0.517 4.517 17 H 0.073 0.927 18 C 0.014 3.986 19 N -0.921 5.921 20 Si 0.969 3.031 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.283 1.283 24 N -0.460 5.460 25 C 0.089 3.911 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.309 0.691 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.338 18.201 8.445 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.029 4.029 3 O -0.082 6.082 4 C -0.022 4.022 5 N -0.237 5.237 6 C -0.106 4.106 7 C -0.021 4.021 8 N -0.137 5.137 9 N -0.177 5.177 10 C 0.005 3.995 11 N -0.193 5.193 12 C -0.098 4.098 13 C 0.129 3.871 14 H 0.014 0.986 15 C -0.214 4.214 16 C -0.555 4.555 17 H 0.091 0.909 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.794 3.206 21 H -0.184 1.184 22 H -0.208 1.208 23 H -0.209 1.209 24 N -0.152 5.152 25 C -0.052 4.052 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.108 0.892 29 H 0.324 0.676 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.902 17.739 8.353 19.992 hybrid contribution 0.411 -0.733 -0.672 1.077 sum 4.314 17.006 7.681 19.152 Atomic orbital electron populations 1.20567 0.81420 1.05536 1.05358 1.23751 0.95847 0.82659 1.00678 1.84488 1.18821 1.35054 1.69878 1.29167 0.86154 0.90172 0.96661 1.70567 1.20786 1.12295 1.20066 1.18093 0.90185 0.88350 1.13933 1.21453 0.87094 0.86870 1.06721 1.74121 1.16391 1.03625 1.19520 1.74598 1.18613 1.02774 1.21742 1.22804 0.85161 0.89833 1.01682 1.59269 1.57742 0.94473 1.07836 1.22269 0.96880 0.99632 0.91015 1.19089 0.92029 0.93537 0.82468 0.98611 1.22225 0.98586 0.98606 1.01957 1.21289 1.36662 0.96386 1.01193 0.90895 1.25764 0.95219 1.02732 0.94850 1.70062 1.42786 1.38178 1.05044 0.85328 0.77871 0.78907 0.78445 1.18379 1.20772 1.20875 1.46402 1.10216 1.04969 1.53588 1.22178 0.72930 1.05743 1.04389 0.87978 0.87537 0.89213 0.67637 0.94977 0.89215 0.91146 0.95212 0.91983 0.94495 0.92801 0.90583 0.87045 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.00 71.23 0.71 -0.68 16 2 C 0.03 0.66 7.44 25.12 0.19 0.85 16 3 O -0.20 -3.46 10.75 -2.68 -0.03 -3.49 16 4 C 0.21 2.94 13.20 130.50 1.72 4.67 16 5 N -0.51 -12.16 9.74 -305.03 -2.97 -15.13 16 6 C 0.01 0.36 6.96 40.50 0.28 0.64 16 7 C 0.24 9.01 7.89 136.24 1.07 10.09 16 8 N -0.29 -11.95 10.36 -50.81 -0.53 -12.48 16 9 N -0.33 -15.11 9.69 -57.92 -0.56 -15.67 16 10 C 0.36 15.87 6.21 260.04 1.61 17.48 16 11 N -0.47 -21.06 4.74 -710.87 -3.37 -24.44 16 12 C 0.05 1.97 8.66 127.69 1.11 3.07 16 13 C 0.23 12.33 2.32 44.17 0.10 12.43 16 14 H 0.00 -0.24 8.11 -2.39 -0.02 -0.26 16 15 C -0.15 -8.16 8.20 71.98 0.59 -7.57 16 16 C -0.52 -27.73 7.81 25.60 0.20 -27.53 16 17 H 0.07 3.76 6.81 -2.91 -0.02 3.74 16 18 C 0.01 0.73 5.30 84.66 0.45 1.18 16 19 N -0.92 -53.23 11.32 21.45 0.24 -52.99 16 20 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 N -0.46 -17.60 3.24 -539.97 -1.75 -19.34 16 25 C 0.09 2.69 10.73 127.77 1.37 4.07 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.09 2.22 6.63 -2.38 -0.02 2.21 16 29 H 0.31 0.29 8.06 -2.91 -0.02 0.27 16 30 H 0.03 1.33 6.54 -2.39 -0.02 1.31 16 31 H 0.09 3.60 6.29 -2.39 -0.02 3.58 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.03 1.55 5.94 -2.38 -0.01 1.54 16 34 H 0.06 3.58 6.07 -2.39 -0.01 3.56 16 35 H 0.04 1.86 6.60 -2.39 -0.02 1.84 16 36 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.11 2.88 6.96 -2.39 -0.02 2.86 16 39 H 0.10 2.89 8.11 -2.39 -0.02 2.87 16 Total: -1.00 -72.13 322.39 3.55 -68.58 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.08 Total: 11.63 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 9.41 Total: 18.70 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -8.94 Total: -140.06 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.03 Total: -3.49 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -72.13 3.55 -68.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262927118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.793 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds