Wall clock time and date at job start Tue Mar 31 2020 08:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48503 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47127 * 299.99572 * 3 2 1 6 6 H 1.48497 * 109.47118 * 59.99795 * 3 2 1 7 7 C 1.37873 * 119.99289 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00499 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47416 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47416 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00058 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00286 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00185 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47311 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47162 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.46972 * 180.02562 * 16 15 14 18 18 C 1.42893 * 113.99793 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47070 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 89.99993 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97930 * 19 18 17 25 25 H 0.97008 * 119.99662 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47438 * 60.00142 * 9 7 2 27 27 H 1.09005 * 109.47308 * 300.00048 * 9 7 2 28 28 H 1.08997 * 109.47404 * 59.99521 * 10 9 7 29 29 H 1.09005 * 109.46709 * 300.00155 * 10 9 7 30 30 H 0.97003 * 119.99308 * 359.97438 * 13 11 10 31 31 H 1.09005 * 109.47101 * 60.00109 * 14 13 11 32 32 H 1.08993 * 109.47064 * 300.00304 * 14 13 11 33 33 H 1.09001 * 109.46447 * 60.00062 * 15 14 13 34 34 H 1.09005 * 109.47034 * 300.00372 * 15 14 13 35 35 H 1.09005 * 109.47112 * 60.00208 * 16 15 14 36 36 H 1.08993 * 109.47202 * 300.00311 * 16 15 14 37 37 H 1.09005 * 109.47744 * 60.00256 * 18 17 16 38 38 H 1.09000 * 109.47353 * 299.99456 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4915 -4.9672 0.0025 12 8 0.2787 -4.9672 0.0024 13 7 2.1653 -6.1345 0.0031 14 6 1.4327 -7.4031 0.0043 15 6 2.4269 -8.5662 0.0042 16 6 1.6618 -9.8911 0.0060 17 8 2.5904 -10.9773 0.0065 18 6 1.9757 -12.2673 0.0077 19 6 3.0424 -13.3320 0.0075 20 6 3.5324 -13.8196 1.2046 21 6 4.5104 -14.7965 1.2044 22 6 4.9979 -15.2863 0.0071 23 6 4.5117 -14.7949 -1.1899 24 6 3.5304 -13.8212 -1.1897 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6238 -2.5567 0.8903 28 1 2.8711 -3.6041 0.8922 29 1 2.8724 -3.6048 -0.8878 30 1 3.1353 -6.1345 0.0028 31 1 0.8058 -7.4615 -0.8855 32 1 0.8064 -7.4601 0.8944 33 1 3.0541 -8.5079 0.8937 34 1 3.0530 -8.5089 -0.8863 35 1 1.0342 -9.9495 -0.8833 36 1 1.0361 -9.9480 0.8966 37 1 1.3553 -12.3751 -0.8820 38 1 1.3559 -12.3737 0.8980 39 1 3.1512 -13.4372 2.1400 40 1 4.8936 -15.1772 2.1396 41 1 5.7617 -16.0499 0.0071 42 1 4.8957 -15.1743 -2.1253 43 1 3.1470 -13.4408 -2.1250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324725520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:32 Heat of formation + Delta-G solvation = -104.367317 kcal Electronic energy + Delta-G solvation = -21017.298896 eV Core-core repulsion = 17639.617229 eV Total energy + Delta-G solvation = -3377.681667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.68940 -40.28791 -38.77470 -36.50152 -35.53332 -33.60656 -32.95476 -31.97935 -31.79779 -28.20348 -27.09336 -25.77272 -23.49081 -23.48757 -22.73424 -22.14633 -21.06891 -18.79804 -17.92839 -17.66718 -17.40596 -17.38181 -16.65550 -16.65235 -16.39734 -16.21812 -15.94780 -15.11353 -14.99155 -14.69584 -14.29794 -14.15995 -14.11426 -13.69075 -13.37680 -13.26897 -13.22161 -12.91440 -12.83421 -12.43109 -12.24277 -12.12087 -11.91376 -11.85809 -11.83669 -11.62800 -11.27701 -10.74578 -10.61111 -10.57287 -10.07149 -9.83231 -9.77214 -8.17545 -6.31497 0.32676 0.49043 1.42932 1.44343 1.57700 1.72092 2.14777 2.43888 2.65966 3.12674 3.15601 3.84429 3.90253 3.94878 3.95676 4.13923 4.17124 4.24985 4.31539 4.32743 4.43181 4.47289 4.53377 4.54369 4.58485 4.63128 4.69391 4.76230 5.05671 5.07236 5.09551 5.14863 5.15997 5.46204 5.53297 5.54234 5.60662 5.64429 5.65654 5.86505 6.08533 6.18483 6.19089 6.62138 6.87369 7.35375 7.39072 8.95360 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.047399 B = 0.001690 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.593144 B =16559.683224 C =16819.277199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.040 3.960 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.591 6.591 13 N -0.719 5.719 14 C 0.122 3.878 15 C -0.115 4.115 16 C 0.064 3.936 17 O -0.399 6.399 18 C 0.100 3.900 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.114 4.114 25 H 0.262 0.738 26 H -0.017 1.017 27 H -0.018 1.018 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.417 0.583 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.503 -33.064 0.016 35.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.160 4.160 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.373 5.373 14 C -0.002 4.002 15 C -0.152 4.152 16 C -0.013 4.013 17 O -0.319 6.319 18 C 0.024 3.976 19 C -0.108 4.108 20 C -0.132 4.132 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.132 4.132 25 H 0.071 0.929 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.255 0.745 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.700 -32.959 0.017 34.652 hybrid contribution -0.174 0.953 0.000 0.968 sum 10.526 -32.006 0.017 33.693 Atomic orbital electron populations 1.70192 1.08316 1.27714 1.51578 1.26147 0.95736 1.03973 0.94654 0.85255 0.79284 0.78045 0.77529 1.17618 1.20638 1.20651 1.21763 0.94050 0.91628 1.50630 0.90546 1.18713 0.93788 0.92545 0.94749 1.21640 0.99309 0.90064 1.04938 1.21342 0.87801 0.86819 0.74166 1.90653 1.16739 1.88446 1.51214 1.45873 1.11119 1.04691 1.75614 1.21164 0.94867 0.82369 1.01799 1.21513 0.98056 0.91011 1.04663 1.22390 0.91691 0.85634 1.01566 1.87901 1.34390 1.14007 1.95645 1.21415 0.93131 0.81028 1.02006 1.19809 0.99278 0.97631 0.94128 1.21317 0.97037 0.96998 0.97845 1.21471 0.97053 0.97144 0.99338 1.21554 0.99954 1.00072 0.92431 1.21471 0.97024 0.97169 0.99340 1.21316 0.97018 0.97022 0.97839 0.92884 0.99900 0.99910 0.87683 0.87673 0.74535 0.92328 0.92321 0.89795 0.89785 0.92099 0.92106 0.91411 0.91406 0.85197 0.84096 0.83903 0.84095 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.90 13.29 21.45 0.28 -59.62 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 4 H -0.25 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.23 4.26 29.85 0.13 2.36 16 10 C -0.12 -4.82 5.64 29.85 0.17 -4.65 16 11 C 0.51 19.80 7.83 87.66 0.69 20.48 16 12 O -0.59 -29.25 15.98 -3.02 -0.05 -29.30 16 13 N -0.72 -19.06 5.56 -463.07 -2.57 -21.63 16 14 C 0.12 2.81 5.67 86.38 0.49 3.30 16 15 C -0.11 -1.88 5.70 30.59 0.17 -1.71 16 16 C 0.06 1.00 5.94 71.98 0.43 1.43 16 17 O -0.40 -7.37 10.33 -148.98 -1.54 -8.91 16 18 C 0.10 1.47 6.06 71.24 0.43 1.90 16 19 C -0.11 -1.72 5.51 -19.86 -0.11 -1.83 16 20 C -0.11 -1.67 9.70 22.27 0.22 -1.45 16 21 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 22 C -0.12 -1.42 10.05 22.27 0.22 -1.19 16 23 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 24 C -0.11 -1.67 9.70 22.27 0.22 -1.45 16 25 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 26 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 27 H -0.02 -1.11 8.10 -2.38 -0.02 -1.13 16 28 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 29 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 30 H 0.42 7.97 8.47 -92.71 -0.79 7.19 16 31 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.83 8.08 -2.38 -0.02 0.81 16 38 H 0.07 0.83 8.09 -2.39 -0.02 0.82 16 39 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.14 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -79.47 369.05 2.54 -76.93 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.19 Total: 12.51 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 4.19 Total: -16.55 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -2.29 Total: -81.25 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.59 Total: -38.21 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -79.47 2.54 -76.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324725520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.440 kcal (2) G-P(sol) polarization free energy of solvation -79.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds