Wall clock time and date at job start Tue Mar 31 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46908 * 109.46849 * 2 1 4 4 C 1.46900 * 111.00028 * 287.90611 * 3 2 1 5 5 C 1.50697 * 109.46937 * 160.34803 * 4 3 2 6 6 H 1.08006 * 120.00143 * 4.73154 * 5 4 3 7 7 C 1.37876 * 120.00086 * 184.72294 * 5 4 3 8 8 N 1.31511 * 120.00219 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99988 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47134 * 90.00215 * 9 7 5 11 11 H 1.48500 * 109.46712 * 210.00148 * 9 7 5 12 12 H 1.48498 * 109.46978 * 329.99819 * 9 7 5 13 13 C 1.46897 * 110.99874 * 163.95200 * 3 2 1 14 14 N 1.46498 * 109.47195 * 278.95744 * 13 3 2 15 15 N 1.39301 * 118.65032 * 284.97436 * 14 13 3 16 16 C 1.29909 * 123.39339 * 180.02562 * 15 14 13 17 17 C 1.46100 * 119.78486 * 0.02562 * 16 15 14 18 18 C 1.37229 * 137.26567 * 180.27683 * 17 16 15 19 19 N 1.34692 * 106.81693 * 180.08390 * 18 17 16 20 20 C 1.46504 * 124.06981 * 179.89444 * 19 18 17 21 21 N 1.28629 * 111.85563 * 359.63465 * 19 18 17 22 22 C 1.30956 * 110.78633 * 0.22648 * 21 19 18 23 23 C 1.34925 * 118.65379 * 105.00065 * 14 13 3 24 24 O 1.21776 * 120.65710 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.47457 * 299.11996 * 1 2 3 26 26 H 1.08997 * 109.47413 * 59.12374 * 1 2 3 27 27 H 1.09007 * 109.47007 * 179.12508 * 1 2 3 28 28 H 1.08997 * 109.47160 * 240.00582 * 2 1 3 29 29 H 1.08997 * 109.47308 * 120.00228 * 2 1 3 30 30 H 1.08994 * 109.47001 * 280.35377 * 4 3 2 31 31 H 1.08996 * 109.47051 * 40.35364 * 4 3 2 32 32 H 0.96998 * 120.00804 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47059 * 158.95290 * 13 3 2 34 34 H 1.09001 * 109.47183 * 38.95604 * 13 3 2 35 35 H 1.08000 * 120.10949 * 179.97438 * 16 15 14 36 36 H 1.07993 * 126.59183 * 359.94440 * 18 17 16 37 37 H 1.08994 * 109.47501 * 269.72748 * 20 19 18 38 38 H 1.08995 * 109.46803 * 29.73427 * 20 19 18 39 39 H 1.09008 * 109.46372 * 149.72809 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7975 2.0220 -1.3050 5 6 1.8482 3.5199 -1.1480 6 1 2.1029 3.9544 -0.1926 7 6 1.5697 4.3357 -2.2240 8 7 1.2592 3.8066 -3.3873 9 14 1.6332 6.1925 -2.0296 10 1 3.0037 6.6756 -2.3353 11 1 0.6665 6.8215 -2.9650 12 1 1.2799 6.5564 -0.6339 13 6 3.4376 1.4421 0.3791 14 7 3.5564 1.3728 1.8376 15 7 3.2324 2.5006 2.5884 16 6 3.3046 2.5413 3.8849 17 6 3.7451 1.3610 4.6247 18 6 3.9436 1.0096 5.9363 19 7 4.3727 -0.2672 5.9370 20 6 4.7028 -1.0215 7.1488 21 7 4.4525 -0.7461 4.7458 22 6 4.0962 0.1499 3.8598 23 6 3.9755 0.2195 2.3986 24 8 4.2490 -0.7442 1.7062 25 1 -0.3634 0.5001 0.8978 26 1 -0.3634 0.5274 -0.8820 27 1 -0.3633 -1.0276 -0.0157 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.5728 1.7031 -2.0015 31 1 0.8206 1.7300 -1.6902 32 1 1.0628 4.3805 -4.1443 33 1 3.8716 2.3765 0.0232 34 1 3.9676 0.6016 -0.0689 35 1 3.0406 3.4451 4.4141 36 1 3.7881 1.6369 6.8015 37 1 5.7581 -0.8857 7.3851 38 1 4.0952 -0.6601 7.9784 39 1 4.5005 -2.0799 6.9842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324193459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:11 Heat of formation + Delta-G solvation = 82.305065 kcal Electronic energy + Delta-G solvation = -23283.132912 eV Core-core repulsion = 19842.298375 eV Total energy + Delta-G solvation = -3440.834537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.66359 -41.16413 -38.49705 -37.96640 -34.84537 -34.44906 -33.41873 -31.81766 -31.37204 -29.34419 -28.46940 -26.38864 -25.00492 -24.53423 -23.76160 -22.05361 -21.42809 -19.49024 -19.41003 -18.51842 -17.80162 -17.62811 -16.98352 -16.80654 -16.44868 -16.26882 -15.71558 -15.47473 -15.22975 -14.92768 -14.22651 -13.93063 -13.77520 -13.58028 -13.56852 -13.53352 -13.36355 -12.91150 -12.73486 -12.61387 -12.45309 -12.38035 -12.11929 -11.67486 -11.57591 -11.30241 -10.92276 -10.83912 -10.54935 -10.36886 -9.37588 -9.15651 -8.13277 -6.22306 0.17641 0.28865 0.95336 1.46912 1.48079 1.48363 1.60864 1.67379 2.39553 2.47732 2.69413 3.14373 3.23991 3.28730 3.65865 3.95866 4.03453 4.08159 4.30045 4.31932 4.37757 4.42427 4.46056 4.52391 4.59802 4.72417 4.81839 4.87904 4.92254 5.00983 5.16466 5.22468 5.25553 5.34673 5.74101 5.76692 6.07034 6.20085 6.50217 6.51190 6.82334 6.92835 7.19152 7.46461 8.97632 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022578 B = 0.004205 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.830027 B = 6657.333976 C = 7401.904684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.054 3.946 3 N -0.542 5.542 4 C 0.212 3.788 5 C -0.514 4.514 6 H 0.067 0.933 7 C 0.003 3.997 8 N -0.937 5.937 9 Si 0.970 3.030 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.310 3.690 14 N -0.413 5.413 15 N -0.269 5.269 16 C 0.173 3.827 17 C -0.233 4.233 18 C 0.085 3.915 19 N -0.272 5.272 20 C 0.071 3.929 21 N -0.259 5.259 22 C -0.051 4.051 23 C 0.560 3.440 24 O -0.571 6.571 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.020 0.980 29 H 0.052 0.948 30 H -0.035 1.035 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.244 0.756 36 H 0.264 0.736 37 H 0.107 0.893 38 H 0.146 0.854 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 -4.007 27.389 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.074 4.074 3 N -0.268 5.268 4 C 0.087 3.913 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.195 4.195 8 N -0.577 5.577 9 Si 0.795 3.205 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.186 1.186 13 C 0.098 3.902 14 N -0.232 5.232 15 N -0.076 5.076 16 C -0.033 4.033 17 C -0.246 4.246 18 C -0.064 4.064 19 N -0.059 5.059 20 C -0.066 4.066 21 N -0.093 5.093 22 C -0.214 4.214 23 C 0.349 3.651 24 O -0.449 6.449 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.038 0.962 29 H 0.070 0.930 30 H -0.017 1.017 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.259 0.741 36 H 0.279 0.721 37 H 0.126 0.874 38 H 0.164 0.836 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.217 -5.011 26.483 27.454 hybrid contribution 0.447 0.141 -0.899 1.014 sum 5.664 -4.870 25.584 26.652 Atomic orbital electron populations 1.21644 0.93639 1.01639 1.01824 1.22044 0.97369 0.89127 0.98841 1.61801 1.16393 1.15936 1.32667 1.19425 0.94780 0.94233 0.82891 1.21444 1.45979 0.91181 0.96646 0.91496 1.25882 0.94862 1.04098 0.94667 1.70088 1.48627 1.37139 1.01892 0.85367 0.77844 0.78975 0.78334 1.20037 1.21039 1.18603 1.21666 0.90594 1.01967 0.75956 1.48908 1.59188 1.07339 1.07733 1.74591 1.15554 1.07826 1.09607 1.25049 0.93163 0.97633 0.87487 1.21627 1.13083 0.95597 0.94316 1.23650 0.97840 0.86474 0.98391 1.46254 1.43549 1.10606 1.05489 1.22834 1.05354 0.97860 0.80546 1.72969 1.19542 1.25433 0.91367 1.22551 1.10073 0.94965 0.93794 1.17761 0.78030 0.82799 0.86531 1.90802 1.52506 1.36397 1.65160 0.92657 0.93536 0.90617 0.96165 0.92994 1.01699 0.95958 0.92801 0.88610 0.92212 0.74066 0.72065 0.87427 0.83600 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 9.99 71.98 0.72 -4.33 16 2 C 0.05 2.40 5.53 86.30 0.48 2.87 16 3 N -0.54 -26.23 4.48 -913.19 -4.09 -30.32 16 4 C 0.21 11.79 4.54 85.56 0.39 12.17 16 5 C -0.51 -29.69 8.51 25.60 0.22 -29.47 16 6 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 7 C 0.00 0.14 5.46 84.65 0.46 0.61 16 8 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16 9 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 13 C 0.31 14.25 5.39 170.81 0.92 15.17 16 14 N -0.41 -17.08 3.66 -476.21 -1.74 -18.82 16 15 N -0.27 -9.54 11.31 -53.13 -0.60 -10.14 16 16 C 0.17 4.02 11.62 87.02 1.01 5.03 16 17 C -0.23 -5.22 6.68 -19.04 -0.13 -5.34 16 18 C 0.08 0.93 11.50 84.02 0.97 1.90 16 19 N -0.27 -4.16 3.67 -368.14 -1.35 -5.51 16 20 C 0.07 0.20 11.24 127.77 1.44 1.64 16 21 N -0.26 -7.42 11.87 -45.17 -0.54 -7.96 16 22 C -0.05 -1.72 7.76 43.95 0.34 -1.38 16 23 C 0.56 23.42 7.00 86.45 0.61 24.02 16 24 O -0.57 -27.43 15.78 -4.59 -0.07 -27.50 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 1.96 6.52 -2.39 -0.02 1.94 16 27 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.02 0.90 8.05 -2.39 -0.02 0.89 16 29 H 0.05 2.32 6.46 -2.39 -0.02 2.31 16 30 H -0.03 -2.06 8.00 -2.39 -0.02 -2.08 16 31 H 0.02 1.32 6.24 -2.39 -0.01 1.30 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.10 4.59 7.25 -2.39 -0.02 4.57 16 34 H 0.06 2.84 6.73 -2.39 -0.02 2.82 16 35 H 0.24 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.26 -0.82 8.06 -2.91 -0.02 -0.84 16 37 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.15 -0.85 8.12 -2.39 -0.02 -0.86 16 39 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -88.60 332.31 2.40 -86.20 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: 1.07 Total: 1.03 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 7.42 Total: 22.89 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -8.04 Total: -129.53 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.07 Total: -27.50 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -88.60 2.40 -86.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324193459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.505 kcal (2) G-P(sol) polarization free energy of solvation -88.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds