Wall clock time and date at job start Tue Mar 31 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46808 * 59.99929 * 4 2 1 6 6 H 1.07996 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99724 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47267 * 60.00069 * 9 7 5 11 11 H 1.48504 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47138 * 300.00053 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46493 * 109.47084 * 299.99612 * 13 2 1 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 13 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 13 18 18 N 1.46497 * 109.47115 * 180.02562 * 17 15 14 19 19 C 1.34695 * 126.73731 * 125.00113 * 18 17 15 20 20 N 1.30526 * 108.35379 * 179.97438 * 19 18 17 21 21 C 1.34189 * 109.79145 * 0.02562 * 20 19 18 22 22 C 1.43197 * 125.67174 * 180.02562 * 21 20 19 23 23 N 9.84150 * 95.11596 * 115.75635 * 2 1 3 24 24 N 1.31722 * 108.65444 * 359.75428 * 21 20 19 25 25 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 26 26 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 27 27 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 30 30 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 31 31 H 1.08993 * 109.47057 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47095 * 300.00213 * 4 2 1 33 33 H 0.96993 * 120.00031 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 35 35 H 1.09006 * 109.47216 * 60.00328 * 13 2 1 36 36 H 0.97000 * 120.00740 * 359.72857 * 14 13 2 37 37 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 38 38 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 39 39 H 1.08000 * 125.82368 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 1.7440 1.7995 -5.2566 11 1 1.7438 -0.3006 -6.4697 12 1 -0.2360 0.3995 -5.2576 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5712 -1.4796 3.7807 17 6 1.3805 0.2231 4.8999 18 7 1.8687 -0.4675 6.0961 19 6 2.5714 0.0748 7.1092 20 7 2.8182 -0.8607 7.9853 21 6 2.2897 -2.0224 7.5706 22 6 2.3590 -3.2689 8.2720 23 7 2.4076 -4.2595 8.8284 24 7 1.6916 -1.8241 6.4139 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7209 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 2.8615 -1.8822 -4.7336 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 0.9973 0.7603 2.3565 37 1 1.7480 1.2493 4.8980 38 1 0.2905 0.2275 4.9019 39 1 2.8783 1.1076 7.1838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324113584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:06 Heat of formation + Delta-G solvation = 58.105968 kcal Electronic energy + Delta-G solvation = -22123.640173 eV Core-core repulsion = 18681.756284 eV Total energy + Delta-G solvation = -3441.883889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.31736 -40.84537 -38.67238 -37.89112 -35.26515 -35.15456 -33.93129 -32.65030 -30.04877 -28.94380 -27.90219 -27.36570 -25.42403 -24.61011 -23.29042 -21.57591 -19.96166 -19.85194 -18.39151 -18.29317 -17.79440 -16.97005 -16.54872 -16.48295 -16.25429 -15.98860 -15.34625 -15.10869 -14.69340 -14.64757 -14.42476 -14.23150 -14.14544 -13.98511 -13.90361 -13.57233 -12.96403 -12.79652 -12.74613 -12.53291 -12.28640 -12.20525 -11.98980 -11.49756 -11.44520 -11.36290 -11.10968 -10.98531 -10.86415 -10.56090 -10.50259 -10.07381 -8.13542 -6.21543 -0.03308 0.85859 1.11801 1.27624 1.43476 1.45268 1.52477 1.58242 2.06379 2.30127 2.36567 2.45812 3.21210 3.48571 3.66108 3.90953 4.01696 4.11374 4.24976 4.26905 4.30676 4.62709 4.72079 4.75589 4.82809 4.92928 5.01991 5.14237 5.18170 5.42182 5.48085 5.54831 5.58180 5.59893 5.67174 5.84289 5.91686 6.02722 6.30619 6.56932 6.71878 6.94689 7.26457 7.46704 8.98823 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.037135 B = 0.002600 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.814877 B =10767.612064 C =11188.541825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.076 0.924 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.958 3.042 10 H -0.264 1.264 11 H -0.295 1.295 12 H -0.266 1.266 13 C 0.145 3.855 14 N -0.700 5.700 15 C 0.488 3.512 16 O -0.579 6.579 17 C 0.112 3.888 18 N -0.357 5.357 19 C 0.297 3.703 20 N -0.538 5.538 21 C 0.274 3.726 22 C 0.324 3.676 23 N -0.397 5.397 24 N -0.266 5.266 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.082 0.918 31 H -0.016 1.016 32 H -0.019 1.019 33 H 0.259 0.741 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.421 0.579 37 H 0.205 0.795 38 H 0.159 0.841 39 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 14.625 19.725 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.179 4.179 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.094 0.906 7 C -0.205 4.205 8 N -0.582 5.582 9 Si 0.784 3.216 10 H -0.189 1.189 11 H -0.221 1.221 12 H -0.191 1.191 13 C 0.020 3.980 14 N -0.354 5.354 15 C 0.274 3.726 16 O -0.457 6.457 17 C -0.011 4.011 18 N -0.149 5.149 19 C 0.002 3.998 20 N -0.266 5.266 21 C -0.007 4.007 22 C 0.005 3.995 23 N -0.077 5.077 24 N -0.099 5.099 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.002 0.998 32 H -0.001 1.001 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.260 0.740 37 H 0.222 0.778 38 H 0.176 0.824 39 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -5.120 11.894 20.332 24.106 hybrid contribution 0.028 0.178 -1.862 1.870 sum -5.091 12.073 18.471 22.646 Atomic orbital electron populations 1.21717 0.93445 1.00786 1.02074 1.20692 0.96752 0.96532 0.92390 1.21709 0.99871 0.94179 1.02157 1.19006 0.94200 0.94107 0.92825 1.21583 1.30315 1.12078 0.90965 0.90616 1.25982 0.95722 0.95876 1.02873 1.70123 1.38906 1.25104 1.24108 0.85598 0.78963 0.78827 0.78252 1.18886 1.22067 1.19110 1.21128 0.97647 0.95130 0.84091 1.45796 1.53298 1.32115 1.04212 1.21334 0.80463 0.84905 0.85946 1.90830 1.39782 1.28020 1.87097 1.22290 1.04601 0.97508 0.76721 1.50288 1.41111 1.04861 1.18637 1.27407 0.89077 1.01953 0.81332 1.70535 1.26418 0.97805 1.31888 1.18077 1.01454 0.89700 0.91489 1.23222 0.93478 0.90409 0.92434 1.81336 1.07822 1.09952 1.08594 1.78568 1.22181 0.96195 1.12944 0.90119 0.92746 0.95021 0.94569 0.92835 0.89903 0.99791 1.00103 0.93269 0.93761 0.94403 0.73996 0.77782 0.82354 0.68873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 8.05 71.98 0.58 -2.97 16 2 C -0.06 -2.10 0.54 -52.18 -0.03 -2.13 16 3 C -0.12 -3.38 8.05 71.98 0.58 -2.80 16 4 C 0.04 1.76 4.04 29.85 0.12 1.88 16 5 C -0.51 -26.27 7.65 25.60 0.20 -26.07 16 6 H 0.08 3.57 5.68 -2.91 -0.02 3.55 16 7 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 8 N -0.94 -56.60 13.29 21.45 0.28 -56.32 16 9 Si 0.96 42.33 29.54 68.60 2.03 44.36 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 C 0.14 4.45 4.56 86.38 0.39 4.85 16 14 N -0.70 -12.86 4.96 -463.05 -2.30 -15.15 16 15 C 0.49 9.37 7.87 87.65 0.69 10.06 16 16 O -0.58 -19.05 15.75 -3.04 -0.05 -19.10 16 17 C 0.11 0.57 7.03 85.63 0.60 1.17 16 18 N -0.36 -4.70 3.41 -355.83 -1.21 -5.92 16 19 C 0.30 2.50 12.61 180.37 2.27 4.77 16 20 N -0.54 -9.87 11.22 -197.53 -2.22 -12.09 16 21 C 0.27 6.50 7.82 135.87 1.06 7.57 16 22 C 0.32 8.51 16.01 88.32 1.41 9.92 16 23 N -0.40 -11.38 18.55 19.02 0.35 -11.02 16 24 N -0.27 -6.41 11.87 -55.97 -0.66 -7.07 16 25 H 0.08 1.49 6.87 -2.39 -0.02 1.47 16 26 H 0.05 1.74 6.62 -2.39 -0.02 1.72 16 27 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.66 6.62 -2.39 -0.02 1.65 16 30 H 0.08 1.40 6.86 -2.39 -0.02 1.38 16 31 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 33 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.04 1.37 8.14 -2.38 -0.02 1.36 16 36 H 0.42 4.08 6.16 -92.71 -0.57 3.51 16 37 H 0.21 -1.61 8.08 -2.39 -0.02 -1.63 16 38 H 0.16 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.30 -1.85 8.06 -2.91 -0.02 -1.87 16 Total: -1.00 -87.72 339.81 5.09 -82.63 By element: Atomic # 1 Polarization: -7.12 SS G_CDS: 0.52 Total: -6.60 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 8.34 Total: 6.29 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -5.75 Total: -107.57 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -87.72 5.09 -82.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324113584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.733 kcal (2) G-P(sol) polarization free energy of solvation -87.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds