Wall clock time and date at job start Tue Mar 31 2020 07:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00066 * 2 1 4 4 C 1.53006 * 109.46956 * 66.04419 * 3 2 1 5 5 C 1.52995 * 109.47232 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47029 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00128 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99612 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99566 * 180.02562 * 8 6 5 10 10 Si 1.86791 * 120.00363 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47265 * 89.99925 * 10 8 6 12 12 H 1.48495 * 109.47404 * 210.00208 * 10 8 6 13 13 H 1.48505 * 109.47225 * 329.99974 * 10 8 6 14 14 C 1.46905 * 111.00138 * 236.05008 * 2 1 3 15 15 C 1.50703 * 109.46682 * 293.95343 * 14 2 1 16 16 N 1.31253 * 126.20153 * 90.02798 * 15 14 2 17 17 N 1.28814 * 110.03967 * 179.97438 * 16 15 14 18 18 C 1.31387 * 109.25736 * 359.97438 * 17 16 15 19 19 C 1.46889 * 134.26558 * 180.02562 * 18 17 16 20 20 O 1.21744 * 120.78517 * 0.02562 * 19 18 17 21 21 N 1.35149 * 118.43196 * 179.97438 * 19 18 17 22 22 H 0.97004 * 119.85957 * 180.02562 * 21 19 18 23 23 C 1.38152 * 120.28959 * 0.02562 * 21 19 18 24 24 C 1.32818 * 121.84291 * 359.97438 * 23 21 19 25 25 N 1.34482 * 126.19809 * 269.97784 * 15 14 2 26 26 H 1.09002 * 109.46981 * 183.95106 * 1 2 3 27 27 H 1.08992 * 109.47196 * 303.95159 * 1 2 3 28 28 H 1.09004 * 109.47065 * 63.95512 * 1 2 3 29 29 H 1.08998 * 109.47331 * 186.04474 * 3 2 1 30 30 H 1.09000 * 109.47139 * 306.05033 * 3 2 1 31 31 H 1.08998 * 109.47026 * 300.00711 * 4 3 2 32 32 H 1.09000 * 109.46696 * 60.00342 * 4 3 2 33 33 H 1.08998 * 109.47339 * 300.00228 * 5 4 3 34 34 H 1.09000 * 109.46856 * 60.00618 * 5 4 3 35 35 H 0.96998 * 119.99749 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47194 * 173.95496 * 14 2 1 37 37 H 1.09001 * 109.47226 * 53.94967 * 14 2 1 38 38 H 1.07996 * 119.08032 * 180.02562 * 23 21 19 39 39 H 1.07996 * 119.45429 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1802 3.4856 1.3186 6 6 1.8211 4.1614 2.6168 7 1 1.2581 3.6257 3.3668 8 6 2.2113 5.4637 2.8470 9 7 1.8983 6.0533 3.9802 10 14 3.1845 6.3904 1.5496 11 1 2.2478 7.0944 0.6372 12 1 4.0711 7.3817 2.2100 13 1 4.0081 5.4317 0.7699 14 6 1.9955 -0.7659 -1.1377 15 6 1.6370 -2.2204 -0.9729 16 7 0.5491 -2.8057 -1.4165 17 7 0.5609 -4.0550 -1.1029 18 6 1.6634 -4.3254 -0.4415 19 6 2.2258 -5.5415 0.1606 20 8 1.6292 -6.6009 0.0981 21 7 3.4216 -5.4569 0.7845 22 1 3.8123 -6.2473 1.1890 23 6 4.0901 -4.2496 0.8489 24 6 3.5921 -3.1432 0.3086 25 7 2.3741 -3.1540 -0.3456 26 1 -0.3633 -1.0252 0.0708 27 1 -0.3633 0.5739 0.8524 28 1 -0.3633 0.4512 -0.9233 29 1 3.0797 1.3444 -0.1082 30 1 1.5611 1.9274 -0.8309 31 1 0.5472 2.0843 1.4265 32 1 2.0658 1.5015 2.1492 33 1 3.2645 3.4582 1.2106 34 1 1.7462 4.0417 0.4877 35 1 2.1725 6.9696 4.1420 36 1 3.0798 -0.6610 -1.1757 37 1 1.5611 -0.3872 -2.0629 38 1 5.0446 -4.2043 1.3520 39 1 4.1473 -2.2198 0.3821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331181430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:00 Heat of formation + Delta-G solvation = 47.157150 kcal Electronic energy + Delta-G solvation = -22481.273881 eV Core-core repulsion = 19038.915215 eV Total energy + Delta-G solvation = -3442.358665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.82364 -41.27770 -38.94214 -38.60195 -35.78855 -35.47474 -33.82550 -32.35555 -31.10362 -29.13933 -28.68292 -26.37077 -25.84757 -24.92450 -23.22441 -21.95322 -21.50054 -20.12605 -19.84326 -18.91443 -18.82189 -18.14879 -16.95304 -16.77792 -16.49617 -16.26176 -16.11066 -15.71641 -15.16496 -15.07566 -14.69893 -14.61606 -13.89070 -13.81702 -13.65461 -13.40855 -13.12430 -13.00803 -12.71873 -12.61634 -12.41200 -12.27150 -12.02329 -11.85167 -11.75158 -11.52820 -11.36794 -11.18780 -10.74617 -10.71740 -9.44258 -9.26761 -8.25150 -6.29659 -0.29426 0.19888 1.11295 1.36234 1.41124 1.41976 1.42814 1.54845 2.05520 2.40873 2.71704 2.91611 3.10853 3.14157 3.44958 3.63812 4.05352 4.10501 4.16961 4.31282 4.41227 4.45605 4.56600 4.63200 4.67200 4.75654 4.91775 4.93145 5.01050 5.03902 5.17834 5.28518 5.47257 5.58479 5.65457 5.71789 5.82931 5.92628 6.01233 6.34612 6.49580 6.79996 7.20488 7.35107 8.92142 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.002916 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.477099 B = 9599.834197 C = 9979.541403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.067 3.933 4 C -0.090 4.090 5 C -0.009 4.009 6 C -0.533 4.533 7 H 0.025 0.975 8 C -0.002 4.002 9 N -0.957 5.957 10 Si 0.956 3.044 11 H -0.270 1.270 12 H -0.288 1.288 13 H -0.234 1.234 14 C 0.137 3.863 15 C 0.216 3.784 16 N -0.305 5.305 17 N -0.259 5.259 18 C 0.081 3.919 19 C 0.595 3.405 20 O -0.529 6.529 21 N -0.614 5.614 22 H 0.447 0.553 23 C 0.117 3.883 24 C -0.055 4.055 25 N -0.367 5.367 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.018 0.982 35 H 0.265 0.735 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.252 0.748 39 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.478 -20.250 -10.549 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.059 4.059 4 C -0.128 4.128 5 C -0.047 4.047 6 C -0.571 4.571 7 H 0.043 0.957 8 C -0.198 4.198 9 N -0.599 5.599 10 Si 0.779 3.221 11 H -0.196 1.196 12 H -0.214 1.214 13 H -0.157 1.157 14 C 0.008 3.992 15 C -0.051 4.051 16 N -0.150 5.150 17 N -0.106 5.106 18 C -0.183 4.183 19 C 0.380 3.620 20 O -0.403 6.403 21 N -0.259 5.259 22 H 0.291 0.709 23 C -0.003 4.003 24 C -0.172 4.172 25 N -0.051 5.051 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.154 0.846 37 H 0.103 0.897 38 H 0.268 0.732 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 10.903 -21.028 -10.814 26.038 hybrid contribution 0.478 0.928 0.175 1.058 sum 11.382 -20.100 -10.638 25.431 Atomic orbital electron populations 1.22377 0.87361 1.01339 1.01217 1.61943 1.08411 1.15014 1.41491 1.22159 1.01209 0.85678 0.96888 1.21303 0.99555 0.95088 0.96863 1.19488 0.96901 0.93810 0.94487 1.21560 1.34649 0.98206 1.02667 0.95695 1.26133 0.97074 0.98751 0.97873 1.70101 1.48984 1.13858 1.26913 0.85575 0.79083 0.78532 0.78921 1.19575 1.21424 1.15720 1.20687 1.03388 0.80964 0.94185 1.25033 0.89035 0.95314 0.95695 1.74705 1.18508 0.99544 1.22203 1.74485 1.16095 1.08036 1.11966 1.24829 0.94653 0.89752 1.09044 1.16542 0.81913 0.84839 0.78662 1.90964 1.60608 1.29586 1.59128 1.43359 1.17341 1.14149 1.51018 0.70933 1.22447 0.99552 0.81111 0.97237 1.21953 0.86450 1.03774 1.04992 1.43711 1.17116 1.07742 1.36535 0.92809 0.91685 0.94300 0.88151 0.93814 0.94235 0.93096 0.95161 0.96346 0.92640 0.84611 0.89746 0.73210 0.76534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.17 127.69 1.17 1.84 16 2 N -0.54 -12.52 4.75 -927.02 -4.41 -16.92 16 3 C 0.07 1.65 4.96 86.31 0.43 2.08 16 4 C -0.09 -3.18 5.08 30.59 0.16 -3.02 16 5 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 6 C -0.53 -30.03 9.66 25.60 0.25 -29.78 16 7 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 8 C 0.00 -0.14 5.47 84.65 0.46 0.33 16 9 N -0.96 -59.82 13.96 21.45 0.30 -59.52 16 10 Si 0.96 42.36 27.47 68.60 1.88 44.24 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.23 -9.14 6.54 99.48 0.65 -8.48 16 14 C 0.14 2.39 5.49 85.56 0.47 2.86 16 15 C 0.22 4.95 6.73 138.09 0.93 5.88 16 16 N -0.31 -9.30 11.52 -50.37 -0.58 -9.88 16 17 N -0.26 -8.57 12.29 -51.59 -0.63 -9.20 16 18 C 0.08 2.11 8.12 135.97 1.10 3.21 16 19 C 0.59 12.78 7.97 86.45 0.69 13.47 16 20 O -0.53 -15.42 17.99 -4.49 -0.08 -15.51 16 21 N -0.61 -4.95 5.38 -313.50 -1.69 -6.63 16 22 H 0.45 0.72 8.92 -92.71 -0.83 -0.11 16 23 C 0.12 0.22 11.09 82.52 0.92 1.14 16 24 C -0.06 -0.45 10.87 82.50 0.90 0.45 16 25 N -0.37 -7.12 2.97 -338.66 -1.01 -8.13 16 26 H 0.05 1.56 6.74 -2.39 -0.02 1.54 16 27 H 0.06 1.89 6.30 -2.39 -0.02 1.88 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.95 7.93 -2.39 -0.02 1.94 16 30 H 0.04 1.04 8.12 -2.39 -0.02 1.02 16 31 H 0.04 1.50 6.47 -2.39 -0.02 1.48 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 34 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.14 1.34 7.93 -2.39 -0.02 1.32 16 37 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 38 H 0.25 -2.57 8.06 -2.91 -0.02 -2.59 16 39 H 0.22 0.31 8.06 -2.91 -0.02 0.29 16 Total: -1.00 -87.24 329.74 1.58 -85.66 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: 0.20 Total: -2.30 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 7.59 Total: -1.82 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -8.01 Total: -110.29 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.08 Total: -15.51 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.88 Total: 44.24 kcal Total: -87.24 1.58 -85.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331181430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.821 kcal (2) G-P(sol) polarization free energy of solvation -87.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds