Wall clock time and date at job start Tue Mar 31 2020 08:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48503 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47127 * 299.99572 * 3 2 1 6 6 H 1.48497 * 109.47118 * 59.99795 * 3 2 1 7 7 C 1.37873 * 119.99289 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00499 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47416 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47416 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00058 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00286 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00185 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47311 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47162 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.46972 * 180.02562 * 16 15 14 18 18 C 1.42893 * 113.99793 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99993 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97930 * 19 18 17 25 25 H 0.97008 * 119.99662 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47438 * 60.00142 * 9 7 2 27 27 H 1.09005 * 109.47308 * 300.00048 * 9 7 2 28 28 H 1.08997 * 109.47404 * 59.99521 * 10 9 7 29 29 H 1.09005 * 109.46709 * 300.00155 * 10 9 7 30 30 H 0.97003 * 119.99308 * 359.97438 * 13 11 10 31 31 H 1.09005 * 109.47101 * 60.00109 * 14 13 11 32 32 H 1.08993 * 109.47064 * 300.00304 * 14 13 11 33 33 H 1.09001 * 109.46447 * 60.00062 * 15 14 13 34 34 H 1.09005 * 109.47034 * 300.00372 * 15 14 13 35 35 H 1.09005 * 109.47112 * 60.00208 * 16 15 14 36 36 H 1.08993 * 109.47202 * 300.00311 * 16 15 14 37 37 H 1.09005 * 109.47744 * 60.00256 * 18 17 16 38 38 H 1.09000 * 109.47353 * 299.99456 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4915 -4.9672 0.0025 12 8 0.2787 -4.9672 0.0024 13 7 2.1653 -6.1345 0.0031 14 6 1.4327 -7.4031 0.0043 15 6 2.4269 -8.5662 0.0042 16 6 1.6618 -9.8911 0.0060 17 8 2.5904 -10.9773 0.0065 18 6 1.9757 -12.2673 0.0077 19 6 3.0424 -13.3320 0.0075 20 6 3.5324 -13.8196 1.2046 21 6 4.5104 -14.7965 1.2044 22 6 4.9979 -15.2863 0.0071 23 6 4.5117 -14.7949 -1.1899 24 6 3.5304 -13.8212 -1.1897 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6238 -2.5567 0.8903 28 1 2.8711 -3.6041 0.8922 29 1 2.8724 -3.6048 -0.8878 30 1 3.1353 -6.1345 0.0028 31 1 0.8058 -7.4615 -0.8855 32 1 0.8064 -7.4601 0.8944 33 1 3.0541 -8.5079 0.8937 34 1 3.0530 -8.5089 -0.8863 35 1 1.0342 -9.9495 -0.8833 36 1 1.0361 -9.9480 0.8966 37 1 1.3553 -12.3751 -0.8820 38 1 1.3559 -12.3737 0.8980 39 1 3.1512 -13.4372 2.1400 40 1 4.8936 -15.1772 2.1396 41 1 5.7617 -16.0499 0.0071 42 1 4.8957 -15.1743 -2.1253 43 1 3.1470 -13.4408 -2.1250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324725520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:33 Heat of formation + Delta-G solvation = -81.372395 kcal Electronic energy + Delta-G solvation = -21016.301761 eV Core-core repulsion = 17639.617229 eV Total energy + Delta-G solvation = -3376.684532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.78035 -39.16128 -38.08377 -35.30582 -33.42594 -32.72856 -31.51279 -31.30059 -30.65723 -26.91337 -25.92581 -24.58210 -22.98512 -22.10604 -21.64242 -21.34159 -19.52495 -17.35776 -16.96915 -16.80647 -16.69255 -15.85170 -15.62188 -15.53535 -15.36417 -14.94738 -14.44588 -14.27521 -14.09167 -13.78398 -13.21086 -13.02297 -12.79592 -12.77681 -12.19626 -12.06942 -12.00511 -11.57371 -11.47108 -11.27613 -11.18783 -11.13132 -10.92694 -10.56477 -9.96658 -9.94006 -9.64900 -9.31552 -9.25352 -9.15624 -8.99063 -8.77648 -8.30687 -5.94733 -3.98958 0.85576 1.00736 3.04868 3.27913 3.33729 3.40530 3.43843 3.49537 3.83753 4.40238 4.42039 4.49121 4.60818 4.68566 4.71623 4.82795 4.84891 4.96842 4.98792 5.13694 5.22625 5.23953 5.32544 5.40312 5.50940 5.56180 5.63497 5.64808 5.91571 6.01152 6.04154 6.10503 6.18672 6.25604 6.27237 6.57539 6.71062 6.83898 6.91935 7.76488 7.88333 7.90626 8.08988 8.40567 8.80120 9.09985 9.64576 11.16279 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.047399 B = 0.001690 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.593144 B =16559.683224 C =16819.277199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.536 6.536 13 N -0.744 5.744 14 C 0.122 3.878 15 C -0.129 4.129 16 C 0.065 3.935 17 O -0.382 6.382 18 C 0.102 3.898 19 C -0.090 4.090 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.099 4.099 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.398 0.602 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.825 -32.232 0.016 33.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.411 6.411 13 N -0.399 5.399 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.012 4.012 17 O -0.301 6.301 18 C 0.026 3.974 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.232 0.768 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.953 -32.073 0.017 33.044 hybrid contribution 0.660 0.804 0.000 1.041 sum 8.614 -31.269 0.017 32.433 Atomic orbital electron populations 1.70017 1.06056 1.26436 1.50346 1.25031 0.94831 0.99247 0.95332 0.86528 0.79999 0.83820 0.77561 1.19758 1.21030 1.21035 1.21272 0.92990 0.91022 1.51189 0.92529 1.18910 0.93214 0.89417 0.98638 1.21865 1.00711 0.91900 1.02523 1.21575 0.88648 0.85645 0.74354 1.90666 1.14515 1.87672 1.48248 1.46167 1.10124 1.05472 1.78139 1.21064 0.94266 0.82556 1.02330 1.21671 0.98897 0.92011 1.04075 1.22388 0.91839 0.86167 1.00806 1.87944 1.33531 1.13176 1.95485 1.21302 0.93037 0.81938 1.01112 1.19626 0.98661 0.97111 0.93624 1.21099 0.96517 0.96462 0.97611 1.21171 0.97337 0.97422 0.98274 1.21221 0.99697 0.99815 0.92639 1.21172 0.97306 0.97446 0.98276 1.21098 0.96498 0.96489 0.97606 0.93031 0.95808 0.95813 0.90215 0.90210 0.76807 0.91714 0.91708 0.90412 0.90404 0.92790 0.92796 0.92315 0.92310 0.85873 0.85863 0.85990 0.85861 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.63 13.29 55.43 0.74 -26.90 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.67 5.64 -27.88 -0.16 -2.82 16 11 C 0.51 9.93 7.83 -10.99 -0.09 9.84 16 12 O -0.54 -12.83 15.98 5.56 0.09 -12.74 16 13 N -0.74 -10.49 5.56 -60.30 -0.33 -10.82 16 14 C 0.12 1.48 5.67 -4.04 -0.02 1.46 16 15 C -0.13 -1.19 5.70 -26.73 -0.15 -1.34 16 16 C 0.06 0.56 5.94 37.16 0.22 0.78 16 17 O -0.38 -3.78 10.33 -35.23 -0.36 -4.14 16 18 C 0.10 0.80 6.06 36.01 0.22 1.02 16 19 C -0.09 -0.75 5.51 -104.62 -0.58 -1.32 16 20 C -0.10 -0.76 9.70 -39.58 -0.38 -1.15 16 21 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 22 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 24 C -0.10 -0.76 9.70 -39.58 -0.38 -1.15 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.40 4.39 8.47 -40.82 -0.35 4.05 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 38 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 39 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -35.49 369.05 -9.44 -44.93 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.06 Total: -1.38 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -3.05 Total: -11.30 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.40 Total: -37.72 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.27 Total: -16.88 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.49 -9.44 -44.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324725520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.441 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds