Wall clock time and date at job start Tue Mar 31 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46811 * 2 1 4 4 N 1.46504 * 109.46618 * 180.02562 * 3 2 1 5 5 N 1.40587 * 127.38058 * 272.55222 * 4 3 2 6 6 N 1.28904 * 106.81888 * 180.02562 * 5 4 3 7 7 N 1.28429 * 110.31362 * 359.73008 * 6 5 4 8 8 C 1.31469 * 110.50655 * 0.45790 * 7 6 5 9 9 N 1.38383 * 126.43635 * 179.82162 * 8 7 6 10 10 C 1.46904 * 110.99571 * 253.44788 * 9 8 7 11 11 C 1.50706 * 109.47061 * 59.75563 * 10 9 8 12 12 H 1.08004 * 119.99516 * 4.01023 * 11 10 9 13 13 C 1.37878 * 119.99951 * 184.00757 * 11 10 9 14 14 N 1.31513 * 119.99756 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99759 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47244 * 90.00224 * 15 13 11 17 17 H 1.48498 * 109.47031 * 210.00376 * 15 13 11 18 18 H 1.48502 * 109.47265 * 329.99939 * 15 13 11 19 19 C 1.46895 * 111.00261 * 17.40392 * 9 8 7 20 20 C 1.50699 * 109.47267 * 163.72456 * 19 9 8 21 21 C 1.34519 * 125.79103 * 95.08218 * 20 19 9 22 22 C 1.41383 * 106.84304 * 180.02562 * 21 20 19 23 23 C 1.34513 * 106.83765 * 0.02562 * 22 21 20 24 24 O 1.34296 * 125.79251 * 275.08595 * 20 19 9 25 25 H 1.08997 * 109.47060 * 300.00340 * 1 2 3 26 26 H 1.08997 * 109.46759 * 59.99886 * 1 2 3 27 27 H 1.08998 * 109.47260 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47060 * 239.99660 * 2 1 3 29 29 H 1.09004 * 109.46813 * 119.99447 * 2 1 3 30 30 H 1.09003 * 109.47414 * 60.00425 * 3 2 1 31 31 H 1.08995 * 109.47084 * 299.99409 * 3 2 1 32 32 H 1.09002 * 109.46816 * 179.75359 * 10 9 8 33 33 H 1.09003 * 109.47584 * 299.75524 * 10 9 8 34 34 H 0.97000 * 119.99568 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.47091 * 43.72201 * 19 9 8 36 36 H 1.09004 * 109.46891 * 283.72053 * 19 9 8 37 37 H 1.08007 * 126.57458 * 359.97438 * 21 20 19 38 38 H 1.07993 * 126.57671 * 180.02562 * 22 21 20 39 39 H 1.07998 * 125.78466 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3590 1.3926 1.1150 6 7 5.5657 1.4133 0.6623 7 7 5.5596 1.4654 -0.6209 8 6 4.3261 1.4912 -1.0750 9 7 3.9400 1.5508 -2.4025 10 6 3.4245 2.8841 -2.7414 11 6 4.4973 3.9142 -2.4982 12 1 5.4849 3.6031 -2.1911 13 6 4.2180 5.2537 -2.6680 14 7 3.0152 5.6323 -3.0416 15 14 5.5479 6.5304 -2.3673 16 1 6.2892 6.7799 -3.6297 17 1 4.9239 7.7949 -1.9015 18 1 6.4879 6.0316 -1.3315 19 6 5.0477 1.1734 -3.2904 20 6 4.5078 0.8613 -4.6623 21 6 4.4410 1.7201 -5.6955 22 6 3.8709 1.0135 -6.7794 23 6 3.6231 -0.2347 -6.3435 24 8 4.0118 -0.3214 -5.0609 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.1324 2.9045 -3.7913 33 1 2.5582 3.1078 -2.1188 34 1 2.8188 6.5747 -3.1613 35 1 5.5513 0.2938 -2.8894 36 1 5.7566 1.9987 -3.3580 37 1 4.7606 2.7518 -5.6966 38 1 3.6726 1.4015 -7.7675 39 1 3.1861 -1.0320 -6.9263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332488136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:59 Heat of formation + Delta-G solvation = 137.794120 kcal Electronic energy + Delta-G solvation = -23908.706980 eV Core-core repulsion = 20470.278629 eV Total energy + Delta-G solvation = -3438.428352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.33277 -42.10750 -37.51210 -35.85126 -32.85069 -32.63487 -32.36276 -31.05496 -29.70400 -27.48476 -26.72727 -25.17621 -23.29736 -22.44214 -21.54706 -21.30891 -20.68466 -19.78928 -17.35948 -16.78906 -16.53876 -16.21252 -15.90788 -15.28645 -15.15819 -14.76446 -14.22360 -13.84154 -13.42958 -13.28365 -12.86378 -12.54353 -12.43702 -12.37186 -12.25541 -12.10101 -11.61730 -11.57232 -11.36768 -11.23294 -11.09568 -10.89070 -10.61348 -10.48530 -10.27956 -10.13018 -9.74550 -9.61127 -9.46158 -8.67699 -8.20679 -7.98340 -6.30644 -4.40082 1.70387 1.98500 2.40435 3.00479 3.02103 3.18212 3.25799 3.33474 3.36252 4.25334 4.32928 4.70587 4.84974 5.03652 5.08321 5.10946 5.17824 5.30794 5.41016 5.44242 5.52591 5.64156 5.69244 5.85582 5.94865 6.08617 6.14799 6.17578 6.19551 6.22252 6.39682 6.45096 6.52808 6.77029 6.91259 7.06488 7.17825 7.54710 7.60647 7.65728 7.85325 8.67487 9.18433 9.29909 10.76131 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.008411 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.714727 B = 3327.989200 C = 5069.629494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.129 3.871 4 N -0.380 5.380 5 N -0.109 5.109 6 N -0.041 5.041 7 N -0.367 5.367 8 C 0.469 3.531 9 N -0.464 5.464 10 C 0.188 3.812 11 C -0.566 4.566 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.884 5.884 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.150 3.850 20 C 0.005 3.995 21 C -0.187 4.187 22 C -0.214 4.214 23 C -0.053 4.053 24 O -0.175 6.175 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.266 0.734 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.446 -10.045 -2.518 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.006 3.994 4 N -0.178 5.178 5 N -0.096 5.096 6 N -0.037 5.037 7 N -0.226 5.226 8 C 0.103 3.897 9 N -0.189 5.189 10 C 0.065 3.935 11 C -0.605 4.605 12 H 0.089 0.911 13 C -0.130 4.130 14 N -0.521 5.521 15 Si 0.719 3.281 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.195 1.195 19 C 0.023 3.977 20 C -0.046 4.046 21 C -0.207 4.207 22 C -0.233 4.233 23 C -0.121 4.121 24 O -0.071 6.071 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.044 -10.504 -1.433 11.346 hybrid contribution 0.131 1.643 -0.614 1.759 sum -3.913 -8.861 -2.047 9.900 Atomic orbital electron populations 1.21669 0.94155 1.02221 1.02419 1.21875 0.96802 0.95472 1.03359 1.22031 0.72858 0.98866 1.05600 1.51186 1.08865 1.53519 1.04227 1.82358 0.95181 1.25090 1.06952 1.77723 1.13103 1.09433 1.03459 1.74863 1.17368 1.27254 1.03153 1.22956 0.85471 0.91911 0.89378 1.59383 1.32018 1.32473 0.95037 1.20170 0.95807 0.78464 0.99031 1.21708 0.98222 0.91769 1.48760 0.91063 1.24873 0.95567 0.98493 0.94057 1.69919 1.19772 1.16988 1.45465 0.86560 0.81883 0.80654 0.79007 1.20131 1.21010 1.19507 1.20381 0.90680 1.02219 0.84428 1.22164 1.02401 0.83370 0.96662 1.21756 1.05200 1.01187 0.92567 1.21812 1.06169 0.94515 1.00805 1.23881 1.05226 0.99606 0.83385 1.83993 1.61701 1.34750 1.26657 0.92365 0.91957 0.92116 0.90811 0.91283 0.88514 0.87306 0.92189 0.94177 0.92401 0.89580 0.87725 0.82887 0.83897 0.78707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.14 -1.68 6.26 -26.73 -0.17 -1.85 16 3 C 0.13 1.94 6.47 -4.04 -0.03 1.91 16 4 N -0.38 -7.27 3.69 -61.86 -0.23 -7.50 16 5 N -0.11 -2.22 13.93 60.35 0.84 -1.38 16 6 N -0.04 -0.90 13.38 60.35 0.81 -0.09 16 7 N -0.37 -8.12 11.02 30.10 0.33 -7.78 16 8 C 0.47 9.74 5.88 -320.42 -1.88 7.86 16 9 N -0.46 -9.28 4.67 -177.59 -0.83 -10.11 16 10 C 0.19 4.28 4.85 -4.97 -0.02 4.26 16 11 C -0.57 -14.37 7.61 -34.44 -0.26 -14.63 16 12 H 0.07 1.88 6.36 -52.48 -0.33 1.54 16 13 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 14 N -0.88 -23.86 13.29 55.43 0.74 -23.13 16 15 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.15 2.79 4.84 -4.98 -0.02 2.77 16 20 C 0.00 0.08 6.28 -35.62 -0.22 -0.14 16 21 C -0.19 -3.22 9.80 -39.70 -0.39 -3.61 16 22 C -0.21 -3.09 10.91 -39.70 -0.43 -3.52 16 23 C -0.05 -0.71 12.09 29.42 0.36 -0.35 16 24 O -0.18 -2.87 10.65 5.73 0.06 -2.81 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.11 1.71 6.20 -51.93 -0.32 1.39 16 32 H 0.06 1.43 6.61 -51.93 -0.34 1.09 16 33 H 0.04 0.96 6.31 -51.93 -0.33 0.64 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.09 1.53 7.79 -51.93 -0.40 1.12 16 36 H 0.10 2.09 6.40 -51.93 -0.33 1.76 16 37 H 0.15 2.75 8.06 -52.48 -0.42 2.33 16 38 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -29.32 332.84 -6.10 -35.42 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.00 Total: 3.00 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.81 Total: -6.50 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 1.66 Total: -49.99 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: 0.06 Total: -2.81 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.32 -6.10 -35.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332488136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.209 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds