Wall clock time and date at job start Tue Mar 31 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46937 * 2 1 4 4 N 1.30175 * 126.80402 * 270.16809 * 3 2 1 5 5 O 1.20924 * 111.60861 * 180.25382 * 4 3 2 6 6 C 1.34043 * 111.56073 * 359.74151 * 5 4 3 7 7 C 1.50708 * 126.77120 * 180.02562 * 6 5 4 8 8 C 1.35444 * 106.45285 * 0.02562 * 6 5 4 9 9 C 1.50703 * 128.01065 * 179.97438 * 8 6 5 10 10 N 1.46497 * 109.46909 * 90.02458 * 9 8 6 11 11 C 1.35317 * 125.87010 * 125.00233 * 10 9 8 12 12 C 1.35348 * 106.17735 * 180.24864 * 11 10 9 13 13 C 1.50695 * 126.75026 * 179.78015 * 12 11 10 14 14 N 1.46501 * 109.47705 * 94.99599 * 13 12 11 15 15 C 1.36933 * 120.00058 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00207 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99868 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00084 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00269 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47154 * 59.99918 * 19 17 15 21 21 H 1.48506 * 109.47460 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47016 * 300.00016 * 19 17 15 23 23 N 1.33774 * 106.49647 * 359.63857 * 12 11 10 24 24 N 1.28636 * 108.88665 * 0.37294 * 23 12 11 25 25 H 1.09002 * 109.47216 * 299.99840 * 1 2 3 26 26 H 1.08997 * 109.47114 * 60.00060 * 1 2 3 27 27 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46815 * 240.00031 * 2 1 3 29 29 H 1.08997 * 109.47114 * 119.99940 * 2 1 3 30 30 H 1.08998 * 109.47231 * 269.99611 * 7 6 5 31 31 H 1.09000 * 109.47272 * 30.00182 * 7 6 5 32 32 H 1.09000 * 109.46860 * 150.00054 * 7 6 5 33 33 H 1.09000 * 109.46919 * 330.02940 * 9 8 6 34 34 H 1.08996 * 109.46955 * 210.01900 * 9 8 6 35 35 H 1.08002 * 126.90702 * 359.97438 * 11 10 9 36 36 H 1.09004 * 109.46902 * 214.99581 * 13 12 11 37 37 H 1.09001 * 109.47591 * 334.99010 * 13 12 11 38 38 H 0.96996 * 119.99307 * 359.97438 * 14 13 12 39 39 H 0.96999 * 120.00192 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2893 2.1571 -1.0423 5 8 2.6839 3.2553 -0.7254 6 6 2.7356 3.3947 0.6068 7 6 3.1750 4.6180 1.3695 8 6 2.3151 2.2192 1.1321 9 6 2.1841 1.8466 2.5865 10 7 0.8414 2.1916 3.0598 11 6 -0.0321 1.3450 3.6527 12 6 -1.1413 2.0734 3.9194 13 6 -2.4064 1.5825 4.5747 14 7 -2.3519 1.8613 6.0119 15 6 -3.3983 1.5025 6.8190 16 1 -4.2635 1.0136 6.3962 17 6 -3.3465 1.7661 8.1809 18 7 -2.2917 2.3614 8.6963 19 14 -4.7735 1.2760 9.2821 20 1 -4.9735 -0.1936 9.2086 21 1 -4.4740 1.6658 10.6835 22 1 -6.0077 1.9668 8.8298 23 7 -0.8923 3.3156 3.4897 24 7 0.2895 3.3519 2.9830 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.2483 4.5662 1.5522 31 1 2.9482 5.5106 0.7865 32 1 2.6462 4.6618 2.3217 33 1 2.9262 2.3922 3.1695 34 1 2.3463 0.7751 2.7030 35 1 0.1228 0.2976 3.8656 36 1 -3.2640 2.0941 4.1376 37 1 -2.5046 0.5086 4.4163 38 1 -1.5747 2.3000 6.3916 39 1 -2.2553 2.5453 9.6480 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331884406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:02 Heat of formation + Delta-G solvation = 166.096335 kcal Electronic energy + Delta-G solvation = -22835.294479 eV Core-core repulsion = 19398.093404 eV Total energy + Delta-G solvation = -3437.201075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -45.26470 -42.92015 -36.69347 -35.15452 -34.53284 -33.19654 -31.81042 -31.61788 -29.87990 -28.92295 -27.23885 -25.76359 -24.71569 -22.88384 -22.67061 -21.42805 -20.42988 -20.28836 -18.02399 -17.53629 -17.12009 -16.81841 -16.26259 -15.15296 -14.78138 -14.60644 -14.57137 -14.06390 -13.89686 -13.64304 -13.51931 -13.16390 -13.03456 -12.88890 -12.65856 -12.57845 -11.93592 -11.86451 -11.72945 -11.23845 -11.14178 -10.89546 -10.78627 -10.47165 -10.28594 -10.12155 -9.89878 -9.70631 -9.57480 -8.87003 -8.81442 -6.90630 -5.72943 -3.02477 1.05020 1.67575 1.86181 2.68540 2.77073 2.93545 3.46960 3.51316 3.52509 3.75209 4.02427 4.07258 4.42496 4.62631 4.68405 4.76187 4.84721 4.93122 4.96477 5.05001 5.10014 5.12880 5.27168 5.36898 5.49386 5.52466 5.60851 5.64671 5.69696 5.73460 5.85916 5.94400 6.18958 6.42298 6.67113 6.75266 6.80521 7.71614 7.95864 8.44430 8.86202 9.56184 10.11999 10.48114 11.49766 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028965 B = 0.003274 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.448058 B = 8550.562499 C = 9116.060239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C 0.044 3.956 4 N -0.365 5.365 5 O 0.096 5.904 6 C 0.021 3.979 7 C -0.083 4.083 8 C -0.237 4.237 9 C 0.203 3.797 10 N -0.297 5.297 11 C -0.043 4.043 12 C -0.004 4.004 13 C 0.233 3.767 14 N -0.725 5.725 15 C -0.240 4.240 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.285 1.285 23 N -0.253 5.253 24 N -0.092 5.092 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.188 0.812 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.897 -3.421 -17.386 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.116 4.116 4 N -0.071 5.071 5 O 0.034 5.966 6 C -0.044 4.044 7 C -0.140 4.140 8 C -0.242 4.242 9 C 0.081 3.919 10 N -0.092 5.092 11 C -0.193 4.193 12 C -0.142 4.142 13 C 0.104 3.896 14 N -0.370 5.370 15 C -0.371 4.371 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 N -0.121 5.121 24 N -0.071 5.071 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.205 0.795 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.219 0.781 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.866 -2.202 -19.115 24.315 hybrid contribution -0.472 -1.326 1.870 2.340 sum 14.394 -3.528 -17.245 22.738 Atomic orbital electron populations 1.21733 0.93394 1.02662 1.02806 1.19993 0.96857 0.87849 1.03823 1.23435 1.00817 0.99209 0.88149 1.73857 1.16964 0.92564 1.23687 1.84844 1.62310 1.27039 1.22363 1.24410 0.98434 0.97848 0.83743 1.20522 1.02370 0.91576 0.99564 1.20637 1.12157 0.95185 0.96214 1.19946 0.80150 1.03060 0.88698 1.47288 1.13798 1.08030 1.40035 1.23392 0.91241 0.99406 1.05282 1.22448 0.98522 0.90115 1.03131 1.18938 0.88631 0.96594 0.85472 1.42292 1.21844 1.72431 1.00450 1.19189 0.96754 1.32079 0.89126 0.90966 1.24748 0.97860 1.01380 0.96856 1.69673 1.28984 1.47335 1.12102 0.86239 0.81859 0.78064 0.79835 1.21243 1.21737 1.21192 1.75107 1.05948 1.19565 1.11484 1.78193 1.04409 1.04522 1.19994 0.92137 0.92444 0.91210 0.89817 0.89587 0.89051 0.89249 0.87991 0.87238 0.86550 0.79503 0.94436 0.94550 0.78102 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.16 0.37 -1.01 16 2 C -0.05 -0.39 6.44 -27.88 -0.18 -0.57 16 3 C 0.04 0.48 6.58 -82.10 -0.54 -0.06 16 4 N -0.36 -4.55 12.07 33.43 0.40 -4.14 16 5 O 0.10 1.11 11.20 17.17 0.19 1.31 16 6 C 0.02 0.20 7.49 -35.30 -0.26 -0.06 16 7 C -0.08 -0.57 10.25 36.01 0.37 -0.20 16 8 C -0.24 -2.36 5.69 -104.42 -0.59 -2.96 16 9 C 0.20 1.77 6.71 -5.19 -0.03 1.74 16 10 N -0.30 -3.95 3.43 -62.44 -0.21 -4.16 16 11 C -0.04 -0.62 11.50 -17.05 -0.20 -0.82 16 12 C 0.00 -0.08 6.61 -82.78 -0.55 -0.63 16 13 C 0.23 4.87 6.82 -5.20 -0.04 4.84 16 14 N -0.73 -18.90 5.59 -61.09 -0.34 -19.25 16 15 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 19 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 N -0.25 -5.08 12.41 33.29 0.41 -4.67 16 24 N -0.09 -1.55 12.92 60.35 0.78 -0.77 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.53 7.65 -51.93 -0.40 0.13 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 33 H 0.11 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.12 0.67 7.58 -51.93 -0.39 0.28 16 35 H 0.19 2.04 8.06 -52.49 -0.42 1.61 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.39 10.81 7.66 -40.82 -0.31 10.49 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -35.34 343.39 -5.09 -40.43 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.29 Total: 3.64 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.90 Total: -7.12 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 1.76 Total: -60.86 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: 0.19 Total: 1.31 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.34 -5.09 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331884406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.524 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds