Wall clock time and date at job start Tue Mar 31 2020 07:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34944 * 126.03766 * 2 1 4 4 C 1.35320 * 107.74884 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.04317 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47248 * 89.99616 * 5 4 3 7 7 N 1.29946 * 126.29043 * 269.97839 * 6 5 4 8 8 O 1.21301 * 110.25130 * 179.72201 * 7 6 5 9 9 C 1.33645 * 109.81141 * 0.47262 * 8 7 6 10 10 C 1.50698 * 126.55046 * 179.79867 * 9 8 7 11 11 H 1.09000 * 109.46862 * 194.68450 * 10 9 8 12 12 N 1.46901 * 109.47246 * 314.68564 * 10 9 8 13 13 C 1.53006 * 109.46914 * 74.68502 * 10 9 8 14 14 C 1.52999 * 109.46626 * 174.99639 * 13 10 9 15 15 C 1.50706 * 109.46957 * 180.02562 * 14 13 10 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00347 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99775 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00546 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00404 * 19 17 15 22 22 H 1.48499 * 109.47135 * 330.00745 * 19 17 15 23 23 N 1.31130 * 106.89410 * 359.53473 * 9 8 7 24 24 C 1.39869 * 107.91780 * 0.25883 * 4 3 2 25 25 N 1.30845 * 108.20211 * 359.55710 * 24 4 3 26 26 H 1.08999 * 109.47317 * 90.00774 * 1 2 3 27 27 H 1.09004 * 109.47622 * 210.00072 * 1 2 3 28 28 H 1.08998 * 109.47515 * 329.99996 * 1 2 3 29 29 H 1.08004 * 126.12873 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.46813 * 330.00097 * 5 4 3 31 31 H 1.08995 * 109.47322 * 209.99692 * 5 4 3 32 32 H 1.00893 * 110.99780 * 296.04661 * 12 10 9 33 33 H 1.00906 * 110.99754 * 59.99985 * 12 10 9 34 34 H 1.08993 * 109.46955 * 295.00111 * 13 10 9 35 35 H 1.09000 * 109.47050 * 54.99940 * 13 10 9 36 36 H 1.08993 * 109.47839 * 299.99931 * 14 13 10 37 37 H 1.09000 * 109.47160 * 60.00369 * 14 13 10 38 38 H 0.96991 * 119.99882 * 179.97438 * 18 17 15 39 39 H 1.07996 * 125.90047 * 179.73751 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5452 -0.0013 6 6 5.1767 1.8385 1.4192 7 7 4.7749 2.8393 2.1442 8 8 5.2822 2.7907 3.2449 9 6 6.0880 1.7276 3.3258 10 6 6.9076 1.3115 4.5200 11 1 7.6495 0.5745 4.2125 12 7 7.5878 2.4866 5.0807 13 6 5.9897 0.6994 5.5802 14 6 6.8343 0.1641 6.7382 15 6 5.9303 -0.4393 7.7823 16 1 4.8605 -0.4411 7.6343 17 6 6.4690 -0.9890 8.9262 18 7 5.6802 -1.5160 9.8371 19 14 8.3195 -0.9864 9.1817 20 1 8.7198 0.2565 9.8889 21 1 8.7085 -2.1661 9.9956 22 1 9.0012 -1.0476 7.8639 23 7 6.0248 1.1126 2.1694 24 6 3.5346 -0.7321 -0.0070 25 7 2.2890 -1.1328 -0.0005 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.9281 2.1193 -0.0004 30 1 4.5439 2.4800 -0.5152 31 1 5.5818 1.0340 -0.5154 32 1 8.2480 2.8709 4.4215 33 1 6.9209 3.1850 5.3734 34 1 5.3051 1.4617 5.9518 35 1 5.4189 -0.1175 5.1388 36 1 7.5190 -0.5982 6.3667 37 1 7.4051 0.9811 7.1797 38 1 6.0593 -1.9030 10.6416 39 1 4.4053 -1.3710 -0.0129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325896468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:31 Heat of formation + Delta-G solvation = 138.907628 kcal Electronic energy + Delta-G solvation = -22284.045415 eV Core-core repulsion = 18845.665349 eV Total energy + Delta-G solvation = -3438.380066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.47195 -41.42007 -36.82045 -36.14212 -33.91328 -33.08552 -32.40909 -31.04504 -30.60286 -28.53983 -26.86775 -26.12048 -24.13495 -23.24577 -21.42106 -21.20092 -20.45807 -19.88440 -17.97196 -17.47003 -16.97105 -16.64358 -16.04374 -15.76271 -15.34987 -14.71083 -14.33281 -14.17763 -14.06663 -13.89483 -13.45308 -12.95124 -12.81292 -12.74310 -12.57687 -12.41722 -12.22445 -11.83890 -11.46634 -11.05993 -10.97826 -10.89685 -10.76141 -10.23854 -9.94775 -9.76770 -9.65570 -9.51119 -9.13832 -8.95470 -8.70498 -8.46553 -5.98596 -3.96635 1.21257 1.62292 2.19255 2.33856 2.57593 2.91730 3.38494 3.45118 3.50513 3.73920 4.07539 4.25984 4.51961 4.54632 4.61937 4.80512 4.84988 4.89980 5.05744 5.08850 5.22214 5.30694 5.36916 5.43959 5.52912 5.63118 5.80560 5.85195 6.05276 6.29257 6.40039 6.42085 6.71730 6.82737 7.03438 7.35791 7.41129 7.45593 7.53015 7.85127 8.24758 8.58153 9.05844 9.63817 11.14898 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.003406 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.152281 B = 8219.176140 C = 9204.562115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.377 5.377 3 C 0.070 3.930 4 C -0.243 4.243 5 C 0.056 3.944 6 C 0.175 3.825 7 N -0.392 5.392 8 O 0.070 5.930 9 C 0.158 3.842 10 C 0.183 3.817 11 H 0.124 0.876 12 N -0.817 5.817 13 C -0.093 4.093 14 C -0.003 4.003 15 C -0.522 4.522 16 H 0.069 0.931 17 C 0.066 3.934 18 N -0.906 5.906 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.263 1.263 23 N -0.480 5.480 24 C 0.068 3.932 25 N -0.296 5.296 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.174 0.826 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.341 0.659 33 H 0.351 0.649 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.016 0.984 37 H 0.031 0.969 38 H 0.262 0.738 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.309 8.722 -22.684 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.158 5.158 3 C -0.077 4.077 4 C -0.255 4.255 5 C 0.016 3.984 6 C -0.098 4.098 7 N -0.102 5.102 8 O 0.014 5.986 9 C -0.065 4.065 10 C 0.068 3.932 11 H 0.142 0.858 12 N -0.346 5.346 13 C -0.132 4.132 14 C -0.041 4.041 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.135 4.135 18 N -0.545 5.545 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.188 1.188 23 N -0.214 5.214 24 C -0.119 4.119 25 N -0.116 5.116 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.191 0.809 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.034 0.966 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.461 7.424 -22.527 24.339 hybrid contribution 0.870 1.160 -0.340 1.489 sum -4.591 8.584 -22.867 24.852 Atomic orbital electron populations 1.21879 0.74027 1.04773 1.03338 1.48489 1.06790 1.03861 1.56645 1.22346 0.90827 0.93501 1.01028 1.19691 0.93498 0.94009 1.18334 1.18056 0.95157 0.99429 0.85793 1.25846 0.94594 0.89098 1.00291 1.74548 1.19309 1.23353 0.92964 1.85240 1.44422 1.41921 1.27009 1.31015 0.92672 0.84716 0.98118 1.20805 0.93411 0.94114 0.84842 0.85803 1.58860 1.20956 1.11130 1.43636 1.21637 0.97236 0.99576 0.94761 1.19477 0.95613 0.96204 0.92767 1.21147 0.94866 1.37681 1.02289 0.91308 1.25015 0.98019 0.94748 0.95732 1.69921 1.35135 1.39890 1.09569 0.86730 0.86182 0.77477 0.78603 1.20262 1.21704 1.18760 1.71893 1.19607 1.27690 1.02191 1.23868 0.95319 0.94302 0.98413 1.77422 1.01655 1.08034 1.24531 0.90657 0.89087 0.89431 0.80897 0.88772 0.87875 0.84603 0.83525 0.91913 0.91747 0.96592 0.95043 0.92814 0.79667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.47 59.84 0.69 1.35 16 2 N -0.38 -4.10 4.01 -68.17 -0.27 -4.38 16 3 C 0.07 0.71 11.40 -17.22 -0.20 0.52 16 4 C -0.24 -2.72 5.34 -105.05 -0.56 -3.28 16 5 C 0.06 0.56 6.33 -29.04 -0.18 0.38 16 6 C 0.18 2.42 7.45 -156.37 -1.17 1.25 16 7 N -0.39 -5.81 12.16 30.90 0.38 -5.44 16 8 O 0.07 1.06 11.30 18.09 0.20 1.26 16 9 C 0.16 2.36 7.31 -13.06 -0.10 2.27 16 10 C 0.18 2.75 3.29 -68.86 -0.23 2.52 16 11 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 12 N -0.82 -10.69 8.68 -5.65 -0.05 -10.73 16 13 C -0.09 -1.77 4.78 -26.73 -0.13 -1.90 16 14 C 0.00 -0.07 3.93 -27.88 -0.11 -0.18 16 15 C -0.52 -14.83 9.66 -34.44 -0.33 -15.17 16 16 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 18 N -0.91 -28.18 13.96 55.43 0.77 -27.40 16 19 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 23 N -0.48 -7.32 11.55 -9.87 -0.11 -7.43 16 24 C 0.07 0.83 11.96 -17.36 -0.21 0.62 16 25 N -0.30 -3.97 12.58 30.62 0.39 -3.58 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.34 3.58 9.06 -39.30 -0.36 3.22 16 33 H 0.35 4.28 8.98 -39.29 -0.35 3.93 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 37 H 0.03 0.72 7.18 -51.93 -0.37 0.35 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 39 H 0.19 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -35.33 340.80 -6.12 -41.44 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.27 Total: 3.77 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -2.62 Total: -9.80 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 1.10 Total: -58.97 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.33 -6.12 -41.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325896468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.353 kcal (2) G-P(sol) polarization free energy of solvation -35.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds