Wall clock time and date at job start Tue Mar 31 2020 07:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34944 * 126.03766 * 2 1 4 4 C 1.35320 * 107.74884 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.04317 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47248 * 89.99616 * 5 4 3 7 7 N 1.29946 * 126.29043 * 269.97839 * 6 5 4 8 8 O 1.21301 * 110.25130 * 179.72201 * 7 6 5 9 9 C 1.33645 * 109.81141 * 0.47262 * 8 7 6 10 10 C 1.50698 * 126.55046 * 179.79867 * 9 8 7 11 11 H 1.09000 * 109.46862 * 194.68450 * 10 9 8 12 12 N 1.46901 * 109.47246 * 314.68564 * 10 9 8 13 13 C 1.53006 * 109.46914 * 74.68502 * 10 9 8 14 14 C 1.52999 * 109.46626 * 174.99639 * 13 10 9 15 15 C 1.50706 * 109.46957 * 180.02562 * 14 13 10 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00347 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99775 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00546 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00404 * 19 17 15 22 22 H 1.48499 * 109.47135 * 330.00745 * 19 17 15 23 23 N 1.31130 * 106.89410 * 359.53473 * 9 8 7 24 24 C 1.39869 * 107.91780 * 0.25883 * 4 3 2 25 25 N 1.30845 * 108.20211 * 359.55710 * 24 4 3 26 26 H 1.08999 * 109.47317 * 90.00774 * 1 2 3 27 27 H 1.09004 * 109.47622 * 210.00072 * 1 2 3 28 28 H 1.08998 * 109.47515 * 329.99996 * 1 2 3 29 29 H 1.08004 * 126.12873 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.46813 * 330.00097 * 5 4 3 31 31 H 1.08995 * 109.47322 * 209.99692 * 5 4 3 32 32 H 1.00893 * 110.99780 * 296.04661 * 12 10 9 33 33 H 1.00906 * 110.99754 * 59.99985 * 12 10 9 34 34 H 1.08993 * 109.46955 * 295.00111 * 13 10 9 35 35 H 1.09000 * 109.47050 * 54.99940 * 13 10 9 36 36 H 1.08993 * 109.47839 * 299.99931 * 14 13 10 37 37 H 1.09000 * 109.47160 * 60.00369 * 14 13 10 38 38 H 0.96991 * 119.99882 * 179.97438 * 18 17 15 39 39 H 1.07996 * 125.90047 * 179.73751 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5452 -0.0013 6 6 5.1767 1.8385 1.4192 7 7 4.7749 2.8393 2.1442 8 8 5.2822 2.7907 3.2449 9 6 6.0880 1.7276 3.3258 10 6 6.9076 1.3115 4.5200 11 1 7.6495 0.5745 4.2125 12 7 7.5878 2.4866 5.0807 13 6 5.9897 0.6994 5.5802 14 6 6.8343 0.1641 6.7382 15 6 5.9303 -0.4393 7.7823 16 1 4.8605 -0.4411 7.6343 17 6 6.4690 -0.9890 8.9262 18 7 5.6802 -1.5160 9.8371 19 14 8.3195 -0.9864 9.1817 20 1 8.7198 0.2565 9.8889 21 1 8.7085 -2.1661 9.9956 22 1 9.0012 -1.0476 7.8639 23 7 6.0248 1.1126 2.1694 24 6 3.5346 -0.7321 -0.0070 25 7 2.2890 -1.1328 -0.0005 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.9281 2.1193 -0.0004 30 1 4.5439 2.4800 -0.5152 31 1 5.5818 1.0340 -0.5154 32 1 8.2480 2.8709 4.4215 33 1 6.9209 3.1850 5.3734 34 1 5.3051 1.4617 5.9518 35 1 5.4189 -0.1175 5.1388 36 1 7.5190 -0.5982 6.3667 37 1 7.4051 0.9811 7.1797 38 1 6.0593 -1.9030 10.6416 39 1 4.4053 -1.3710 -0.0129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325896468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:30 Heat of formation + Delta-G solvation = 111.340296 kcal Electronic energy + Delta-G solvation = -22285.240825 eV Core-core repulsion = 18845.665349 eV Total energy + Delta-G solvation = -3439.575475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.58576 -42.22254 -38.13698 -37.19507 -35.14534 -34.62791 -33.47398 -32.47573 -31.89878 -29.28496 -28.47924 -26.88957 -25.63640 -24.41429 -22.70788 -22.09769 -21.73651 -21.01206 -19.11902 -18.95845 -18.37213 -17.74475 -17.24530 -16.69074 -16.47074 -16.01473 -15.49397 -15.46997 -15.14899 -14.78126 -14.69663 -14.25325 -14.17683 -13.80781 -13.52281 -13.44950 -13.37542 -13.02727 -12.84059 -12.64644 -12.42434 -12.10279 -11.90444 -11.79467 -11.61183 -11.56593 -11.28877 -10.87223 -10.69696 -10.48072 -10.02771 -9.51324 -8.23323 -6.27243 0.07536 0.82360 1.18057 1.44743 1.46198 1.59278 1.62223 1.66815 1.77722 2.43943 2.69547 3.09720 3.13505 3.53254 3.56577 3.84168 3.94008 3.98995 4.21716 4.23142 4.27225 4.37514 4.46221 4.57264 4.62549 4.71313 4.76453 4.81158 4.87478 4.96195 5.09878 5.11996 5.50227 5.57439 5.66400 5.73128 5.98734 6.02866 6.33303 6.49080 6.62367 6.81389 7.12891 7.37295 8.93776 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.003406 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.152281 B = 8219.176140 C = 9204.562115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.381 5.381 3 C 0.073 3.927 4 C -0.258 4.258 5 C 0.059 3.941 6 C 0.178 3.822 7 N -0.403 5.403 8 O 0.062 5.938 9 C 0.158 3.842 10 C 0.200 3.800 11 H 0.132 0.868 12 N -0.818 5.818 13 C -0.085 4.085 14 C 0.004 3.996 15 C -0.533 4.533 16 H 0.025 0.975 17 C 0.000 4.000 18 N -0.957 5.957 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.240 1.240 23 N -0.494 5.494 24 C 0.053 3.947 25 N -0.337 5.337 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.204 0.796 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.359 0.641 33 H 0.356 0.644 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.021 0.979 37 H 0.041 0.959 38 H 0.265 0.735 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 10.238 -24.231 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.163 5.163 3 C -0.075 4.075 4 C -0.270 4.270 5 C 0.019 3.981 6 C -0.095 4.095 7 N -0.114 5.114 8 O 0.009 5.991 9 C -0.066 4.066 10 C 0.084 3.916 11 H 0.150 0.850 12 N -0.349 5.349 13 C -0.124 4.124 14 C -0.034 4.034 15 C -0.571 4.571 16 H 0.043 0.957 17 C -0.196 4.196 18 N -0.598 5.598 19 Si 0.779 3.221 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.163 1.163 23 N -0.228 5.228 24 C -0.132 4.132 25 N -0.159 5.159 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.221 0.779 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.174 0.826 33 H 0.171 0.829 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.954 8.960 -24.092 26.007 hybrid contribution 0.226 0.693 0.117 0.738 sum -3.728 9.653 -23.976 26.113 Atomic orbital electron populations 1.22209 0.71973 1.05702 1.04945 1.48855 1.08093 1.03451 1.55866 1.22882 0.90593 0.94567 0.99470 1.19863 0.94371 0.93620 1.19182 1.18264 0.95240 1.00621 0.83931 1.26489 0.93505 0.88199 1.01333 1.74545 1.19767 1.24074 0.93031 1.85227 1.44544 1.42007 1.27354 1.30902 0.92641 0.84881 0.98165 1.20412 0.92540 0.95027 0.83584 0.85003 1.58819 1.21170 1.10930 1.44005 1.21388 0.97244 0.99093 0.94721 1.19356 0.95122 0.96252 0.92624 1.21554 0.93819 1.37797 1.03965 0.95708 1.26060 1.03894 0.94273 0.95326 1.70089 1.37800 1.41446 1.10467 0.85569 0.79168 0.77775 0.79568 1.19036 1.21654 1.16297 1.71913 1.20314 1.28012 1.02582 1.24150 0.95404 0.95316 0.98377 1.77344 1.02535 1.09883 1.26161 0.88709 0.89623 0.87067 0.77939 0.86319 0.86409 0.82561 0.82920 0.92480 0.93359 0.96019 0.94069 0.92659 0.78958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 11.47 127.77 1.47 2.53 16 2 N -0.38 -7.89 4.01 -369.58 -1.48 -9.38 16 3 C 0.07 1.34 11.40 83.54 0.95 2.30 16 4 C -0.26 -5.39 5.34 -20.14 -0.11 -5.50 16 5 C 0.06 1.06 6.33 29.10 0.18 1.25 16 6 C 0.18 4.59 7.45 138.46 1.03 5.62 16 7 N -0.40 -11.25 12.16 -60.31 -0.73 -11.99 16 8 O 0.06 1.79 11.30 74.81 0.84 2.64 16 9 C 0.16 4.48 7.31 88.38 0.65 5.13 16 10 C 0.20 5.64 3.29 44.17 0.15 5.78 16 11 H 0.13 3.57 8.14 -2.39 -0.02 3.55 16 12 N -0.82 -19.36 8.68 -171.79 -1.49 -20.85 16 13 C -0.09 -3.21 4.78 30.60 0.15 -3.07 16 14 C 0.00 0.18 3.93 29.85 0.12 0.30 16 15 C -0.53 -30.93 9.66 25.60 0.25 -30.68 16 16 H 0.02 1.60 7.99 -2.91 -0.02 1.57 16 17 C 0.00 0.03 5.47 84.65 0.46 0.49 16 18 N -0.96 -61.04 13.96 21.45 0.30 -60.74 16 19 Si 0.96 44.42 27.47 68.60 1.88 46.30 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 23 N -0.49 -14.31 11.55 -303.19 -3.50 -17.81 16 24 C 0.05 1.28 11.96 85.23 1.02 2.30 16 25 N -0.34 -9.05 12.58 -57.02 -0.72 -9.77 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 30 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.36 6.46 9.06 -89.70 -0.81 5.65 16 33 H 0.36 7.94 8.98 -89.69 -0.81 7.14 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 36 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 37 H 0.04 1.80 7.18 -2.39 -0.02 1.78 16 38 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.19 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -77.59 340.80 0.83 -76.76 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.58 Total: 18.38 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 6.31 Total: -13.56 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -7.63 Total: -130.52 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.84 Total: 2.64 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -77.59 0.83 -76.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325896468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.101 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds