Wall clock time and date at job start Tue Mar 31 2020 09:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48497 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46782 * 299.99501 * 3 2 1 6 6 H 1.48493 * 109.46984 * 59.99457 * 3 2 1 7 7 C 1.37880 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99742 * 170.00193 * 10 9 7 12 12 C 1.53244 * 109.33717 * 187.25979 * 11 10 9 13 13 N 1.47078 * 108.52025 * 306.16597 * 12 11 10 14 14 C 1.34774 * 120.88580 * 231.19079 * 13 12 11 15 15 O 1.21581 * 120.00222 * 184.98784 * 14 13 12 16 16 N 1.34780 * 119.99633 * 4.71390 * 14 13 12 17 17 C 1.46503 * 119.99662 * 175.19700 * 16 14 13 18 18 C 1.53001 * 109.46836 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47402 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.46631 * 64.99529 * 19 18 17 21 21 F 1.39892 * 109.47483 * 184.99760 * 19 18 17 22 22 C 1.47081 * 118.23549 * 51.46114 * 13 12 11 23 23 C 1.46897 * 111.00511 * 294.30409 * 10 9 7 24 24 H 0.96999 * 119.99180 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46973 * 59.99931 * 9 7 2 26 26 H 1.08998 * 109.47143 * 300.00526 * 9 7 2 27 27 H 1.08997 * 109.49477 * 67.29646 * 11 10 9 28 28 H 1.08997 * 109.49313 * 307.21133 * 11 10 9 29 29 H 1.09003 * 109.62633 * 186.46131 * 12 11 10 30 30 H 1.08993 * 109.62882 * 65.87882 * 12 11 10 31 31 H 0.96993 * 120.00011 * 355.19747 * 16 14 13 32 32 H 1.08996 * 109.46867 * 299.99425 * 17 16 14 33 33 H 1.08997 * 109.47602 * 60.00251 * 17 16 14 34 34 H 1.09002 * 109.47346 * 299.99738 * 18 17 16 35 35 H 1.08999 * 109.47423 * 59.99800 * 18 17 16 36 36 H 1.09003 * 109.47004 * 305.00320 * 19 18 17 37 37 H 1.09002 * 109.63018 * 68.24833 * 22 13 12 38 38 H 1.09001 * 109.63196 * 188.83157 * 22 13 12 39 39 H 1.08993 * 109.49068 * 292.70728 * 23 10 9 40 40 H 1.09000 * 109.49095 * 52.78808 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6157 0.0015 11 6 1.5212 -4.8934 0.2407 12 6 2.5639 -6.0031 0.4133 13 7 3.4609 -5.9867 -0.7522 14 6 3.7107 -7.1131 -1.4488 15 8 4.5237 -7.1012 -2.3527 16 7 3.0632 -8.2541 -1.1397 17 6 3.2554 -9.4511 -1.9622 18 6 2.4123 -10.5972 -1.3994 19 6 2.6124 -11.8472 -2.2586 20 9 3.9395 -12.2776 -2.1537 21 9 1.7569 -12.8608 -1.8139 22 6 4.0828 -4.7096 -1.1337 23 6 2.9758 -3.6498 -1.2489 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 0.8790 -5.1267 -0.6086 28 1 0.9167 -4.8186 1.1446 29 1 2.0633 -6.9693 0.4765 30 1 3.1401 -5.8259 1.3214 31 1 2.4700 -8.2826 -0.3728 32 1 2.9459 -9.2418 -2.9861 33 1 4.3078 -9.7344 -1.9513 34 1 2.7212 -10.8066 -0.3753 35 1 1.3599 -10.3137 -1.4107 36 1 2.3878 -11.6127 -3.2992 37 1 4.8023 -4.4105 -0.3714 38 1 4.5870 -4.8202 -2.0938 39 1 2.3133 -3.9003 -2.0774 40 1 3.4262 -2.6730 -1.4253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263280162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:24 Heat of formation + Delta-G solvation = -122.658605 kcal Electronic energy + Delta-G solvation = -23278.432038 eV Core-core repulsion = 19378.020423 eV Total energy + Delta-G solvation = -3900.411616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.35323 -47.36090 -40.30583 -37.80036 -35.80684 -34.46207 -32.56536 -32.05275 -30.61319 -28.28005 -26.06649 -25.19283 -23.27375 -22.49403 -22.16473 -20.80615 -19.40201 -18.19126 -17.97969 -17.59080 -16.64848 -16.39772 -15.97936 -15.83202 -14.99476 -14.69568 -14.55208 -14.39775 -14.20207 -13.98735 -13.81251 -13.70405 -13.52663 -13.13665 -12.91368 -12.40863 -12.21160 -12.04258 -11.93961 -11.44161 -11.32658 -11.18720 -10.88042 -10.77272 -10.63387 -10.55240 -10.07174 -9.89509 -9.32615 -9.26874 -8.51743 -8.38985 -7.36804 -6.09149 -4.10884 2.51162 3.21753 3.27785 3.35584 3.38310 3.40255 3.74728 3.94889 3.95935 4.12609 4.36897 4.67994 4.73406 4.78916 5.02670 5.15205 5.25274 5.30452 5.36336 5.42430 5.50749 5.61281 5.78576 5.88130 5.99520 6.14382 6.26678 6.37067 6.51828 6.62292 6.96291 7.18118 7.24384 7.71504 7.90661 7.97586 8.08568 8.44163 8.58354 8.96832 9.54005 11.01758 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.041350 B = 0.002631 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.985349 B =10639.555962 C =11061.550791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.624 5.624 14 C 0.708 3.292 15 O -0.594 6.594 16 N -0.751 5.751 17 C 0.140 3.860 18 C -0.186 4.186 19 C 0.269 3.731 20 F -0.203 7.203 21 F -0.205 7.205 22 C 0.133 3.867 23 C 0.051 3.949 24 H 0.261 0.739 25 H -0.009 1.009 26 H 0.031 0.969 27 H 0.026 0.974 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.397 0.603 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.025 0.975 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -21.215 -1.848 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.006 4.006 13 N -0.361 5.361 14 C 0.410 3.590 15 O -0.473 6.473 16 N -0.410 5.410 17 C 0.015 3.985 18 C -0.225 4.225 19 C 0.214 3.786 20 F -0.185 7.185 21 F -0.186 7.186 22 C 0.010 3.990 23 C -0.079 4.079 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.233 0.767 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.043 0.957 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.689 -21.026 -2.131 21.454 hybrid contribution -0.682 0.690 -0.107 0.976 sum 3.007 -20.336 -2.238 20.679 Atomic orbital electron populations 1.69970 1.06103 1.26770 1.50941 1.25000 0.94875 0.99409 0.95332 0.86433 0.80105 0.83320 0.77529 1.19578 1.21097 1.21004 1.21181 0.93563 0.89829 1.50168 0.91689 1.19729 0.89990 0.87235 0.96160 1.62076 1.27930 1.02440 1.33583 1.22384 0.94713 0.90978 1.00857 1.21781 0.91916 0.98166 0.88690 1.47416 1.49526 1.07915 1.31232 1.15773 0.81027 0.80157 0.82068 1.90899 1.37667 1.84656 1.34051 1.45131 1.51435 1.10317 1.34141 1.20965 1.00232 0.82667 0.94591 1.22875 1.03808 0.93937 1.01842 1.21720 0.72425 0.83928 1.00504 1.93015 1.36650 1.91204 1.97590 1.93001 1.70545 1.63377 1.91708 1.21856 0.95385 0.80411 1.01340 1.22457 0.95182 0.99240 0.90980 0.92924 0.99126 0.95058 0.95543 0.90084 0.91318 0.90519 0.76658 0.91077 0.90590 0.88615 0.87884 0.86723 0.91052 0.89316 0.95722 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.76 8.41 -34.44 -0.29 -14.05 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 9 C 0.19 4.82 4.72 -4.98 -0.02 4.80 16 10 N -0.54 -10.79 4.62 -235.47 -1.09 -11.87 16 11 C 0.04 0.65 5.62 -3.70 -0.02 0.62 16 12 C 0.12 1.49 6.59 -3.60 -0.02 1.46 16 13 N -0.62 -9.18 3.00 -177.91 -0.53 -9.72 16 14 C 0.71 10.50 8.31 -86.92 -0.72 9.78 16 15 O -0.59 -10.91 15.83 5.29 0.08 -10.83 16 16 N -0.75 -7.79 5.47 -65.23 -0.36 -8.15 16 17 C 0.14 1.18 5.60 -4.04 -0.02 1.16 16 18 C -0.19 -1.01 5.55 -26.73 -0.15 -1.16 16 19 C 0.27 1.61 5.29 37.16 0.20 1.81 16 20 F -0.20 -1.74 17.02 2.25 0.04 -1.71 16 21 F -0.20 -1.62 17.34 2.25 0.04 -1.58 16 22 C 0.13 2.15 6.61 -3.36 -0.02 2.12 16 23 C 0.05 0.95 5.47 -3.46 -0.02 0.93 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 26 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 1.23 7.99 -51.93 -0.41 0.82 16 29 H 0.07 0.62 5.64 -51.93 -0.29 0.33 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.40 3.15 5.97 -40.82 -0.24 2.91 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.45 7.09 -51.93 -0.37 1.08 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 1.96 6.67 -51.93 -0.35 1.62 16 LS Contribution 333.00 15.07 5.02 5.02 Total: -1.00 -32.90 333.00 -8.08 -40.98 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.80 Total: -1.81 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.19 Total: 8.89 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -1.24 Total: -55.09 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.08 Total: -3.29 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.90 -8.08 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263280162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.680 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds