Wall clock time and date at job start Tue Mar 31 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46808 * 59.99929 * 4 2 1 6 6 H 1.07996 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99724 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47267 * 60.00069 * 9 7 5 11 11 H 1.48504 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47138 * 300.00053 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46493 * 109.47084 * 299.99612 * 13 2 1 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 13 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 13 18 18 N 1.46497 * 109.47115 * 180.02562 * 17 15 14 19 19 C 1.34695 * 126.73731 * 125.00113 * 18 17 15 20 20 N 1.30526 * 108.35379 * 179.97438 * 19 18 17 21 21 C 1.34189 * 109.79145 * 0.02562 * 20 19 18 22 22 C 1.43197 * 125.67174 * 180.02562 * 21 20 19 23 23 N 9.84150 * 95.11596 * 115.75635 * 2 1 3 24 24 N 1.31722 * 108.65444 * 359.75428 * 21 20 19 25 25 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 26 26 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 27 27 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 30 30 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 31 31 H 1.08993 * 109.47057 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47095 * 300.00213 * 4 2 1 33 33 H 0.96993 * 120.00031 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 35 35 H 1.09006 * 109.47216 * 60.00328 * 13 2 1 36 36 H 0.97000 * 120.00740 * 359.72857 * 14 13 2 37 37 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 38 38 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 39 39 H 1.08000 * 125.82368 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 1.7440 1.7995 -5.2566 11 1 1.7438 -0.3006 -6.4697 12 1 -0.2360 0.3995 -5.2576 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5712 -1.4796 3.7807 17 6 1.3805 0.2231 4.8999 18 7 1.8687 -0.4675 6.0961 19 6 2.5714 0.0748 7.1092 20 7 2.8182 -0.8607 7.9853 21 6 2.2897 -2.0224 7.5706 22 6 2.3590 -3.2689 8.2720 23 7 2.4076 -4.2595 8.8284 24 7 1.6916 -1.8241 6.4139 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7209 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 2.8615 -1.8822 -4.7336 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 0.9973 0.7603 2.3565 37 1 1.7480 1.2493 4.8980 38 1 0.2905 0.2275 4.9019 39 1 2.8783 1.1076 7.1838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324113584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:07 Heat of formation + Delta-G solvation = 83.149375 kcal Electronic energy + Delta-G solvation = -22122.554209 eV Core-core repulsion = 18681.756284 eV Total energy + Delta-G solvation = -3440.797925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -42.66408 -39.85424 -37.34992 -36.89316 -34.47672 -33.84372 -32.21598 -31.94786 -29.22771 -27.17772 -26.64387 -26.20118 -24.41894 -23.12376 -22.54191 -20.63757 -19.15027 -18.66486 -17.38914 -17.09734 -16.37583 -16.15219 -15.65848 -15.58414 -15.14060 -14.55592 -14.22721 -13.98267 -13.64311 -13.49004 -13.24540 -13.18004 -13.08211 -12.88586 -12.47449 -12.16379 -12.13065 -11.28427 -11.09277 -10.94876 -10.73033 -10.67421 -10.62464 -10.52957 -10.36533 -10.32507 -9.99585 -9.87784 -9.28041 -9.02931 -8.99446 -8.42537 -6.06480 -4.08567 0.74265 1.45487 1.74825 2.16693 2.39070 2.87608 3.12291 3.19079 3.26813 3.33121 3.33528 3.99848 4.10085 4.38425 4.43880 4.50627 4.76474 5.28686 5.31600 5.35152 5.48252 5.58014 5.60419 6.01290 6.05327 6.09086 6.14525 6.24264 6.33127 6.50709 6.58815 6.93246 6.96125 6.97606 7.00300 7.35798 7.40184 7.55306 7.66581 7.91121 8.06332 8.32215 8.95963 9.54988 11.04869 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.037135 B = 0.002600 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.814877 B =10767.612064 C =11188.541825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.129 3.871 14 N -0.715 5.715 15 C 0.492 3.508 16 O -0.515 6.515 17 C 0.106 3.894 18 N -0.354 5.354 19 C 0.273 3.727 20 N -0.510 5.510 21 C 0.289 3.711 22 C 0.313 3.687 23 N -0.366 5.366 24 N -0.222 5.222 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 10.128 18.484 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.007 3.993 14 N -0.368 5.368 15 C 0.274 3.726 16 O -0.390 6.390 17 C -0.020 4.020 18 N -0.146 5.146 19 C -0.023 4.023 20 N -0.237 5.237 21 C 0.007 3.993 22 C -0.007 4.007 23 N -0.045 5.045 24 N -0.054 5.054 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.236 0.764 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.419 7.330 19.082 20.725 hybrid contribution -0.510 1.540 -1.473 2.191 sum -3.929 8.870 17.609 20.104 Atomic orbital electron populations 1.21771 0.95160 1.01285 1.00276 1.20917 0.95536 0.95862 0.94940 1.21769 1.00596 0.95810 1.00290 1.19092 0.96385 0.95274 0.89430 1.21116 1.31449 1.12155 0.90481 0.92294 1.25020 0.95258 0.95064 0.99135 1.69948 1.36723 1.22938 1.23672 0.86699 0.79144 0.79743 0.82642 1.20309 1.21374 1.20310 1.21700 0.99028 0.96167 0.82430 1.46117 1.53267 1.31891 1.05502 1.20277 0.81980 0.85678 0.84655 1.90833 1.36957 1.25044 1.86170 1.21830 1.02671 0.96276 0.81210 1.50087 1.40901 1.06180 1.17463 1.26203 0.92074 1.00638 0.83436 1.70550 1.25298 0.97793 1.30066 1.18114 1.00444 0.89475 0.91279 1.22937 0.94412 0.90274 0.93058 1.81355 1.06608 1.09113 1.07434 1.78675 1.21030 0.93066 1.12647 0.95259 0.91324 0.93289 0.93312 0.91311 0.95270 0.96331 0.96308 0.92896 0.91592 0.91517 0.76432 0.84374 0.85642 0.74984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.05 37.16 0.30 -1.68 16 2 C -0.07 -1.22 0.54 -154.51 -0.08 -1.30 16 3 C -0.13 -1.93 8.05 37.16 0.30 -1.63 16 4 C 0.04 0.83 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.01 7.65 -34.44 -0.26 -13.27 16 6 H 0.06 1.42 5.68 -52.49 -0.30 1.12 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 9 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.13 1.99 4.56 -4.04 -0.02 1.97 16 14 N -0.71 -7.73 4.96 -60.29 -0.30 -8.02 16 15 C 0.49 5.45 7.87 -10.98 -0.09 5.36 16 16 O -0.52 -8.55 15.75 5.56 0.09 -8.47 16 17 C 0.11 0.57 7.03 -5.20 -0.04 0.54 16 18 N -0.35 -3.01 3.41 -63.82 -0.22 -3.22 16 19 C 0.27 1.76 12.61 -90.67 -1.14 0.62 16 20 N -0.51 -5.20 11.22 -13.78 -0.15 -5.36 16 21 C 0.29 3.48 7.82 -158.51 -1.24 2.24 16 22 C 0.31 3.97 16.01 -22.43 -0.36 3.61 16 23 N -0.37 -5.02 18.55 41.89 0.78 -4.24 16 24 N -0.22 -2.79 11.87 30.96 0.37 -2.42 16 25 H 0.03 0.34 6.87 -51.93 -0.36 -0.02 16 26 H 0.07 1.17 6.62 -51.93 -0.34 0.83 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.16 6.62 -51.93 -0.34 0.82 16 30 H 0.03 0.32 6.86 -51.93 -0.36 -0.03 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.40 3.11 6.16 -40.82 -0.25 2.86 16 37 H 0.14 0.07 8.08 -51.93 -0.42 -0.35 16 38 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.23 0.12 8.06 -52.49 -0.42 -0.30 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -35.28 339.81 -6.33 -41.61 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.89 Total: -4.08 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.84 Total: -1.40 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 1.21 Total: -48.28 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.28 -6.33 -41.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324113584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.764 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds