Wall clock time and date at job start Tue Mar 31 2020 07:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34950 * 126.04069 * 2 1 4 4 C 1.35309 * 107.75146 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.04281 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47198 * 90.00128 * 5 4 3 7 7 N 1.29948 * 126.28506 * 90.02426 * 6 5 4 8 8 O 1.21303 * 110.24669 * 179.97438 * 7 6 5 9 9 C 1.33643 * 109.81437 * 0.02562 * 8 7 6 10 10 C 1.50690 * 126.55005 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47227 * 165.02847 * 10 9 8 12 12 N 1.46902 * 109.47505 * 45.02631 * 10 9 8 13 13 C 1.52999 * 109.47278 * 285.02411 * 10 9 8 14 14 C 1.52997 * 109.47330 * 185.00229 * 13 10 9 15 15 C 1.50701 * 109.47395 * 179.97438 * 14 13 10 16 16 H 1.07998 * 119.99737 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00104 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99927 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47260 * 60.00126 * 19 17 15 21 21 H 1.48497 * 109.47080 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47061 * 300.00317 * 19 17 15 23 23 N 1.31126 * 106.89467 * 0.02562 * 9 8 7 24 24 C 1.39874 * 107.91951 * 0.26669 * 4 3 2 25 25 N 1.30835 * 108.20129 * 359.55604 * 24 4 3 26 26 H 1.09000 * 109.47527 * 89.99689 * 1 2 3 27 27 H 1.09000 * 109.47045 * 209.99559 * 1 2 3 28 28 H 1.09000 * 109.47028 * 329.99280 * 1 2 3 29 29 H 1.08004 * 126.12207 * 0.04956 * 3 2 1 30 30 H 1.08998 * 109.47123 * 330.00075 * 5 4 3 31 31 H 1.09003 * 109.47140 * 210.00413 * 5 4 3 32 32 H 1.00903 * 110.99611 * 299.99959 * 12 10 9 33 33 H 1.00897 * 110.99710 * 63.95060 * 12 10 9 34 34 H 1.09006 * 109.47103 * 304.99921 * 13 10 9 35 35 H 1.09001 * 109.47358 * 64.99776 * 13 10 9 36 36 H 1.09001 * 109.47074 * 300.00267 * 14 13 10 37 37 H 1.08999 * 109.47319 * 60.00034 * 14 13 10 38 38 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 39 39 H 1.07995 * 125.90225 * 179.73365 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5453 -0.0002 6 6 5.1764 1.8372 1.4207 7 7 5.9959 1.1354 2.1449 8 8 6.1168 1.6337 3.2443 9 6 5.3625 2.7337 3.3284 10 6 5.2300 3.6416 4.5238 11 1 4.7685 4.5805 4.2176 12 7 6.5608 3.9103 5.0848 13 6 4.3569 2.9660 5.5831 14 6 4.1194 3.9357 6.7425 15 6 3.2589 3.2704 7.7856 16 1 2.9162 2.2572 7.6367 17 6 2.9101 3.9550 8.9305 18 7 3.3279 5.1887 9.1120 19 14 1.8441 3.1301 10.2238 20 1 2.5301 1.9135 10.7282 21 1 1.6135 4.0713 11.3490 22 1 0.5408 2.7498 9.6220 23 7 4.7590 2.8713 2.1725 24 6 3.5346 -0.7321 -0.0071 25 7 2.2892 -1.1328 -0.0008 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.9281 2.1193 0.0008 30 1 4.5441 2.4805 -0.5134 31 1 5.5819 1.0345 -0.5147 32 1 7.0096 3.0549 5.3764 33 1 7.1358 4.4140 4.4262 34 1 3.4004 2.6866 5.1414 35 1 4.8606 2.0731 5.9536 36 1 5.0759 4.2151 7.1842 37 1 3.6156 4.8285 6.3720 38 1 3.0822 5.6704 9.9173 39 1 4.4053 -1.3710 -0.0132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325896471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:34 Heat of formation + Delta-G solvation = 135.326319 kcal Electronic energy + Delta-G solvation = -22273.069799 eV Core-core repulsion = 18834.534435 eV Total energy + Delta-G solvation = -3438.535363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 4.38 seconds Orbital eigenvalues (eV) -45.41162 -41.40887 -36.69225 -36.08688 -33.89764 -33.10796 -32.33068 -31.02826 -30.26869 -28.47551 -26.51637 -26.09754 -24.12671 -23.23665 -21.50462 -21.24135 -20.52950 -19.81280 -17.90501 -17.44607 -16.88165 -16.27680 -15.94100 -15.73067 -15.19895 -14.70617 -14.40744 -14.20232 -14.02508 -13.93312 -13.47748 -12.85155 -12.82532 -12.55574 -12.45176 -12.17977 -12.06835 -11.73738 -11.39363 -10.96587 -10.89324 -10.80823 -10.69235 -10.58252 -9.97340 -9.82244 -9.64910 -9.36133 -9.04335 -8.81366 -8.68273 -8.28408 -5.95622 -3.97803 1.28183 1.64837 2.21822 2.36242 2.58481 2.99106 3.35584 3.40075 3.42656 3.79467 4.13414 4.28067 4.49114 4.62449 4.72892 4.84765 4.87166 4.92155 5.11947 5.14015 5.27327 5.39908 5.40319 5.44141 5.57248 5.74353 5.85414 5.90104 6.10071 6.39151 6.40861 6.57830 6.74187 7.00777 7.18022 7.45126 7.52841 7.73770 7.91905 8.08759 8.31079 8.45477 9.09296 9.65440 11.15284 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.003575 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.785786 B = 7830.732671 C = 9244.198582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.376 5.376 3 C 0.078 3.922 4 C -0.244 4.244 5 C 0.056 3.944 6 C 0.173 3.827 7 N -0.390 5.390 8 O 0.070 5.930 9 C 0.159 3.841 10 C 0.186 3.814 11 H 0.124 0.876 12 N -0.813 5.813 13 C -0.101 4.101 14 C 0.032 3.968 15 C -0.524 4.524 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 N -0.485 5.485 24 C 0.062 3.938 25 N -0.298 5.298 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.178 0.822 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.349 0.651 33 H 0.340 0.660 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 -6.126 -20.698 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.157 5.157 3 C -0.069 4.069 4 C -0.257 4.257 5 C 0.016 3.984 6 C -0.100 4.100 7 N -0.099 5.099 8 O 0.014 5.986 9 C -0.064 4.064 10 C 0.071 3.929 11 H 0.141 0.859 12 N -0.341 5.341 13 C -0.140 4.140 14 C -0.005 4.005 15 C -0.562 4.562 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 N -0.219 5.219 24 C -0.125 4.125 25 N -0.119 5.119 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.195 0.805 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.474 -7.092 -20.581 21.774 hybrid contribution 0.173 -0.274 0.134 0.350 sum -0.301 -7.366 -20.447 21.736 Atomic orbital electron populations 1.21898 0.73924 1.04881 1.03360 1.48490 1.06822 1.03835 1.56565 1.22417 0.90714 0.93623 1.00177 1.19686 0.93716 0.93785 1.18515 1.18046 0.94853 0.99660 0.85831 1.25837 0.94530 0.89405 1.00264 1.74564 1.21491 1.20866 0.93001 1.85246 1.53142 1.33058 1.27178 1.31151 0.88494 0.88634 0.98160 1.20805 0.93029 0.94471 0.84607 0.85874 1.58823 1.03932 1.27777 1.43604 1.21830 0.96492 1.00115 0.95568 1.19011 0.97824 0.93174 0.90467 1.21210 1.31600 0.99784 1.03626 0.93020 1.24969 0.96227 0.94878 0.98115 1.69956 1.45520 1.10322 1.27326 0.86711 0.80990 0.79287 0.81304 1.20277 1.21282 1.20401 1.71874 1.24491 1.23301 1.02196 1.23805 0.95293 0.94353 0.99031 1.77374 1.01585 1.08295 1.24681 0.90645 0.89190 0.89176 0.80525 0.88229 0.88486 0.83700 0.84735 0.92489 0.92472 0.94436 0.96605 0.92992 0.80018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.47 59.84 0.69 1.38 16 2 N -0.38 -4.17 4.01 -68.17 -0.27 -4.45 16 3 C 0.08 0.83 11.40 -17.22 -0.20 0.63 16 4 C -0.24 -2.78 5.33 -105.06 -0.56 -3.34 16 5 C 0.06 0.58 6.33 -29.03 -0.18 0.40 16 6 C 0.17 2.46 7.45 -156.37 -1.17 1.29 16 7 N -0.39 -6.04 12.16 30.90 0.38 -5.67 16 8 O 0.07 1.10 11.29 18.10 0.20 1.30 16 9 C 0.16 2.46 7.31 -13.06 -0.10 2.37 16 10 C 0.19 2.96 3.29 -68.87 -0.23 2.73 16 11 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 12 N -0.81 -11.60 8.68 -5.66 -0.05 -11.65 16 13 C -0.10 -1.99 4.78 -26.73 -0.13 -2.12 16 14 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 15 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 N -0.48 -7.52 11.55 -9.87 -0.11 -7.64 16 24 C 0.06 0.74 11.96 -17.36 -0.21 0.53 16 25 N -0.30 -3.95 12.58 30.62 0.39 -3.56 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.35 4.66 8.98 -39.29 -0.35 4.31 16 33 H 0.34 3.96 9.06 -39.29 -0.36 3.60 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.99 7.75 -51.93 -0.40 0.58 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -34.16 344.40 -6.49 -40.66 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.30 Total: 3.84 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.62 Total: -8.82 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 1.06 Total: -58.76 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.16 -6.49 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325896471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.982 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.38 seconds