Wall clock time and date at job start Tue Mar 31 2020 07:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99505 * 2 1 4 4 C 1.50693 * 109.47326 * 66.04829 * 3 2 1 5 5 H 1.08000 * 120.00145 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00389 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99391 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00243 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46891 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46525 * 120.00349 * 8 6 4 11 11 H 1.48493 * 109.47407 * 240.00366 * 8 6 4 12 12 C 1.46910 * 110.99925 * 236.05222 * 2 1 3 13 13 C 1.52995 * 109.46752 * 199.84456 * 12 2 1 14 14 H 1.09001 * 109.47470 * 300.45618 * 13 12 2 15 15 O 1.42901 * 109.47238 * 60.45877 * 13 12 2 16 16 C 1.53002 * 109.47017 * 180.45237 * 13 12 2 17 17 N 1.46498 * 109.47161 * 175.00026 * 16 13 12 18 18 C 1.36001 * 126.31580 * 264.97775 * 17 16 13 19 19 N 1.30191 * 110.13656 * 180.02562 * 18 17 16 20 20 C 1.35588 * 109.62581 * 0.02562 * 19 18 17 21 21 N 1.33081 * 133.58948 * 179.97438 * 20 19 18 22 22 C 1.31899 * 119.77470 * 180.02562 * 21 20 19 23 23 C 1.38677 * 120.51240 * 0.02562 * 22 21 20 24 24 N 1.32061 * 120.43921 * 359.95391 * 23 22 21 25 25 C 1.32326 * 119.80495 * 0.08642 * 24 23 22 26 26 H 1.09009 * 109.46566 * 188.77741 * 1 2 3 27 27 H 1.09002 * 109.47352 * 308.77102 * 1 2 3 28 28 H 1.08995 * 109.47615 * 68.77765 * 1 2 3 29 29 H 1.09005 * 109.47084 * 186.05102 * 3 2 1 30 30 H 1.09002 * 109.47209 * 306.04869 * 3 2 1 31 31 H 0.97003 * 119.99120 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47251 * 79.84359 * 12 2 1 33 33 H 1.09005 * 109.46386 * 319.84271 * 12 2 1 34 34 H 0.96699 * 114.00280 * 59.99744 * 15 13 12 35 35 H 1.09009 * 109.46766 * 55.00240 * 16 13 12 36 36 H 1.08997 * 109.47433 * 295.00276 * 16 13 12 37 37 H 1.07993 * 124.93095 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.73964 * 180.02562 * 22 21 20 39 39 H 1.08002 * 119.77434 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0471 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0275 3.3492 1.5289 7 7 2.7126 4.0016 0.6153 8 14 1.5825 4.1869 3.1381 9 1 0.8144 3.2445 3.9909 10 1 2.8240 4.5936 3.8442 11 1 0.7558 5.3884 2.8586 12 6 1.9955 -0.7659 -1.1377 13 6 3.4449 -1.1664 -0.8558 14 1 4.0464 -0.2703 -0.7030 15 8 3.4947 -1.9795 0.3183 16 6 3.9969 -1.9544 -2.0455 17 7 5.4182 -2.2349 -1.8283 18 6 6.4643 -1.4996 -2.2917 19 7 7.5899 -2.0337 -1.9138 20 6 7.3422 -3.1485 -1.1828 21 7 8.1221 -4.0404 -0.5768 22 6 7.5785 -5.0488 0.0770 23 6 6.2001 -5.1875 0.1375 24 7 5.4126 -4.3106 -0.4583 25 6 5.9420 -3.2936 -1.1190 26 1 -0.3633 -1.0157 0.1568 27 1 -0.3634 0.6435 0.8012 28 1 -0.3634 0.3720 -0.9579 29 1 3.0797 1.3445 -0.1083 30 1 1.5609 1.9274 -0.8309 31 1 2.9870 4.9178 0.7773 32 1 1.9565 -0.1525 -2.0379 33 1 1.3923 -1.6623 -1.2824 34 1 2.9805 -2.7959 0.2535 35 1 3.8773 -1.3680 -2.9566 36 1 3.4521 -2.8934 -2.1437 37 1 6.3743 -0.6028 -2.8866 38 1 8.2120 -5.7721 0.5690 39 1 5.7677 -6.0180 0.6758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332277072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:00 Heat of formation + Delta-G solvation = 69.465439 kcal Electronic energy + Delta-G solvation = -23037.506365 eV Core-core repulsion = 19596.115060 eV Total energy + Delta-G solvation = -3441.391305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.70107 -39.35924 -38.05557 -35.77895 -34.73754 -33.22467 -32.54676 -30.29939 -29.90174 -27.43605 -26.58852 -25.03697 -24.04507 -23.52781 -22.25177 -20.90304 -20.22898 -18.50145 -18.26534 -16.76273 -16.56065 -16.40002 -15.79427 -15.44452 -15.06526 -14.77267 -14.72469 -14.16869 -13.86267 -13.78905 -13.51933 -13.11275 -12.72737 -12.32741 -12.05905 -11.95218 -11.69431 -11.57905 -11.29269 -11.08141 -10.96122 -10.89750 -10.68945 -10.46159 -10.08915 -9.84708 -9.26904 -9.06648 -8.87554 -8.82651 -8.48339 -7.32965 -6.08033 -4.08523 0.54125 0.95680 2.07321 2.55758 3.28758 3.36560 3.41402 3.47608 3.73969 3.84492 4.18670 4.35321 4.40949 4.46465 4.65053 4.74836 4.85545 4.99783 5.04849 5.25480 5.26926 5.30840 5.43085 5.47603 5.73679 5.82694 6.01990 6.17252 6.20433 6.20916 6.60415 6.64808 7.15132 7.17525 7.20647 7.43119 7.72866 7.76192 7.94196 7.99468 8.10831 8.46535 8.98805 9.55974 11.03171 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.003733 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.135130 B = 7497.951529 C = 7813.388357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.029 3.971 13 C 0.100 3.900 14 H 0.108 0.892 15 O -0.530 6.530 16 C 0.076 3.924 17 N -0.466 5.466 18 C 0.305 3.695 19 N -0.483 5.483 20 C 0.203 3.797 21 N -0.402 5.402 22 C 0.059 3.941 23 C 0.076 3.924 24 N -0.421 5.421 25 C 0.205 3.795 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.009 0.991 29 H 0.029 0.971 30 H -0.010 1.010 31 H 0.261 0.739 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.366 0.634 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.231 0.769 38 H 0.177 0.823 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -17.068 -7.246 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.101 4.101 13 C 0.039 3.961 14 H 0.126 0.874 15 O -0.333 6.333 16 C -0.047 4.047 17 N -0.156 5.156 18 C 0.015 3.985 19 N -0.203 5.203 20 C -0.043 4.043 21 N -0.118 5.118 22 C -0.113 4.113 23 C -0.094 4.094 24 N -0.139 5.139 25 C -0.036 4.036 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.212 0.788 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.247 0.753 38 H 0.194 0.806 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.275 -16.181 -6.914 18.108 hybrid contribution -1.690 0.389 0.005 1.734 sum 2.585 -15.792 -6.909 17.430 Atomic orbital electron populations 1.22230 0.88501 1.00105 1.00205 1.61999 1.06767 1.17874 1.38790 1.19776 0.95283 0.81407 0.96751 1.21174 1.34765 0.96829 1.01674 0.91786 1.24981 0.95231 0.97363 0.97022 1.69955 1.38460 1.11452 1.34067 0.86443 0.78225 0.79266 0.83535 1.19624 1.20953 1.21085 1.22590 0.94918 0.98572 0.94060 1.22330 0.96467 0.93583 0.83732 0.87436 1.86724 1.73669 1.35893 1.36968 1.22874 0.77222 1.03030 1.01524 1.45079 1.08363 1.20221 1.41964 1.25773 0.79728 0.96796 0.96155 1.70342 1.25769 1.07994 1.16174 1.20145 0.87994 0.95797 1.00386 1.67518 1.38413 1.00693 1.05204 1.23639 0.94592 0.95727 0.97362 1.23600 0.91472 0.97255 0.97068 1.67056 1.39935 1.00791 1.06165 1.19659 0.92519 0.92533 0.98861 0.93651 0.90314 0.97258 0.95348 0.99246 0.92956 0.94564 0.91766 0.78770 0.87385 0.88467 0.75284 0.80582 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.37 60.07 0.56 1.26 16 2 N -0.53 -10.80 4.56 -244.36 -1.11 -11.91 16 3 C 0.19 4.84 4.55 -4.98 -0.02 4.81 16 4 C -0.51 -14.10 8.39 -34.44 -0.29 -14.39 16 5 H 0.06 1.79 7.17 -52.49 -0.38 1.42 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.03 0.44 4.66 -3.82 -0.02 0.42 16 13 C 0.10 1.46 3.27 -26.73 -0.09 1.37 16 14 H 0.11 1.91 6.78 -51.93 -0.35 1.56 16 15 O -0.53 -8.78 12.79 -35.23 -0.45 -9.23 16 16 C 0.08 0.79 5.82 -4.04 -0.02 0.76 16 17 N -0.47 -5.85 2.77 -117.56 -0.33 -6.18 16 18 C 0.31 3.64 12.49 -89.75 -1.12 2.52 16 19 N -0.48 -7.48 11.27 -13.54 -0.15 -7.63 16 20 C 0.20 3.25 8.37 -156.98 -1.31 1.94 16 21 N -0.40 -5.99 10.54 -12.51 -0.13 -6.12 16 22 C 0.06 0.62 11.20 -17.36 -0.19 0.42 16 23 C 0.08 0.76 11.21 -17.29 -0.19 0.57 16 24 N -0.42 -5.53 10.52 -12.12 -0.13 -5.65 16 25 C 0.20 2.99 7.63 -155.59 -1.19 1.80 16 26 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.08 1.60 6.67 -51.93 -0.35 1.25 16 28 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 29 H 0.03 0.76 6.63 -51.93 -0.34 0.42 16 30 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.04 0.53 8.00 -51.93 -0.42 0.12 16 33 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 34 H 0.37 4.92 9.05 45.56 0.41 5.33 16 35 H 0.11 0.80 8.13 -51.92 -0.42 0.38 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.23 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -36.76 334.37 -9.88 -46.65 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.35 Total: 1.09 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -3.98 Total: 2.94 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -1.11 Total: -63.16 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.45 Total: -9.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.76 -9.88 -46.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332277072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.111 kcal (2) G-P(sol) polarization free energy of solvation -36.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds