Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46937 * 2 1 4 4 N 1.30175 * 126.80402 * 270.16809 * 3 2 1 5 5 O 1.20924 * 111.60861 * 180.25382 * 4 3 2 6 6 C 1.34043 * 111.56073 * 359.74151 * 5 4 3 7 7 C 1.50708 * 126.77120 * 180.02562 * 6 5 4 8 8 C 1.35444 * 106.45285 * 0.02562 * 6 5 4 9 9 C 1.50703 * 128.01065 * 179.97438 * 8 6 5 10 10 N 1.46497 * 109.46909 * 90.02458 * 9 8 6 11 11 C 1.35317 * 125.87010 * 125.00233 * 10 9 8 12 12 C 1.35348 * 106.17735 * 180.24864 * 11 10 9 13 13 C 1.50695 * 126.75026 * 179.78015 * 12 11 10 14 14 N 1.46501 * 109.47705 * 94.99599 * 13 12 11 15 15 C 1.36933 * 120.00058 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00207 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99868 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00084 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00269 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47154 * 59.99918 * 19 17 15 21 21 H 1.48506 * 109.47460 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47016 * 300.00016 * 19 17 15 23 23 N 1.33774 * 106.49647 * 359.63857 * 12 11 10 24 24 N 1.28636 * 108.88665 * 0.37294 * 23 12 11 25 25 H 1.09002 * 109.47216 * 299.99840 * 1 2 3 26 26 H 1.08997 * 109.47114 * 60.00060 * 1 2 3 27 27 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46815 * 240.00031 * 2 1 3 29 29 H 1.08997 * 109.47114 * 119.99940 * 2 1 3 30 30 H 1.08998 * 109.47231 * 269.99611 * 7 6 5 31 31 H 1.09000 * 109.47272 * 30.00182 * 7 6 5 32 32 H 1.09000 * 109.46860 * 150.00054 * 7 6 5 33 33 H 1.09000 * 109.46919 * 330.02940 * 9 8 6 34 34 H 1.08996 * 109.46955 * 210.01900 * 9 8 6 35 35 H 1.08002 * 126.90702 * 359.97438 * 11 10 9 36 36 H 1.09004 * 109.46902 * 214.99581 * 13 12 11 37 37 H 1.09001 * 109.47591 * 334.99010 * 13 12 11 38 38 H 0.96996 * 119.99307 * 359.97438 * 14 13 12 39 39 H 0.96999 * 120.00192 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2893 2.1571 -1.0423 5 8 2.6839 3.2553 -0.7254 6 6 2.7356 3.3947 0.6068 7 6 3.1750 4.6180 1.3695 8 6 2.3151 2.2192 1.1321 9 6 2.1841 1.8466 2.5865 10 7 0.8414 2.1916 3.0598 11 6 -0.0321 1.3450 3.6527 12 6 -1.1413 2.0734 3.9194 13 6 -2.4064 1.5825 4.5747 14 7 -2.3519 1.8613 6.0119 15 6 -3.3983 1.5025 6.8190 16 1 -4.2635 1.0136 6.3962 17 6 -3.3465 1.7661 8.1809 18 7 -2.2917 2.3614 8.6963 19 14 -4.7735 1.2760 9.2821 20 1 -4.9735 -0.1936 9.2086 21 1 -4.4740 1.6658 10.6835 22 1 -6.0077 1.9668 8.8298 23 7 -0.8923 3.3156 3.4897 24 7 0.2895 3.3519 2.9830 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.2483 4.5662 1.5522 31 1 2.9482 5.5106 0.7865 32 1 2.6462 4.6618 2.3217 33 1 2.9262 2.3922 3.1695 34 1 2.3463 0.7751 2.7030 35 1 0.1228 0.2976 3.8656 36 1 -3.2640 2.0941 4.1376 37 1 -2.5046 0.5086 4.4163 38 1 -1.5747 2.3000 6.3916 39 1 -2.2553 2.5453 9.6480 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331884406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = 141.634518 kcal Electronic energy + Delta-G solvation = -22836.355223 eV Core-core repulsion = 19398.093404 eV Total energy + Delta-G solvation = -3438.261819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 4.49 seconds Orbital eigenvalues (eV) -46.06302 -44.13821 -37.57279 -36.68890 -35.62973 -34.21422 -33.55048 -32.37648 -31.52832 -29.74739 -28.05383 -27.49289 -25.44843 -24.73695 -23.70736 -22.59861 -21.63161 -21.01378 -19.33066 -18.84419 -18.23266 -17.86687 -17.32545 -16.58670 -15.88876 -15.79347 -15.59723 -15.41889 -15.10598 -14.71488 -14.51968 -14.28592 -14.07034 -13.82863 -13.65234 -13.41463 -13.29891 -12.98744 -12.71406 -12.59679 -12.47196 -12.44351 -12.10775 -11.88704 -11.82928 -11.74008 -11.11068 -11.00989 -10.92148 -10.35344 -10.11783 -8.99057 -7.90904 -5.20965 0.27298 0.69386 0.89173 1.49566 1.54986 1.56090 1.61950 1.79827 2.04200 2.61782 3.04251 3.30067 3.36288 3.41705 3.58752 3.75674 4.00881 4.09936 4.17761 4.24871 4.26402 4.28644 4.32855 4.34264 4.47929 4.63433 4.64529 4.74414 4.90125 4.91000 4.93865 5.01033 5.14042 5.19896 5.22349 5.23908 5.52963 5.71876 6.28908 7.17757 7.36001 7.59528 8.07739 8.33810 9.32747 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028965 B = 0.003274 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.448058 B = 8550.562499 C = 9116.060239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.041 3.959 4 N -0.397 5.397 5 O 0.079 5.921 6 C 0.020 3.980 7 C -0.082 4.082 8 C -0.247 4.247 9 C 0.193 3.807 10 N -0.280 5.280 11 C -0.016 4.016 12 C -0.040 4.040 13 C 0.236 3.764 14 N -0.738 5.738 15 C -0.246 4.246 16 H 0.083 0.917 17 C -0.075 4.075 18 N -0.972 5.972 19 Si 0.977 3.023 20 H -0.272 1.272 21 H -0.297 1.297 22 H -0.280 1.280 23 N -0.303 5.303 24 N -0.103 5.103 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.156 0.844 35 H 0.229 0.771 36 H 0.023 0.977 37 H 0.062 0.938 38 H 0.371 0.629 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.870 -5.336 -17.415 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.119 4.119 4 N -0.107 5.107 5 O 0.020 5.980 6 C -0.045 4.045 7 C -0.139 4.139 8 C -0.252 4.252 9 C 0.074 3.926 10 N -0.074 5.074 11 C -0.167 4.167 12 C -0.178 4.178 13 C 0.108 3.892 14 N -0.381 5.381 15 C -0.377 4.377 16 H 0.101 0.899 17 C -0.267 4.267 18 N -0.622 5.622 19 Si 0.806 3.194 20 H -0.197 1.197 21 H -0.224 1.224 22 H -0.207 1.207 23 N -0.170 5.170 24 N -0.082 5.082 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.151 0.849 34 H 0.174 0.826 35 H 0.246 0.754 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.203 0.797 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 15.850 -4.105 -19.203 25.236 hybrid contribution -0.687 -0.730 1.742 2.010 sum 15.163 -4.835 -17.461 23.626 Atomic orbital electron populations 1.21684 0.94223 1.03367 1.00843 1.20154 0.95918 0.86762 1.05682 1.23932 0.99783 1.00126 0.88044 1.73851 1.18634 0.93222 1.24956 1.84809 1.62796 1.27020 1.23328 1.24992 0.97412 0.98753 0.83304 1.20648 1.04006 0.90649 0.98571 1.20792 1.12598 0.95138 0.96650 1.20545 0.78080 1.05972 0.88011 1.47640 1.14811 1.06785 1.38214 1.23828 0.89553 1.00601 1.02719 1.22228 0.99348 0.90813 1.05409 1.18935 0.89734 0.97694 0.82796 1.42490 1.20832 1.72257 1.02486 1.19657 0.97388 1.30960 0.89709 0.89948 1.25603 1.00530 1.02146 0.98425 1.69844 1.31158 1.49261 1.11966 0.85159 0.78655 0.78314 0.77290 1.19724 1.22355 1.20674 1.75036 1.07712 1.20986 1.13228 1.78089 1.03733 1.06107 1.20276 0.93965 0.94469 0.89150 0.89139 0.86565 0.86094 0.88695 0.88953 0.84875 0.82590 0.75420 0.95915 0.92016 0.79730 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.89 71.98 0.71 -1.69 16 2 C -0.05 -0.66 6.44 29.85 0.19 -0.47 16 3 C 0.04 0.82 6.58 43.58 0.29 1.11 16 4 N -0.40 -9.74 12.07 -49.54 -0.60 -10.34 16 5 O 0.08 1.81 11.20 71.60 0.80 2.61 16 6 C 0.02 0.37 7.49 25.04 0.19 0.56 16 7 C -0.08 -0.99 10.25 71.24 0.73 -0.26 16 8 C -0.25 -4.38 5.69 -19.73 -0.11 -4.49 16 9 C 0.19 2.68 6.71 85.63 0.57 3.25 16 10 N -0.28 -6.77 3.43 -351.47 -1.21 -7.98 16 11 C -0.02 -0.41 11.50 83.49 0.96 0.55 16 12 C -0.04 -1.45 6.61 41.59 0.28 -1.18 16 13 C 0.24 9.81 6.82 85.63 0.58 10.39 16 14 N -0.74 -38.57 5.59 -347.18 -1.94 -40.52 16 15 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 16 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 17 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 18 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 19 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 N -0.30 -12.23 12.41 -48.60 -0.60 -12.83 16 24 N -0.10 -3.40 12.92 37.02 0.48 -2.92 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.12 0.91 7.65 -2.39 -0.02 0.89 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 33 H 0.13 1.31 8.08 -2.39 -0.02 1.29 16 34 H 0.16 0.96 7.58 -2.39 -0.02 0.94 16 35 H 0.23 3.87 8.06 -2.91 -0.02 3.84 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.37 21.16 7.66 -92.71 -0.71 20.45 16 39 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -79.03 343.39 5.30 -73.73 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.36 Total: 19.20 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.70 Total: -9.04 kcal Atomic # 7 Polarization: -131.01 SS G_CDS: -3.59 Total: -134.60 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.80 Total: 2.61 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -79.03 5.30 -73.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331884406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.366 kcal (2) G-P(sol) polarization free energy of solvation -79.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.49 seconds