Wall clock time and date at job start Tue Mar 31 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 H 1.08996 * 109.46930 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47629 * 300.05345 * 3 2 1 6 6 H 1.07990 * 119.99969 * 119.99701 * 5 3 2 7 7 C 1.37879 * 119.99370 * 299.99845 * 5 3 2 8 8 N 1.31513 * 120.00415 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99332 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46869 * 90.00188 * 9 7 5 11 11 H 1.48504 * 109.46680 * 209.99852 * 9 7 5 12 12 H 1.48491 * 109.47228 * 329.99631 * 9 7 5 13 13 N 1.46904 * 109.46753 * 60.05124 * 3 2 1 14 14 C 1.46904 * 111.00097 * 85.93858 * 13 3 2 15 15 C 1.50700 * 109.47231 * 175.53245 * 14 13 3 16 16 N 1.31265 * 126.19957 * 269.99906 * 15 14 13 17 17 N 1.28797 * 110.03735 * 179.97438 * 16 15 14 18 18 C 1.31394 * 109.26246 * 0.02562 * 17 16 15 19 19 C 1.46889 * 134.26958 * 180.02562 * 18 17 16 20 20 O 1.21739 * 120.78627 * 359.97438 * 19 18 17 21 21 N 1.35147 * 118.42942 * 179.97438 * 19 18 17 22 22 C 1.46510 * 119.85579 * 179.97438 * 21 19 18 23 23 C 1.38157 * 120.29347 * 0.25747 * 21 19 18 24 24 C 1.32807 * 121.83793 * 359.48509 * 23 21 19 25 25 N 1.34471 * 126.19866 * 90.00328 * 15 14 13 26 26 H 1.08998 * 109.46932 * 295.59870 * 1 2 3 27 27 H 1.08997 * 109.47396 * 55.59583 * 1 2 3 28 28 H 1.09002 * 109.47180 * 175.59925 * 1 2 3 29 29 H 1.08998 * 109.46620 * 240.00650 * 2 1 3 30 30 H 1.08998 * 109.46789 * 120.00752 * 2 1 3 31 31 H 0.97001 * 120.00068 * 180.02562 * 8 7 5 32 32 H 1.00899 * 111.00018 * 209.88827 * 13 3 2 33 33 H 1.09001 * 109.46667 * 55.53251 * 14 13 3 34 34 H 1.09002 * 109.46969 * 295.53619 * 14 13 3 35 35 H 1.08995 * 109.46716 * 90.00090 * 22 21 19 36 36 H 1.09003 * 109.46583 * 329.99946 * 22 21 19 37 37 H 1.08996 * 109.47172 * 209.99941 * 22 21 19 38 38 H 1.07998 * 119.07748 * 179.72674 * 23 21 19 39 39 H 1.08004 * 119.45982 * 180.27280 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 -0.0005 5 6 1.5367 2.1534 -1.2298 6 1 0.9159 3.0314 -1.1298 7 6 1.8688 1.6827 -2.4824 8 7 2.6243 0.6131 -2.6041 9 14 1.2454 2.5643 -4.0068 10 1 2.2237 3.6057 -4.4111 11 1 1.0793 1.5857 -5.1114 12 1 -0.0622 3.2022 -3.7098 13 7 1.5513 2.1346 1.2001 14 6 2.4479 1.9065 2.3412 15 6 1.9763 2.7175 3.5206 16 7 2.3399 3.9444 3.8129 17 7 1.7472 4.3363 4.8871 18 6 0.9743 3.3714 5.3323 19 6 0.0743 3.2276 6.4842 20 8 -0.0727 4.1390 7.2778 21 7 -0.5868 2.0594 6.6423 22 6 -1.4919 1.8819 7.7806 23 6 -0.4084 1.0299 5.7385 24 6 0.3987 1.1496 4.6906 25 7 1.1069 2.3152 4.4643 26 1 -0.3633 0.4440 0.9268 27 1 -0.3634 0.5806 -0.8479 28 1 -0.3633 -1.0246 -0.0789 29 1 1.8932 -0.5137 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 2.8582 0.2823 -3.4854 32 1 1.4323 3.1211 1.0253 33 1 3.4604 2.2090 2.0738 34 1 2.4419 0.8482 2.6022 35 1 -2.4953 2.2025 7.5003 36 1 -1.1405 2.4806 8.6210 37 1 -1.5133 0.8305 8.0672 38 1 -0.9431 0.1032 5.8862 39 1 0.5062 0.3215 4.0056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331771016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:46 Heat of formation + Delta-G solvation = 78.169127 kcal Electronic energy + Delta-G solvation = -23157.325349 eV Core-core repulsion = 19716.311464 eV Total energy + Delta-G solvation = -3441.013885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.65016 -40.53506 -37.62913 -36.58684 -35.05489 -33.32040 -31.50191 -30.58013 -30.26065 -28.09519 -26.89800 -24.85523 -24.24185 -23.69335 -23.25105 -21.14015 -19.25201 -19.03471 -18.64749 -17.17024 -17.04235 -16.55907 -15.82756 -15.58405 -15.06959 -14.64621 -14.24894 -14.17863 -13.76403 -13.58582 -13.46282 -12.99086 -12.79746 -12.54578 -12.46456 -11.99136 -11.81049 -11.62838 -11.01060 -10.98991 -10.91169 -10.85288 -10.59748 -10.51200 -10.21645 -9.90378 -9.58269 -9.40452 -8.91511 -8.56281 -8.36255 -7.53774 -6.10899 -4.16498 0.74946 1.15453 1.98051 2.18806 2.59542 3.07752 3.26158 3.33294 3.36951 3.63612 4.07999 4.34110 4.39634 4.51385 4.65245 4.83232 4.87823 5.17490 5.19416 5.20444 5.30463 5.41661 5.64081 5.82734 5.87806 6.02644 6.37064 6.39061 6.50619 6.69277 6.80991 7.03885 7.07766 7.31922 7.32795 7.59353 7.64575 7.71956 8.06494 8.18778 8.44141 8.45985 8.89757 9.48859 10.95057 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026666 B = 0.003702 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.755977 B = 7561.800022 C = 7993.508627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.008 0.992 5 C -0.515 4.515 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.138 3.862 15 C 0.228 3.772 16 N -0.277 5.277 17 N -0.208 5.208 18 C 0.091 3.909 19 C 0.598 3.402 20 O -0.489 6.489 21 N -0.536 5.536 22 C 0.076 3.924 23 C 0.076 3.924 24 C -0.005 4.005 25 N -0.382 5.382 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.014 0.986 29 H 0.090 0.910 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.341 0.659 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.186 0.814 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 -5.649 16.951 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.025 0.975 5 C -0.553 4.553 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.313 5.313 14 C 0.006 3.994 15 C -0.037 4.037 16 N -0.121 5.121 17 N -0.055 5.055 18 C -0.171 4.171 19 C 0.385 3.615 20 O -0.359 6.359 21 N -0.259 5.259 22 C -0.065 4.065 23 C -0.044 4.044 24 C -0.124 4.124 25 N -0.068 5.068 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.108 0.892 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.203 0.797 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -6.624 -4.367 17.394 19.118 hybrid contribution -0.223 -0.358 -1.169 1.242 sum -6.847 -4.725 16.226 18.234 Atomic orbital electron populations 1.21455 0.97446 0.97513 1.01325 1.21466 0.95052 0.98028 0.99653 1.19216 0.93463 0.91403 0.84925 0.97481 1.21125 1.32006 1.12102 0.90102 0.92161 1.24855 0.94915 0.94938 0.98934 1.69862 1.36558 1.22646 1.23593 0.86550 0.79341 0.79379 0.82510 1.20668 1.21215 1.19845 1.60923 1.47268 1.17215 1.05908 1.20490 0.96234 0.96742 0.85924 1.25257 0.91213 0.93832 0.93408 1.74858 1.21126 1.07789 1.08285 1.74590 1.05020 1.21256 1.04604 1.24502 1.06898 0.88216 0.97437 1.16452 0.79295 0.82416 0.83315 1.90918 1.63176 1.38543 1.43292 1.45276 1.41992 1.12497 1.26097 1.22045 0.93015 1.03730 0.87679 1.21373 0.99491 0.93800 0.89705 1.21118 0.99502 0.90427 1.01354 1.43551 1.30882 1.12640 1.19737 0.94257 0.92323 0.96641 0.89188 0.97195 0.92827 0.84110 0.91445 0.89417 0.90736 0.89094 0.89371 0.79729 0.79619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 9.52 37.16 0.35 -2.04 16 2 C -0.10 -2.23 5.59 -26.73 -0.15 -2.38 16 3 C 0.22 4.91 2.30 -68.86 -0.16 4.75 16 4 H 0.01 0.19 7.71 -51.93 -0.40 -0.21 16 5 C -0.51 -13.08 7.25 -34.44 -0.25 -13.33 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -23.85 11.32 55.43 0.63 -23.22 16 9 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 N -0.68 -13.03 5.65 -109.22 -0.62 -13.64 16 14 C 0.14 2.23 6.06 -4.97 -0.03 2.20 16 15 C 0.23 3.75 7.58 -155.29 -1.18 2.58 16 16 N -0.28 -5.24 12.23 32.73 0.40 -4.84 16 17 N -0.21 -3.99 12.28 32.34 0.40 -3.59 16 18 C 0.09 1.50 8.12 -154.29 -1.25 0.25 16 19 C 0.60 8.48 7.66 -12.59 -0.10 8.39 16 20 O -0.49 -8.12 16.79 5.15 0.09 -8.03 16 21 N -0.54 -4.97 3.06 -124.90 -0.38 -5.35 16 22 C 0.08 0.41 10.43 59.85 0.62 1.03 16 23 C 0.08 0.53 10.24 -16.56 -0.17 0.36 16 24 C -0.01 -0.05 10.87 -16.52 -0.18 -0.23 16 25 N -0.38 -5.49 2.97 -58.39 -0.17 -5.67 16 26 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 27 H 0.06 1.31 7.06 -51.93 -0.37 0.94 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 30 H 0.01 0.18 7.60 -51.93 -0.39 -0.21 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.34 6.94 8.13 -39.29 -0.32 6.62 16 33 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 34 H 0.09 1.25 7.61 -51.93 -0.40 0.86 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.58 7.45 -51.93 -0.39 0.19 16 37 H 0.09 0.17 8.03 -51.93 -0.42 -0.24 16 38 H 0.19 0.39 8.05 -52.49 -0.42 -0.03 16 39 H 0.19 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -32.22 329.76 -7.33 -39.54 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.03 Total: 1.12 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.58 Total: 3.19 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.25 Total: -56.32 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.22 -7.33 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331771016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.713 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds