Wall clock time and date at job start Tue Mar 31 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34652 * 126.52791 * 2 1 4 4 C 1.33961 * 108.12585 * 180.24425 * 3 2 1 5 5 N 1.30078 * 109.17622 * 359.75641 * 4 3 2 6 6 C 1.35783 * 126.52141 * 179.82925 * 2 1 3 7 7 C 1.47873 * 126.40354 * 0.02562 * 6 2 1 8 8 N 1.31259 * 126.47609 * 359.73041 * 7 6 2 9 9 N 1.28514 * 109.95723 * 179.97438 * 8 7 6 10 10 C 1.31256 * 110.10112 * 0.02562 * 9 8 7 11 11 N 1.38533 * 126.37317 * 179.97438 * 10 9 8 12 12 C 1.46898 * 111.00024 * 236.07227 * 11 10 9 13 13 C 1.46900 * 111.00237 * 0.02562 * 11 10 9 14 14 H 1.08996 * 109.46995 * 300.00273 * 13 11 10 15 15 C 1.53005 * 109.47197 * 59.99687 * 13 11 10 16 16 C 1.50697 * 109.47714 * 179.97438 * 13 11 10 17 17 H 1.08004 * 119.99478 * 0.02562 * 16 13 11 18 18 C 1.37873 * 120.00276 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00298 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99818 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47313 * 60.00091 * 20 18 16 22 22 H 1.48502 * 109.47121 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47078 * 299.99925 * 20 18 16 24 24 N 1.36610 * 107.25083 * 359.97438 * 10 9 8 25 25 C 1.46497 * 127.17300 * 179.97438 * 24 10 9 26 26 H 1.09002 * 109.46940 * 270.17497 * 1 2 3 27 27 H 1.08998 * 109.46993 * 30.16667 * 1 2 3 28 28 H 1.08991 * 109.47111 * 150.17230 * 1 2 3 29 29 H 1.08005 * 125.40657 * 179.73145 * 4 3 2 30 30 H 1.08999 * 109.47313 * 60.00157 * 12 11 10 31 31 H 1.09006 * 109.46714 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.46976 * 299.99870 * 12 11 10 33 33 H 1.08991 * 109.47637 * 180.02562 * 15 13 11 34 34 H 1.09003 * 109.47098 * 300.00647 * 15 13 11 35 35 H 1.09002 * 109.47112 * 59.99862 * 15 13 11 36 36 H 0.96996 * 120.00014 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.47556 * 269.97367 * 25 24 10 38 38 H 1.08995 * 109.47854 * 29.98156 * 25 24 10 39 39 H 1.09009 * 109.47013 * 149.98204 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3085 1.0820 0.0000 4 6 3.5796 0.6591 -0.0054 5 7 3.5972 -0.6415 -0.0036 6 6 2.3151 -1.0912 0.0033 7 6 1.8809 -2.5047 0.0069 8 7 0.6429 -2.9407 0.0126 9 7 0.6304 -4.2258 0.0139 10 6 1.8586 -4.6889 0.0096 11 7 2.2338 -6.0224 0.0098 12 6 3.1178 -6.3203 1.1446 13 6 1.0563 -6.9007 0.0151 14 1 0.4610 -6.7049 0.9069 15 6 0.2117 -6.6289 -1.2315 16 6 1.5029 -8.3400 0.0146 17 1 2.5563 -8.5784 0.0112 18 6 0.5669 -9.3523 0.0196 19 7 -0.7158 -9.0619 0.0243 20 14 1.1207 -11.1363 0.0197 21 1 1.9408 -11.4000 1.2293 22 1 -0.0696 -12.0242 0.0249 23 1 1.9313 -11.4031 -1.1956 24 7 2.6979 -3.6110 0.0048 25 6 4.1627 -3.6298 -0.0005 26 1 -0.3633 0.0031 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3633 -0.8914 -0.5111 29 1 4.4513 1.2969 -0.0109 30 1 2.5972 -6.1036 2.0774 31 1 3.3975 -7.3736 1.1205 32 1 4.0149 -5.7049 1.0777 33 1 -0.6622 -7.2802 -1.2274 34 1 -0.1114 -5.5879 -1.2316 35 1 0.8070 -6.8246 -2.1234 36 1 -1.3742 -9.7742 0.0274 37 1 4.5299 -3.6324 1.0258 38 1 4.5129 -4.5253 -0.5139 39 1 4.5356 -2.7455 -0.5175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262927119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:09 Heat of formation + Delta-G solvation = 130.742451 kcal Electronic energy + Delta-G solvation = -23556.389493 eV Core-core repulsion = 20117.655358 eV Total energy + Delta-G solvation = -3438.734135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.49174 -42.35179 -37.19862 -35.27292 -34.42618 -32.97255 -32.64460 -29.46978 -29.24013 -27.66271 -26.89615 -25.45458 -24.31562 -23.24859 -22.48398 -21.42172 -20.44607 -19.41803 -17.64575 -16.96931 -16.67141 -16.09252 -15.85462 -15.36943 -14.87248 -14.77802 -14.40275 -13.92749 -13.54286 -13.31530 -13.15410 -12.99094 -12.81843 -12.50682 -12.26694 -11.90356 -11.68195 -11.21654 -11.01067 -10.97222 -10.81729 -10.51516 -10.46400 -10.22492 -10.05261 -9.89888 -9.75815 -9.55327 -8.98249 -8.54271 -8.37265 -7.29996 -6.04640 -4.12900 1.07217 1.85335 2.44997 2.67392 2.78072 3.29393 3.34768 3.36222 3.47712 3.68777 4.31437 4.50184 4.59227 4.61676 4.98417 5.10157 5.26881 5.31362 5.35789 5.47082 5.52493 5.59932 5.71447 5.79818 5.95290 5.97973 6.01675 6.21970 6.33199 6.45260 6.80276 7.00807 7.17756 7.36396 7.40498 7.44674 7.67962 7.73017 7.97077 8.28144 8.42639 8.87615 9.24970 9.51606 11.01381 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035934 B = 0.003838 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.028411 B = 7293.850967 C = 7913.106300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.011 3.989 3 O -0.202 6.202 4 C 0.173 3.827 5 N -0.479 5.479 6 C 0.060 3.940 7 C 0.217 3.783 8 N -0.265 5.265 9 N -0.309 5.309 10 C 0.396 3.604 11 N -0.452 5.452 12 C 0.032 3.968 13 C 0.230 3.770 14 H 0.022 0.978 15 C -0.144 4.144 16 C -0.520 4.520 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.882 5.882 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 N -0.479 5.479 25 C 0.083 3.917 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.253 0.747 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.023 0.977 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.777 17.975 0.966 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.046 4.046 3 O -0.088 6.088 4 C -0.054 4.054 5 N -0.209 5.209 6 C -0.060 4.060 7 C -0.048 4.048 8 N -0.107 5.107 9 N -0.155 5.155 10 C 0.041 3.959 11 N -0.176 5.176 12 C -0.115 4.115 13 C 0.126 3.874 14 H 0.040 0.960 15 C -0.202 4.202 16 C -0.559 4.559 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.520 5.520 20 Si 0.728 3.272 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 N -0.175 5.175 25 C -0.060 4.060 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.268 0.732 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.920 17.364 0.552 19.093 hybrid contribution 1.167 -0.509 0.530 1.379 sum 9.088 16.856 1.082 19.180 Atomic orbital electron populations 1.20512 0.82529 1.05283 1.04526 1.23486 0.95065 0.82806 1.03230 1.84425 1.18284 1.36102 1.70036 1.27864 0.85648 0.90831 1.01102 1.70574 1.21813 1.10292 1.18176 1.18111 0.88305 0.89566 1.09989 1.20734 0.87496 0.85274 1.11274 1.74192 1.15290 1.04603 1.16659 1.74837 1.15687 1.00772 1.24194 1.23266 0.85659 0.88314 0.98658 1.59058 1.22711 0.95524 1.40281 1.22460 0.94801 1.04127 0.90151 1.19402 0.82936 0.88869 0.96196 0.95987 1.21983 1.01221 1.00564 0.96432 1.21020 0.93268 0.89252 1.52315 0.91769 1.24888 0.94802 0.99185 0.94885 1.69914 1.00053 1.32707 1.49315 0.86531 0.78013 0.84081 0.78590 1.20262 1.21201 1.20175 1.46001 1.08507 1.05302 1.57734 1.22097 0.75474 1.05096 1.03340 0.89269 0.90466 0.86820 0.73160 0.95121 0.88181 0.92984 0.89424 0.93604 0.95766 0.92645 0.91018 0.89203 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.00 36.01 0.36 -0.40 16 2 C 0.01 0.14 7.44 -35.18 -0.26 -0.13 16 3 O -0.20 -2.13 10.75 5.66 0.06 -2.06 16 4 C 0.17 1.54 13.20 52.02 0.69 2.23 16 5 N -0.48 -6.09 9.60 -11.45 -0.11 -6.20 16 6 C 0.06 0.89 6.96 -83.02 -0.58 0.32 16 7 C 0.22 3.95 7.89 -153.80 -1.21 2.74 16 8 N -0.26 -5.40 10.36 32.59 0.34 -5.06 16 9 N -0.31 -7.13 8.97 30.34 0.27 -6.86 16 10 C 0.40 8.53 6.76 -318.68 -2.15 6.38 16 11 N -0.45 -10.03 4.69 -176.04 -0.82 -10.86 16 12 C 0.03 0.60 9.08 60.06 0.55 1.14 16 13 C 0.23 5.95 1.73 -68.86 -0.12 5.83 16 14 H 0.02 0.65 8.11 -51.93 -0.42 0.22 16 15 C -0.14 -3.77 8.77 37.16 0.33 -3.45 16 16 C -0.52 -13.93 7.88 -34.44 -0.27 -14.20 16 17 H 0.06 1.65 6.41 -52.48 -0.34 1.32 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -25.12 11.32 55.43 0.63 -24.49 16 20 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 N -0.48 -8.72 3.23 -122.02 -0.39 -9.12 16 25 C 0.08 1.14 9.13 59.85 0.55 1.69 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.11 1.44 6.63 -51.93 -0.34 1.09 16 29 H 0.25 0.79 8.06 -52.48 -0.42 0.36 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.90 6.10 -51.93 -0.32 1.59 16 32 H 0.05 0.79 5.40 -51.93 -0.28 0.51 16 33 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 34 H 0.05 1.18 5.42 -51.93 -0.28 0.89 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 38 H 0.09 1.19 7.57 -51.93 -0.39 0.79 16 39 H 0.10 1.25 6.66 -51.92 -0.35 0.90 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -32.97 319.06 -7.16 -40.13 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.69 Total: 0.07 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.23 Total: 3.82 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.09 Total: -62.58 kcal Atomic # 8 Polarization: -2.13 SS G_CDS: 0.06 Total: -2.06 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.97 -7.16 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262927119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.874 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds