Wall clock time and date at job start Tue Mar 31 2020 07:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00066 * 2 1 4 4 C 1.53006 * 109.46956 * 66.04419 * 3 2 1 5 5 C 1.52995 * 109.47232 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47029 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00128 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99612 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99566 * 180.02562 * 8 6 5 10 10 Si 1.86791 * 120.00363 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47265 * 89.99925 * 10 8 6 12 12 H 1.48495 * 109.47404 * 210.00208 * 10 8 6 13 13 H 1.48505 * 109.47225 * 329.99974 * 10 8 6 14 14 C 1.46905 * 111.00138 * 236.05008 * 2 1 3 15 15 C 1.50703 * 109.46682 * 293.95343 * 14 2 1 16 16 N 1.31253 * 126.20153 * 90.02798 * 15 14 2 17 17 N 1.28814 * 110.03967 * 179.97438 * 16 15 14 18 18 C 1.31387 * 109.25736 * 359.97438 * 17 16 15 19 19 C 1.46889 * 134.26558 * 180.02562 * 18 17 16 20 20 O 1.21744 * 120.78517 * 0.02562 * 19 18 17 21 21 N 1.35149 * 118.43196 * 179.97438 * 19 18 17 22 22 H 0.97004 * 119.85957 * 180.02562 * 21 19 18 23 23 C 1.38152 * 120.28959 * 0.02562 * 21 19 18 24 24 C 1.32818 * 121.84291 * 359.97438 * 23 21 19 25 25 N 1.34482 * 126.19809 * 269.97784 * 15 14 2 26 26 H 1.09002 * 109.46981 * 183.95106 * 1 2 3 27 27 H 1.08992 * 109.47196 * 303.95159 * 1 2 3 28 28 H 1.09004 * 109.47065 * 63.95512 * 1 2 3 29 29 H 1.08998 * 109.47331 * 186.04474 * 3 2 1 30 30 H 1.09000 * 109.47139 * 306.05033 * 3 2 1 31 31 H 1.08998 * 109.47026 * 300.00711 * 4 3 2 32 32 H 1.09000 * 109.46696 * 60.00342 * 4 3 2 33 33 H 1.08998 * 109.47339 * 300.00228 * 5 4 3 34 34 H 1.09000 * 109.46856 * 60.00618 * 5 4 3 35 35 H 0.96998 * 119.99749 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47194 * 173.95496 * 14 2 1 37 37 H 1.09001 * 109.47226 * 53.94967 * 14 2 1 38 38 H 1.07996 * 119.08032 * 180.02562 * 23 21 19 39 39 H 1.07996 * 119.45429 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1802 3.4856 1.3186 6 6 1.8211 4.1614 2.6168 7 1 1.2581 3.6257 3.3668 8 6 2.2113 5.4637 2.8470 9 7 1.8983 6.0533 3.9802 10 14 3.1845 6.3904 1.5496 11 1 2.2478 7.0944 0.6372 12 1 4.0711 7.3817 2.2100 13 1 4.0081 5.4317 0.7699 14 6 1.9955 -0.7659 -1.1377 15 6 1.6370 -2.2204 -0.9729 16 7 0.5491 -2.8057 -1.4165 17 7 0.5609 -4.0550 -1.1029 18 6 1.6634 -4.3254 -0.4415 19 6 2.2258 -5.5415 0.1606 20 8 1.6292 -6.6009 0.0981 21 7 3.4216 -5.4569 0.7845 22 1 3.8123 -6.2473 1.1890 23 6 4.0901 -4.2496 0.8489 24 6 3.5921 -3.1432 0.3086 25 7 2.3741 -3.1540 -0.3456 26 1 -0.3633 -1.0252 0.0708 27 1 -0.3633 0.5739 0.8524 28 1 -0.3633 0.4512 -0.9233 29 1 3.0797 1.3444 -0.1082 30 1 1.5611 1.9274 -0.8309 31 1 0.5472 2.0843 1.4265 32 1 2.0658 1.5015 2.1492 33 1 3.2645 3.4582 1.2106 34 1 1.7462 4.0417 0.4877 35 1 2.1725 6.9696 4.1420 36 1 3.0798 -0.6610 -1.1757 37 1 1.5611 -0.3872 -2.0629 38 1 5.0446 -4.2043 1.3520 39 1 4.1473 -2.2198 0.3821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331181430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:00 Heat of formation + Delta-G solvation = 75.183646 kcal Electronic energy + Delta-G solvation = -22480.058561 eV Core-core repulsion = 19038.915215 eV Total energy + Delta-G solvation = -3441.143345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.98511 -40.52589 -37.91592 -37.83195 -34.82334 -33.95766 -32.21498 -31.08132 -30.51288 -27.86749 -27.49161 -25.41685 -24.73858 -24.02828 -21.88633 -21.02859 -20.03256 -19.41491 -19.11888 -18.23665 -17.31625 -16.75535 -16.16304 -15.75971 -15.46134 -15.26726 -14.89924 -14.58726 -14.16005 -13.95516 -13.85187 -13.13529 -12.99012 -12.69684 -12.30135 -12.09179 -11.98312 -11.79105 -11.68471 -11.43451 -11.17527 -11.02820 -10.93271 -10.76759 -10.03994 -9.84537 -9.74847 -9.62326 -9.22305 -8.74886 -8.57310 -8.42764 -6.07375 -4.05638 0.44999 0.88373 1.84486 2.00369 2.23389 2.81730 3.27017 3.34615 3.36602 3.41293 3.65622 3.97855 4.19248 4.28750 4.41390 4.43457 4.87868 4.94099 5.14551 5.25514 5.29375 5.37651 5.49649 5.50679 5.69065 5.75398 5.83586 6.00215 6.03487 6.11386 6.41231 6.44347 6.48443 6.78341 6.96290 7.03475 7.14325 7.27928 7.38566 7.76083 8.11466 8.51148 8.98151 9.54808 11.06205 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.002916 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.477099 B = 9599.834197 C = 9979.541403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.539 5.539 3 C 0.054 3.946 4 C -0.097 4.097 5 C -0.012 4.012 6 C -0.520 4.520 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.881 3.119 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.132 3.868 15 C 0.223 3.777 16 N -0.273 5.273 17 N -0.206 5.206 18 C 0.097 3.903 19 C 0.600 3.400 20 O -0.485 6.485 21 N -0.639 5.639 22 H 0.429 0.571 23 C 0.086 3.914 24 C -0.017 4.017 25 N -0.379 5.379 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.015 0.985 34 H 0.010 0.990 35 H 0.263 0.737 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.190 0.810 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.617 -20.262 -9.163 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.072 4.072 4 C -0.135 4.135 5 C -0.050 4.050 6 C -0.558 4.558 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.543 5.543 10 Si 0.709 3.291 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.190 1.190 14 C 0.002 3.998 15 C -0.042 4.042 16 N -0.117 5.117 17 N -0.052 5.052 18 C -0.165 4.165 19 C 0.386 3.614 20 O -0.354 6.354 21 N -0.283 5.283 22 H 0.269 0.731 23 C -0.035 4.035 24 C -0.135 4.135 25 N -0.065 5.065 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.207 0.793 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.992 -21.017 -9.439 24.076 hybrid contribution 1.639 1.003 -0.423 1.967 sum 8.631 -20.014 -9.862 23.923 Atomic orbital electron populations 1.22505 0.86334 1.02393 1.01622 1.62086 1.09232 1.15422 1.39710 1.22386 0.99551 0.85493 0.99794 1.21491 1.00850 0.96896 0.94295 1.19544 0.95982 0.91960 0.97529 1.21133 1.35562 0.97882 1.01223 0.91045 1.25053 0.95676 0.97541 0.95325 1.69922 1.46972 1.13247 1.24149 0.86763 0.80529 0.79794 0.82063 1.20339 1.21434 1.19047 1.20537 1.01342 0.82752 0.95190 1.24810 0.89329 0.94535 0.95545 1.74853 1.16594 0.99435 1.20820 1.74621 1.13840 1.07199 1.09549 1.24515 0.94685 0.88192 1.09147 1.16473 0.80633 0.86005 0.78322 1.90994 1.58915 1.28448 1.57044 1.43382 1.19358 1.12285 1.53246 0.73069 1.21422 0.98857 0.83282 0.99970 1.21088 0.87484 1.01208 1.03751 1.43521 1.16312 1.09139 1.37546 0.91610 0.90111 0.94927 0.90952 0.94543 0.92578 0.91975 0.96647 0.97208 0.92734 0.88355 0.90413 0.79269 0.79655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.17 60.07 0.55 0.81 16 2 N -0.54 -6.84 4.75 -244.36 -1.16 -8.00 16 3 C 0.05 0.76 4.96 -3.82 -0.02 0.74 16 4 C -0.10 -1.78 5.08 -26.73 -0.14 -1.92 16 5 C -0.01 -0.28 4.04 -27.89 -0.11 -0.39 16 6 C -0.52 -14.46 9.66 -34.44 -0.33 -14.80 16 7 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 8 C 0.07 1.86 5.47 -17.81 -0.10 1.76 16 9 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 10 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 14 C 0.13 1.35 5.49 -4.97 -0.03 1.32 16 15 C 0.22 2.69 6.73 -155.29 -1.05 1.64 16 16 N -0.27 -4.04 11.52 32.73 0.38 -3.67 16 17 N -0.21 -3.24 12.29 32.34 0.40 -2.84 16 18 C 0.10 1.26 8.12 -154.30 -1.25 0.01 16 19 C 0.60 6.61 7.97 -12.59 -0.10 6.51 16 20 O -0.48 -6.86 17.99 5.15 0.09 -6.77 16 21 N -0.64 -3.56 5.38 -13.15 -0.07 -3.63 16 22 H 0.43 1.10 8.92 -40.82 -0.36 0.74 16 23 C 0.09 0.30 11.09 -16.56 -0.18 0.11 16 24 C -0.02 -0.10 10.87 -16.52 -0.18 -0.28 16 25 N -0.38 -4.01 2.97 -58.39 -0.17 -4.19 16 26 H 0.07 0.93 6.74 -51.93 -0.35 0.58 16 27 H 0.08 1.15 6.30 -51.93 -0.33 0.82 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 30 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.06 1.06 6.47 -51.93 -0.34 0.72 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.34 7.20 -51.93 -0.37 -0.03 16 34 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.10 0.74 7.93 -51.93 -0.41 0.33 16 37 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.19 -0.24 8.06 -52.49 -0.42 -0.66 16 39 H 0.19 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -36.64 329.74 -7.49 -44.13 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -5.09 Total: -5.19 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.94 Total: -4.48 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.14 Total: -49.11 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: 0.09 Total: -6.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.64 -7.49 -44.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331181430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.317 kcal (2) G-P(sol) polarization free energy of solvation -36.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds