Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 H 1.08996 * 109.46930 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47629 * 300.05345 * 3 2 1 6 6 H 1.07990 * 119.99969 * 119.99701 * 5 3 2 7 7 C 1.37879 * 119.99370 * 299.99845 * 5 3 2 8 8 N 1.31513 * 120.00415 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99332 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46869 * 90.00188 * 9 7 5 11 11 H 1.48504 * 109.46680 * 209.99852 * 9 7 5 12 12 H 1.48491 * 109.47228 * 329.99631 * 9 7 5 13 13 N 1.46904 * 109.46753 * 60.05124 * 3 2 1 14 14 C 1.46904 * 111.00097 * 85.93858 * 13 3 2 15 15 C 1.50700 * 109.47231 * 175.53245 * 14 13 3 16 16 N 1.31265 * 126.19957 * 269.99906 * 15 14 13 17 17 N 1.28797 * 110.03735 * 179.97438 * 16 15 14 18 18 C 1.31394 * 109.26246 * 0.02562 * 17 16 15 19 19 C 1.46889 * 134.26958 * 180.02562 * 18 17 16 20 20 O 1.21739 * 120.78627 * 359.97438 * 19 18 17 21 21 N 1.35147 * 118.42942 * 179.97438 * 19 18 17 22 22 C 1.46510 * 119.85579 * 179.97438 * 21 19 18 23 23 C 1.38157 * 120.29347 * 0.25747 * 21 19 18 24 24 C 1.32807 * 121.83793 * 359.48509 * 23 21 19 25 25 N 1.34471 * 126.19866 * 90.00328 * 15 14 13 26 26 H 1.08998 * 109.46932 * 295.59870 * 1 2 3 27 27 H 1.08997 * 109.47396 * 55.59583 * 1 2 3 28 28 H 1.09002 * 109.47180 * 175.59925 * 1 2 3 29 29 H 1.08998 * 109.46620 * 240.00650 * 2 1 3 30 30 H 1.08998 * 109.46789 * 120.00752 * 2 1 3 31 31 H 0.97001 * 120.00068 * 180.02562 * 8 7 5 32 32 H 1.00899 * 111.00018 * 209.88827 * 13 3 2 33 33 H 1.09001 * 109.46667 * 55.53251 * 14 13 3 34 34 H 1.09002 * 109.46969 * 295.53619 * 14 13 3 35 35 H 1.08995 * 109.46716 * 90.00090 * 22 21 19 36 36 H 1.09003 * 109.46583 * 329.99946 * 22 21 19 37 37 H 1.08996 * 109.47172 * 209.99941 * 22 21 19 38 38 H 1.07998 * 119.07748 * 179.72674 * 23 21 19 39 39 H 1.08004 * 119.45982 * 180.27280 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 -0.0005 5 6 1.5367 2.1534 -1.2298 6 1 0.9159 3.0314 -1.1298 7 6 1.8688 1.6827 -2.4824 8 7 2.6243 0.6131 -2.6041 9 14 1.2454 2.5643 -4.0068 10 1 2.2237 3.6057 -4.4111 11 1 1.0793 1.5857 -5.1114 12 1 -0.0622 3.2022 -3.7098 13 7 1.5513 2.1346 1.2001 14 6 2.4479 1.9065 2.3412 15 6 1.9763 2.7175 3.5206 16 7 2.3399 3.9444 3.8129 17 7 1.7472 4.3363 4.8871 18 6 0.9743 3.3714 5.3323 19 6 0.0743 3.2276 6.4842 20 8 -0.0727 4.1390 7.2778 21 7 -0.5868 2.0594 6.6423 22 6 -1.4919 1.8819 7.7806 23 6 -0.4084 1.0299 5.7385 24 6 0.3987 1.1496 4.6906 25 7 1.1069 2.3152 4.4643 26 1 -0.3633 0.4440 0.9268 27 1 -0.3634 0.5806 -0.8479 28 1 -0.3633 -1.0246 -0.0789 29 1 1.8932 -0.5137 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 2.8582 0.2823 -3.4854 32 1 1.4323 3.1211 1.0253 33 1 3.4604 2.2090 2.0738 34 1 2.4419 0.8482 2.6022 35 1 -2.4953 2.2025 7.5003 36 1 -1.1405 2.4806 8.6210 37 1 -1.5133 0.8305 8.0672 38 1 -0.9431 0.1032 5.8862 39 1 0.5062 0.3215 4.0056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331771016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = 56.445322 kcal Electronic energy + Delta-G solvation = -23158.267364 eV Core-core repulsion = 19716.311464 eV Total energy + Delta-G solvation = -3441.955900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -44.81200 -41.50295 -38.64151 -38.22825 -36.06281 -34.94908 -33.15704 -31.72822 -31.39355 -29.08973 -28.38132 -26.40113 -25.20970 -24.92765 -24.73443 -22.30689 -20.95341 -20.07607 -19.69824 -18.50269 -18.12957 -17.80384 -17.02670 -16.76205 -16.50845 -16.08676 -15.66915 -15.16739 -15.14621 -14.74381 -14.40482 -14.31239 -14.06417 -13.62303 -13.47233 -13.37005 -13.15992 -12.99769 -12.81839 -12.69732 -12.38683 -12.08147 -11.95828 -11.82466 -11.76725 -11.61288 -11.26440 -10.83683 -10.69079 -10.51321 -9.22573 -9.11986 -8.09154 -6.19588 -0.29324 0.19276 1.10096 1.17319 1.41807 1.42519 1.45485 1.53383 2.03991 2.43706 2.70157 3.02691 3.20714 3.40129 3.64285 3.76285 3.90815 4.24090 4.28734 4.45240 4.52698 4.57864 4.62644 4.72694 4.80949 4.86086 4.86726 5.01986 5.18314 5.34351 5.40481 5.48300 5.59948 5.72473 5.86188 5.88325 5.94746 6.31094 6.36416 6.37979 6.65893 6.95920 7.20810 7.48456 8.95323 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026666 B = 0.003702 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.755977 B = 7561.800022 C = 7993.508627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.023 1.023 5 C -0.525 4.525 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.946 3.054 10 H -0.282 1.282 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.669 5.669 14 C 0.148 3.852 15 C 0.217 3.783 16 N -0.310 5.310 17 N -0.259 5.259 18 C 0.082 3.918 19 C 0.588 3.412 20 O -0.526 6.526 21 N -0.522 5.522 22 C 0.067 3.933 23 C 0.114 3.886 24 C -0.051 4.051 25 N -0.367 5.367 26 H 0.055 0.945 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.261 0.739 32 H 0.331 0.669 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.252 0.748 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 -8.313 18.423 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.137 4.137 3 C 0.115 3.885 4 H -0.005 1.005 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.550 5.550 9 Si 0.773 3.227 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.301 5.301 14 C 0.017 3.983 15 C -0.050 4.050 16 N -0.154 5.154 17 N -0.105 5.105 18 C -0.181 4.181 19 C 0.376 3.624 20 O -0.399 6.399 21 N -0.242 5.242 22 C -0.072 4.072 23 C -0.005 4.005 24 C -0.167 4.167 25 N -0.051 5.051 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.155 0.845 38 H 0.268 0.732 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -8.912 -7.081 18.884 22.049 hybrid contribution 0.383 0.384 -1.474 1.570 sum -8.529 -6.698 17.410 20.511 Atomic orbital electron populations 1.21321 0.95973 0.98484 1.00812 1.21319 0.96235 0.96706 0.99401 1.19018 0.91563 0.92483 0.85447 1.00529 1.21396 1.31556 1.11908 0.91508 0.93100 1.25465 0.95268 0.95589 1.01235 1.69973 1.37472 1.23600 1.23924 0.85736 0.78724 0.78383 0.79853 1.20783 1.20839 1.19691 1.60844 1.47656 1.16202 1.05400 1.20427 0.95031 0.98117 0.84753 1.24994 0.92433 0.93438 0.94110 1.74709 1.22319 1.09424 1.08924 1.74459 1.07189 1.23272 1.05622 1.24941 1.06617 0.88248 0.98285 1.16523 0.79633 0.83796 0.82484 1.90893 1.64563 1.40220 1.44267 1.45563 1.40570 1.11061 1.27017 1.22466 0.92325 1.06676 0.85699 1.22432 0.96840 0.94336 0.86852 1.21909 1.01110 0.89761 1.03942 1.43678 1.29833 1.13416 1.18161 0.92551 0.95357 0.94458 0.92349 0.94469 0.92939 0.85226 0.92426 0.86749 0.89438 0.90487 0.84489 0.73245 0.77086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.10 9.52 71.98 0.69 -3.41 16 2 C -0.10 -4.10 5.59 30.59 0.17 -3.93 16 3 C 0.22 10.13 2.30 44.17 0.10 10.23 16 4 H -0.02 -1.16 7.71 -2.39 -0.02 -1.18 16 5 C -0.53 -27.04 7.25 25.60 0.19 -26.85 16 6 H 0.05 2.66 7.60 -2.92 -0.02 2.64 16 7 C 0.02 1.27 5.30 84.66 0.45 1.72 16 8 N -0.91 -49.46 11.32 21.45 0.24 -49.22 16 9 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 N -0.67 -25.46 5.65 -499.45 -2.82 -28.28 16 14 C 0.15 4.73 6.06 85.56 0.52 5.25 16 15 C 0.22 7.15 7.58 138.09 1.05 8.20 16 16 N -0.31 -12.24 12.23 -50.37 -0.62 -12.86 16 17 N -0.26 -10.38 12.28 -51.58 -0.63 -11.01 16 18 C 0.08 2.71 8.12 135.97 1.10 3.82 16 19 C 0.59 16.13 7.66 86.45 0.66 16.79 16 20 O -0.53 -17.61 16.79 -4.47 -0.08 -17.68 16 21 N -0.52 -7.67 3.06 -667.06 -2.04 -9.72 16 22 C 0.07 0.42 10.43 127.77 1.33 1.75 16 23 C 0.11 0.96 10.24 82.52 0.84 1.80 16 24 C -0.05 -0.79 10.87 82.50 0.90 0.11 16 25 N -0.37 -10.08 2.97 -338.65 -1.01 -11.09 16 26 H 0.06 1.91 7.75 -2.39 -0.02 1.89 16 27 H 0.03 1.22 7.06 -2.39 -0.02 1.20 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 2.85 6.07 -2.39 -0.01 2.84 16 30 H 0.04 1.33 7.60 -2.39 -0.02 1.31 16 31 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 32 H 0.33 13.76 8.13 -89.69 -0.73 13.03 16 33 H 0.06 1.97 7.94 -2.39 -0.02 1.95 16 34 H 0.11 3.01 7.61 -2.39 -0.02 2.99 16 35 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.08 0.78 7.45 -2.39 -0.02 0.76 16 37 H 0.14 -0.42 8.03 -2.39 -0.02 -0.43 16 38 H 0.25 -1.16 8.05 -2.91 -0.02 -1.18 16 39 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -75.89 329.76 3.43 -72.46 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.35 Total: 7.44 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 8.00 Total: 15.47 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -6.88 Total: -122.17 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.08 Total: -17.68 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -75.89 3.43 -72.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331771016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.906 kcal (2) G-P(sol) polarization free energy of solvation -75.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds