Wall clock time and date at job start Tue Mar 31 2020 07:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99505 * 2 1 4 4 C 1.50693 * 109.47326 * 66.04829 * 3 2 1 5 5 H 1.08000 * 120.00145 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00389 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99391 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00243 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46891 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46525 * 120.00349 * 8 6 4 11 11 H 1.48493 * 109.47407 * 240.00366 * 8 6 4 12 12 C 1.46910 * 110.99925 * 236.05222 * 2 1 3 13 13 C 1.52995 * 109.46752 * 199.84456 * 12 2 1 14 14 H 1.09001 * 109.47470 * 300.45618 * 13 12 2 15 15 O 1.42901 * 109.47238 * 60.45877 * 13 12 2 16 16 C 1.53002 * 109.47017 * 180.45237 * 13 12 2 17 17 N 1.46498 * 109.47161 * 175.00026 * 16 13 12 18 18 C 1.36001 * 126.31580 * 264.97775 * 17 16 13 19 19 N 1.30191 * 110.13656 * 180.02562 * 18 17 16 20 20 C 1.35588 * 109.62581 * 0.02562 * 19 18 17 21 21 N 1.33081 * 133.58948 * 179.97438 * 20 19 18 22 22 C 1.31899 * 119.77470 * 180.02562 * 21 20 19 23 23 C 1.38677 * 120.51240 * 0.02562 * 22 21 20 24 24 N 1.32061 * 120.43921 * 359.95391 * 23 22 21 25 25 C 1.32326 * 119.80495 * 0.08642 * 24 23 22 26 26 H 1.09009 * 109.46566 * 188.77741 * 1 2 3 27 27 H 1.09002 * 109.47352 * 308.77102 * 1 2 3 28 28 H 1.08995 * 109.47615 * 68.77765 * 1 2 3 29 29 H 1.09005 * 109.47084 * 186.05102 * 3 2 1 30 30 H 1.09002 * 109.47209 * 306.04869 * 3 2 1 31 31 H 0.97003 * 119.99120 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47251 * 79.84359 * 12 2 1 33 33 H 1.09005 * 109.46386 * 319.84271 * 12 2 1 34 34 H 0.96699 * 114.00280 * 59.99744 * 15 13 12 35 35 H 1.09009 * 109.46766 * 55.00240 * 16 13 12 36 36 H 1.08997 * 109.47433 * 295.00276 * 16 13 12 37 37 H 1.07993 * 124.93095 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.73964 * 180.02562 * 22 21 20 39 39 H 1.08002 * 119.77434 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0471 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0275 3.3492 1.5289 7 7 2.7126 4.0016 0.6153 8 14 1.5825 4.1869 3.1381 9 1 0.8144 3.2445 3.9909 10 1 2.8240 4.5936 3.8442 11 1 0.7558 5.3884 2.8586 12 6 1.9955 -0.7659 -1.1377 13 6 3.4449 -1.1664 -0.8558 14 1 4.0464 -0.2703 -0.7030 15 8 3.4947 -1.9795 0.3183 16 6 3.9969 -1.9544 -2.0455 17 7 5.4182 -2.2349 -1.8283 18 6 6.4643 -1.4996 -2.2917 19 7 7.5899 -2.0337 -1.9138 20 6 7.3422 -3.1485 -1.1828 21 7 8.1221 -4.0404 -0.5768 22 6 7.5785 -5.0488 0.0770 23 6 6.2001 -5.1875 0.1375 24 7 5.4126 -4.3106 -0.4583 25 6 5.9420 -3.2936 -1.1190 26 1 -0.3633 -1.0157 0.1568 27 1 -0.3634 0.6435 0.8012 28 1 -0.3634 0.3720 -0.9579 29 1 3.0797 1.3445 -0.1083 30 1 1.5609 1.9274 -0.8309 31 1 2.9870 4.9178 0.7773 32 1 1.9565 -0.1525 -2.0379 33 1 1.3923 -1.6623 -1.2824 34 1 2.9805 -2.7959 0.2535 35 1 3.8773 -1.3680 -2.9566 36 1 3.4521 -2.8934 -2.1437 37 1 6.3743 -0.6028 -2.8866 38 1 8.2120 -5.7721 0.5690 39 1 5.7677 -6.0180 0.6758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332277072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:57 Heat of formation + Delta-G solvation = 41.044443 kcal Electronic energy + Delta-G solvation = -23038.738792 eV Core-core repulsion = 19596.115060 eV Total energy + Delta-G solvation = -3442.623732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -43.61699 -40.27752 -39.31764 -37.23444 -35.73689 -34.62788 -34.19465 -31.33878 -30.94311 -29.35568 -27.76621 -25.98165 -25.62865 -24.56792 -23.58718 -21.86631 -21.77205 -19.39989 -19.23095 -18.59156 -17.75366 -17.40678 -17.02058 -16.62807 -16.44954 -16.10867 -15.91102 -15.46387 -15.09558 -14.92795 -14.63709 -14.41105 -13.98631 -13.90619 -13.29393 -13.17753 -12.93779 -12.91470 -12.64058 -12.59486 -12.58756 -12.35021 -12.26925 -11.94500 -11.65613 -11.37057 -11.10733 -10.63373 -10.10547 -9.80103 -9.73386 -8.94340 -8.23323 -6.31527 -0.34179 0.06883 1.20030 1.36977 1.38950 1.51378 1.63585 2.37941 2.64838 2.81925 2.96416 3.09771 3.17334 3.37472 3.51196 3.75951 3.81914 3.90972 4.05152 4.13870 4.22429 4.38109 4.39594 4.53826 4.63204 4.65761 4.76390 4.81312 5.04683 5.09434 5.20085 5.29569 5.39957 5.63203 5.76200 6.05602 6.25563 6.32972 6.52020 6.64102 6.84538 6.86162 6.92803 7.37933 8.87630 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.003733 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.135130 B = 7497.951529 C = 7813.388357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.546 5.546 3 C 0.211 3.789 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.003 3.997 7 N -0.932 5.932 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.275 1.275 12 C 0.030 3.970 13 C 0.107 3.893 14 H 0.066 0.934 15 O -0.556 6.556 16 C 0.087 3.913 17 N -0.466 5.466 18 C 0.305 3.695 19 N -0.525 5.525 20 C 0.162 3.838 21 N -0.442 5.442 22 C 0.067 3.933 23 C 0.085 3.915 24 N -0.436 5.436 25 C 0.183 3.817 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.017 0.983 29 H 0.003 0.997 30 H -0.035 1.035 31 H 0.264 0.736 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.379 0.621 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.269 0.731 38 H 0.221 0.779 39 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.773 -18.978 -7.030 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.270 5.270 3 C 0.084 3.916 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.195 4.195 7 N -0.573 5.573 8 Si 0.788 3.212 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.200 1.200 12 C -0.099 4.099 13 C 0.046 3.954 14 H 0.084 0.916 15 O -0.361 6.361 16 C -0.034 4.034 17 N -0.156 5.156 18 C 0.016 3.984 19 N -0.246 5.246 20 C -0.082 4.082 21 N -0.159 5.159 22 C -0.106 4.106 23 C -0.086 4.086 24 N -0.154 5.154 25 C -0.056 4.056 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.021 0.979 30 H -0.017 1.017 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.227 0.773 35 H 0.161 0.839 36 H 0.135 0.865 37 H 0.285 0.715 38 H 0.237 0.763 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.032 -18.088 -6.727 19.535 hybrid contribution -1.295 0.822 0.002 1.534 sum 1.737 -17.266 -6.725 18.611 Atomic orbital electron populations 1.22226 0.87244 1.01690 0.99633 1.61869 1.08045 1.15160 1.41936 1.19362 0.93629 0.83918 0.94663 1.21520 1.34583 0.97381 1.02666 0.92398 1.25838 0.95113 0.98133 1.00419 1.70064 1.39433 1.11856 1.35954 0.85428 0.78025 0.78371 0.79396 1.18946 1.20767 1.20043 1.22700 0.95594 0.99213 0.92424 1.22140 0.95670 0.92713 0.84886 0.91562 1.86681 1.74262 1.36798 1.38397 1.22870 0.76149 1.03790 1.00602 1.45216 1.09054 1.19767 1.41565 1.26549 0.78981 0.97201 0.95619 1.70250 1.27755 1.08949 1.17639 1.20467 0.89219 0.96688 1.01844 1.67523 1.39686 1.02033 1.06702 1.24481 0.95741 0.94816 0.95514 1.24488 0.91444 0.97216 0.95446 1.67168 1.40559 1.01023 1.06686 1.19861 0.92287 0.93585 0.99847 0.90119 0.93017 0.96443 0.97893 1.01705 0.92743 0.93678 0.88038 0.77277 0.83922 0.86506 0.71541 0.76290 0.75802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 9.37 127.69 1.20 2.61 16 2 N -0.55 -21.94 4.56 -927.03 -4.22 -26.16 16 3 C 0.21 10.84 4.55 85.55 0.39 11.23 16 4 C -0.52 -29.74 8.39 25.60 0.21 -29.52 16 5 H 0.06 3.29 7.17 -2.91 -0.02 3.26 16 6 C 0.00 0.17 5.46 84.65 0.46 0.63 16 7 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 8 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.03 0.85 4.66 86.30 0.40 1.25 16 13 C 0.11 3.02 3.27 30.59 0.10 3.12 16 14 H 0.07 2.44 6.78 -2.39 -0.02 2.42 16 15 O -0.56 -18.02 12.79 -148.98 -1.91 -19.93 16 16 C 0.09 1.63 5.82 86.38 0.50 2.13 16 17 N -0.47 -11.39 2.77 -525.84 -1.46 -12.85 16 18 C 0.31 7.31 12.49 180.04 2.25 9.55 16 19 N -0.52 -16.84 11.27 -196.76 -2.22 -19.06 16 20 C 0.16 5.30 8.37 134.43 1.13 6.43 16 21 N -0.44 -13.20 10.54 -193.50 -2.04 -15.24 16 22 C 0.07 1.27 11.20 84.79 0.95 2.22 16 23 C 0.08 1.47 11.21 84.76 0.95 2.42 16 24 N -0.44 -10.74 10.52 -192.25 -2.02 -12.76 16 25 C 0.18 5.28 7.63 133.94 1.02 6.30 16 26 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 27 H 0.05 2.08 6.67 -2.39 -0.02 2.07 16 28 H 0.02 0.57 8.13 -2.39 -0.02 0.55 16 29 H 0.00 0.17 6.63 -2.38 -0.02 0.15 16 30 H -0.03 -1.91 8.12 -2.39 -0.02 -1.93 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.05 1.24 8.00 -2.39 -0.02 1.22 16 33 H 0.10 2.16 7.94 -2.38 -0.02 2.14 16 34 H 0.38 9.51 9.05 -74.06 -0.67 8.84 16 35 H 0.14 1.66 8.13 -2.38 -0.02 1.65 16 36 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.27 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.22 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.23 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -84.45 334.37 -1.59 -86.03 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.41 Total: 10.25 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 9.56 Total: 18.38 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -11.68 Total: -141.59 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.91 Total: -19.93 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -84.45 -1.59 -86.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332277072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.078 kcal (2) G-P(sol) polarization free energy of solvation -84.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds