Wall clock time and date at job start Tue Mar 31 2020 09:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48497 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46782 * 299.99501 * 3 2 1 6 6 H 1.48493 * 109.46984 * 59.99457 * 3 2 1 7 7 C 1.37880 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99742 * 170.00193 * 10 9 7 12 12 C 1.53244 * 109.33717 * 187.25979 * 11 10 9 13 13 N 1.47078 * 108.52025 * 306.16597 * 12 11 10 14 14 C 1.34774 * 120.88580 * 231.19079 * 13 12 11 15 15 O 1.21581 * 120.00222 * 184.98784 * 14 13 12 16 16 N 1.34780 * 119.99633 * 4.71390 * 14 13 12 17 17 C 1.46503 * 119.99662 * 175.19700 * 16 14 13 18 18 C 1.53001 * 109.46836 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47402 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.46631 * 64.99529 * 19 18 17 21 21 F 1.39892 * 109.47483 * 184.99760 * 19 18 17 22 22 C 1.47081 * 118.23549 * 51.46114 * 13 12 11 23 23 C 1.46897 * 111.00511 * 294.30409 * 10 9 7 24 24 H 0.96999 * 119.99180 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46973 * 59.99931 * 9 7 2 26 26 H 1.08998 * 109.47143 * 300.00526 * 9 7 2 27 27 H 1.08997 * 109.49477 * 67.29646 * 11 10 9 28 28 H 1.08997 * 109.49313 * 307.21133 * 11 10 9 29 29 H 1.09003 * 109.62633 * 186.46131 * 12 11 10 30 30 H 1.08993 * 109.62882 * 65.87882 * 12 11 10 31 31 H 0.96993 * 120.00011 * 355.19747 * 16 14 13 32 32 H 1.08996 * 109.46867 * 299.99425 * 17 16 14 33 33 H 1.08997 * 109.47602 * 60.00251 * 17 16 14 34 34 H 1.09002 * 109.47346 * 299.99738 * 18 17 16 35 35 H 1.08999 * 109.47423 * 59.99800 * 18 17 16 36 36 H 1.09003 * 109.47004 * 305.00320 * 19 18 17 37 37 H 1.09002 * 109.63018 * 68.24833 * 22 13 12 38 38 H 1.09001 * 109.63196 * 188.83157 * 22 13 12 39 39 H 1.08993 * 109.49068 * 292.70728 * 23 10 9 40 40 H 1.09000 * 109.49095 * 52.78808 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6157 0.0015 11 6 1.5212 -4.8934 0.2407 12 6 2.5639 -6.0031 0.4133 13 7 3.4609 -5.9867 -0.7522 14 6 3.7107 -7.1131 -1.4488 15 8 4.5237 -7.1012 -2.3527 16 7 3.0632 -8.2541 -1.1397 17 6 3.2554 -9.4511 -1.9622 18 6 2.4123 -10.5972 -1.3994 19 6 2.6124 -11.8472 -2.2586 20 9 3.9395 -12.2776 -2.1537 21 9 1.7569 -12.8608 -1.8139 22 6 4.0828 -4.7096 -1.1337 23 6 2.9758 -3.6498 -1.2489 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 0.8790 -5.1267 -0.6086 28 1 0.9167 -4.8186 1.1446 29 1 2.0633 -6.9693 0.4765 30 1 3.1401 -5.8259 1.3214 31 1 2.4700 -8.2826 -0.3728 32 1 2.9459 -9.2418 -2.9861 33 1 4.3078 -9.7344 -1.9513 34 1 2.7212 -10.8066 -0.3753 35 1 1.3599 -10.3137 -1.4107 36 1 2.3878 -11.6127 -3.2992 37 1 4.8023 -4.4105 -0.3714 38 1 4.5870 -4.8202 -2.0938 39 1 2.3133 -3.9003 -2.0774 40 1 3.4262 -2.6730 -1.4253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263280162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:23 Heat of formation + Delta-G solvation = -146.116446 kcal Electronic energy + Delta-G solvation = -23279.449247 eV Core-core repulsion = 19378.020423 eV Total energy + Delta-G solvation = -3901.428824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.89343 -47.91942 -41.46638 -39.17431 -36.69898 -35.99160 -34.41392 -32.99469 -31.84386 -29.93646 -27.42207 -26.30177 -24.54168 -23.90940 -23.05940 -22.19503 -20.56703 -19.23463 -18.55121 -18.49163 -18.21561 -17.41954 -16.86223 -16.83269 -16.70102 -16.00384 -15.80647 -15.45715 -15.34707 -15.22674 -15.01780 -14.79097 -14.32996 -14.25837 -14.01210 -13.67694 -13.46061 -13.10958 -12.95110 -12.73673 -12.61659 -12.53054 -12.36211 -12.30519 -12.15037 -11.91200 -11.74330 -11.37566 -11.17071 -10.62124 -10.30622 -9.61182 -9.03338 -8.20901 -6.30274 1.42001 1.43221 1.51867 1.56313 2.06787 2.40842 2.67113 3.09996 3.12194 3.24075 3.42815 3.46685 3.67366 3.95502 4.06101 4.12876 4.22686 4.24880 4.26626 4.44900 4.50721 4.58130 4.72774 4.85481 4.86840 4.93612 4.96019 5.02964 5.17877 5.23420 5.39760 5.43778 5.64582 5.89878 6.04173 6.26331 6.59321 6.85801 6.89678 7.39682 7.47575 8.90381 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.041350 B = 0.002631 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.985349 B =10639.555962 C =11061.550791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.540 5.540 11 C 0.037 3.963 12 C 0.126 3.874 13 N -0.628 5.628 14 C 0.705 3.295 15 O -0.633 6.633 16 N -0.734 5.734 17 C 0.139 3.861 18 C -0.172 4.172 19 C 0.263 3.737 20 F -0.220 7.220 21 F -0.215 7.215 22 C 0.145 3.855 23 C 0.057 3.943 24 H 0.264 0.736 25 H -0.041 1.041 26 H 0.011 0.989 27 H 0.020 0.980 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.411 0.589 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.011 0.989 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -22.333 -1.217 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.264 5.264 11 C -0.092 4.092 12 C 0.004 3.996 13 N -0.365 5.365 14 C 0.406 3.594 15 O -0.515 6.515 16 N -0.393 5.393 17 C 0.014 3.986 18 C -0.211 4.211 19 C 0.209 3.791 20 F -0.202 7.202 21 F -0.197 7.197 22 C 0.021 3.979 23 C -0.072 4.072 24 H 0.073 0.927 25 H -0.024 1.024 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.160 0.840 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.029 0.971 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.034 -22.199 -1.471 22.610 hybrid contribution -0.831 0.966 -0.317 1.313 sum 3.203 -21.233 -1.788 21.547 Atomic orbital electron populations 1.70086 1.07695 1.27812 1.51938 1.25888 0.95708 1.03139 0.94880 0.85360 0.79092 0.78742 0.77596 1.18623 1.20709 1.20447 1.21506 0.93734 0.91009 1.49762 0.91670 1.19370 0.89998 0.88769 0.93587 1.61989 1.27145 1.03175 1.34131 1.22538 0.95789 0.89952 1.00943 1.21872 0.90882 0.98804 0.88080 1.47415 1.49778 1.07442 1.31845 1.15941 0.80978 0.80953 0.81520 1.90875 1.39507 1.85374 1.35720 1.45009 1.50394 1.09450 1.34458 1.21049 1.00138 0.82697 0.94680 1.22760 1.04323 0.92291 1.01678 1.22076 0.71342 0.83523 1.02165 1.92984 1.38051 1.91430 1.97728 1.92980 1.70802 1.63932 1.91970 1.21589 0.94226 0.80468 1.01579 1.22364 0.95439 0.99442 0.89960 0.92724 1.02366 0.97050 0.96131 0.89218 0.86945 0.89535 0.74984 0.91014 0.92030 0.88131 0.85824 0.83951 0.90361 0.89616 0.97102 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 2 C 0.00 0.10 5.46 84.65 0.46 0.57 16 3 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.52 -28.68 8.41 25.60 0.22 -28.46 16 8 H 0.07 3.51 7.13 -2.91 -0.02 3.49 16 9 C 0.21 10.70 4.72 85.56 0.40 11.10 16 10 N -0.54 -21.82 4.62 -898.90 -4.15 -25.97 16 11 C 0.04 1.13 5.62 86.38 0.49 1.62 16 12 C 0.13 2.81 6.59 86.35 0.57 3.38 16 13 N -0.63 -17.35 3.00 -835.04 -2.51 -19.85 16 14 C 0.70 19.60 8.31 179.05 1.49 21.09 16 15 O -0.63 -22.74 15.83 -3.97 -0.06 -22.81 16 16 N -0.73 -13.17 5.47 -478.54 -2.62 -15.79 16 17 C 0.14 2.02 5.60 86.38 0.48 2.50 16 18 C -0.17 -1.36 5.55 30.59 0.17 -1.19 16 19 C 0.26 2.57 5.29 71.98 0.38 2.95 16 20 F -0.22 -3.49 17.02 44.97 0.77 -2.72 16 21 F -0.22 -2.98 17.34 44.97 0.78 -2.20 16 22 C 0.15 4.59 6.61 86.50 0.57 5.16 16 23 C 0.06 2.18 5.47 86.54 0.47 2.65 16 24 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 25 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 26 H 0.01 0.62 7.97 -2.39 -0.02 0.60 16 27 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 2.61 7.99 -2.39 -0.02 2.59 16 29 H 0.11 1.53 5.64 -2.39 -0.01 1.51 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.41 4.88 5.97 -92.71 -0.55 4.33 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.11 7.94 -2.39 -0.02 1.09 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.79 7.09 -2.39 -0.02 2.77 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.08 3.27 6.67 -2.39 -0.02 3.25 16 Total: -1.00 -72.66 333.00 0.72 -71.95 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.50 Total: 5.43 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 5.70 Total: 21.36 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -8.99 Total: -116.54 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 1.54 Total: -4.92 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -72.66 0.72 -71.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263280162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.171 kcal (2) G-P(sol) polarization free energy of solvation -72.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds