Wall clock time and date at job start Tue Mar 31 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34652 * 126.52791 * 2 1 4 4 C 1.33961 * 108.12585 * 180.24425 * 3 2 1 5 5 N 1.30078 * 109.17622 * 359.75641 * 4 3 2 6 6 C 1.35783 * 126.52141 * 179.82925 * 2 1 3 7 7 C 1.47873 * 126.40354 * 0.02562 * 6 2 1 8 8 N 1.31259 * 126.47609 * 359.73041 * 7 6 2 9 9 N 1.28514 * 109.95723 * 179.97438 * 8 7 6 10 10 C 1.31256 * 110.10112 * 0.02562 * 9 8 7 11 11 N 1.38533 * 126.37317 * 179.97438 * 10 9 8 12 12 C 1.46898 * 111.00024 * 236.07227 * 11 10 9 13 13 C 1.46900 * 111.00237 * 0.02562 * 11 10 9 14 14 H 1.08996 * 109.46995 * 300.00273 * 13 11 10 15 15 C 1.53005 * 109.47197 * 59.99687 * 13 11 10 16 16 C 1.50697 * 109.47714 * 179.97438 * 13 11 10 17 17 H 1.08004 * 119.99478 * 0.02562 * 16 13 11 18 18 C 1.37873 * 120.00276 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00298 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99818 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47313 * 60.00091 * 20 18 16 22 22 H 1.48502 * 109.47121 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47078 * 299.99925 * 20 18 16 24 24 N 1.36610 * 107.25083 * 359.97438 * 10 9 8 25 25 C 1.46497 * 127.17300 * 179.97438 * 24 10 9 26 26 H 1.09002 * 109.46940 * 270.17497 * 1 2 3 27 27 H 1.08998 * 109.46993 * 30.16667 * 1 2 3 28 28 H 1.08991 * 109.47111 * 150.17230 * 1 2 3 29 29 H 1.08005 * 125.40657 * 179.73145 * 4 3 2 30 30 H 1.08999 * 109.47313 * 60.00157 * 12 11 10 31 31 H 1.09006 * 109.46714 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.46976 * 299.99870 * 12 11 10 33 33 H 1.08991 * 109.47637 * 180.02562 * 15 13 11 34 34 H 1.09003 * 109.47098 * 300.00647 * 15 13 11 35 35 H 1.09002 * 109.47112 * 59.99862 * 15 13 11 36 36 H 0.96996 * 120.00014 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.47556 * 269.97367 * 25 24 10 38 38 H 1.08995 * 109.47854 * 29.98156 * 25 24 10 39 39 H 1.09009 * 109.47013 * 149.98204 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3085 1.0820 0.0000 4 6 3.5796 0.6591 -0.0054 5 7 3.5972 -0.6415 -0.0036 6 6 2.3151 -1.0912 0.0033 7 6 1.8809 -2.5047 0.0069 8 7 0.6429 -2.9407 0.0126 9 7 0.6304 -4.2258 0.0139 10 6 1.8586 -4.6889 0.0096 11 7 2.2338 -6.0224 0.0098 12 6 3.1178 -6.3203 1.1446 13 6 1.0563 -6.9007 0.0151 14 1 0.4610 -6.7049 0.9069 15 6 0.2117 -6.6289 -1.2315 16 6 1.5029 -8.3400 0.0146 17 1 2.5563 -8.5784 0.0112 18 6 0.5669 -9.3523 0.0196 19 7 -0.7158 -9.0619 0.0243 20 14 1.1207 -11.1363 0.0197 21 1 1.9408 -11.4000 1.2293 22 1 -0.0696 -12.0242 0.0249 23 1 1.9313 -11.4031 -1.1956 24 7 2.6979 -3.6110 0.0048 25 6 4.1627 -3.6298 -0.0005 26 1 -0.3633 0.0031 1.0277 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3633 -0.8914 -0.5111 29 1 4.4513 1.2969 -0.0109 30 1 2.5972 -6.1036 2.0774 31 1 3.3975 -7.3736 1.1205 32 1 4.0149 -5.7049 1.0777 33 1 -0.6622 -7.2802 -1.2274 34 1 -0.1114 -5.5879 -1.2316 35 1 0.8070 -6.8246 -2.1234 36 1 -1.3742 -9.7742 0.0274 37 1 4.5299 -3.6324 1.0258 38 1 4.5129 -4.5253 -0.5139 39 1 4.5356 -2.7455 -0.5175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262927119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:09 Heat of formation + Delta-G solvation = 108.713325 kcal Electronic energy + Delta-G solvation = -23557.344747 eV Core-core repulsion = 20117.655358 eV Total energy + Delta-G solvation = -3439.689389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.42934 -43.81328 -38.95309 -36.40295 -35.74311 -34.72865 -33.78049 -31.24081 -30.85961 -28.92357 -27.95081 -27.29439 -26.04534 -24.42363 -23.82910 -22.84554 -21.68082 -21.02138 -18.71014 -18.53769 -17.92363 -17.53433 -17.36422 -16.99599 -16.40313 -15.94293 -15.66916 -15.55138 -14.95295 -14.59000 -14.43146 -14.26165 -13.93150 -13.89634 -13.60971 -13.34970 -12.94504 -12.83939 -12.75862 -12.70105 -12.29844 -12.25529 -12.09437 -12.03623 -11.73343 -11.55756 -11.22790 -11.07799 -10.73805 -10.52822 -9.86228 -8.91022 -8.12029 -6.28065 -0.00252 0.82720 1.18380 1.44342 1.46271 1.48802 1.56244 1.68922 2.09630 2.41869 2.70247 2.99130 3.18707 3.52359 3.63482 3.78381 4.05075 4.19432 4.26861 4.33677 4.42638 4.44004 4.54608 4.64602 4.68339 4.83279 4.86714 4.91370 4.93294 5.13073 5.15694 5.23877 5.31939 5.40809 5.48864 5.65154 5.88476 5.96232 6.16164 6.50120 6.54767 6.80595 7.40600 7.70554 8.94471 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035934 B = 0.003838 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.028411 B = 7293.850967 C = 7913.106300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.023 3.977 3 O -0.197 6.197 4 C 0.206 3.794 5 N -0.506 5.506 6 C 0.019 3.981 7 C 0.237 3.763 8 N -0.292 5.292 9 N -0.352 5.352 10 C 0.376 3.624 11 N -0.454 5.454 12 C 0.033 3.967 13 C 0.241 3.759 14 H -0.021 1.021 15 C -0.128 4.128 16 C -0.531 4.531 17 H 0.075 0.925 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.269 1.269 24 N -0.476 5.476 25 C 0.078 3.922 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.309 0.691 30 H 0.018 0.982 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.019 0.981 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.528 19.794 1.047 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.035 4.035 3 O -0.083 6.083 4 C -0.022 4.022 5 N -0.235 5.235 6 C -0.099 4.099 7 C -0.030 4.030 8 N -0.134 5.134 9 N -0.198 5.198 10 C 0.019 3.981 11 N -0.178 5.178 12 C -0.113 4.113 13 C 0.136 3.864 14 H -0.003 1.003 15 C -0.187 4.187 16 C -0.570 4.570 17 H 0.093 0.907 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.194 1.194 24 N -0.171 5.171 25 C -0.063 4.063 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.108 0.892 29 H 0.324 0.676 30 H 0.037 0.963 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.703 19.193 0.638 21.985 hybrid contribution 0.395 -0.774 0.523 1.014 sum 11.097 18.419 1.161 21.535 Atomic orbital electron populations 1.20543 0.81722 1.05510 1.05136 1.23694 0.95753 0.82775 1.01238 1.84484 1.18855 1.35067 1.69934 1.29174 0.86133 0.90239 0.96657 1.70527 1.20611 1.12183 1.20182 1.18056 0.90139 0.88283 1.13442 1.21356 0.86913 0.86785 1.07898 1.74118 1.16795 1.03523 1.18954 1.74678 1.17375 1.02341 1.25371 1.23121 0.86162 0.88618 1.00166 1.58988 1.21309 0.95611 1.41856 1.22546 0.95396 1.04756 0.88631 1.19006 0.83862 0.89725 0.93794 1.00298 1.21785 1.00321 0.99924 0.96658 1.21334 0.93838 0.89742 1.52050 0.90736 1.25791 0.94732 1.03709 0.94338 1.70074 1.01287 1.33997 1.50203 0.85425 0.77573 0.78418 0.79084 1.18988 1.21253 1.19443 1.46196 1.09902 1.04158 1.56850 1.22392 0.72861 1.06093 1.04935 0.88424 0.87535 0.89229 0.67623 0.96290 0.88471 0.89087 0.91848 0.93610 0.96155 0.92719 0.89031 0.88533 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 10.00 71.24 0.71 -0.75 16 2 C 0.02 0.54 7.44 25.12 0.19 0.73 16 3 O -0.20 -3.40 10.75 -2.67 -0.03 -3.43 16 4 C 0.21 2.73 13.20 130.50 1.72 4.45 16 5 N -0.51 -11.33 9.60 -305.03 -2.93 -14.26 16 6 C 0.02 0.53 6.96 40.50 0.28 0.81 16 7 C 0.24 8.64 7.89 136.24 1.07 9.71 16 8 N -0.29 -12.38 10.36 -50.81 -0.53 -12.90 16 9 N -0.35 -17.05 8.97 -57.92 -0.52 -17.57 16 10 C 0.38 16.60 6.76 260.04 1.76 18.36 16 11 N -0.45 -20.55 4.69 -710.86 -3.33 -23.88 16 12 C 0.03 1.24 9.08 127.69 1.16 2.40 16 13 C 0.24 13.04 1.73 44.17 0.08 13.12 16 14 H -0.02 -1.27 8.11 -2.39 -0.02 -1.29 16 15 C -0.13 -7.09 8.77 71.98 0.63 -6.46 16 16 C -0.53 -28.96 7.88 25.60 0.20 -28.76 16 17 H 0.07 3.82 6.41 -2.91 -0.02 3.80 16 18 C 0.01 0.77 5.30 84.65 0.45 1.22 16 19 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 20 Si 0.97 42.91 29.54 68.60 2.03 44.93 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 N -0.48 -17.16 3.23 -539.95 -1.75 -18.90 16 25 C 0.08 1.99 9.13 127.77 1.17 3.16 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.09 2.31 6.63 -2.39 -0.02 2.30 16 29 H 0.31 -0.06 8.06 -2.91 -0.02 -0.08 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 3.65 6.10 -2.38 -0.01 3.63 16 32 H 0.09 2.61 5.40 -2.39 -0.01 2.60 16 33 H 0.06 3.77 6.07 -2.39 -0.01 3.76 16 34 H 0.05 2.49 5.42 -2.39 -0.01 2.48 16 35 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.09 1.98 7.85 -2.39 -0.02 1.96 16 38 H 0.10 2.34 7.57 -2.39 -0.02 2.32 16 39 H 0.11 2.57 6.66 -2.38 -0.02 2.55 16 Total: -1.00 -75.66 319.06 3.70 -71.96 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.09 Total: 9.80 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 9.42 Total: 17.99 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -8.81 Total: -141.25 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.03 Total: -3.43 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -75.66 3.70 -71.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262927119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.675 kcal (2) G-P(sol) polarization free energy of solvation -75.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds