Wall clock time and date at job start Tue Mar 31 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46811 * 2 1 4 4 N 1.46504 * 109.46618 * 180.02562 * 3 2 1 5 5 N 1.40587 * 127.38058 * 272.55222 * 4 3 2 6 6 N 1.28904 * 106.81888 * 180.02562 * 5 4 3 7 7 N 1.28429 * 110.31362 * 359.73008 * 6 5 4 8 8 C 1.31469 * 110.50655 * 0.45790 * 7 6 5 9 9 N 1.38383 * 126.43635 * 179.82162 * 8 7 6 10 10 C 1.46904 * 110.99571 * 253.44788 * 9 8 7 11 11 C 1.50706 * 109.47061 * 59.75563 * 10 9 8 12 12 H 1.08004 * 119.99516 * 4.01023 * 11 10 9 13 13 C 1.37878 * 119.99951 * 184.00757 * 11 10 9 14 14 N 1.31513 * 119.99756 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99759 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47244 * 90.00224 * 15 13 11 17 17 H 1.48498 * 109.47031 * 210.00376 * 15 13 11 18 18 H 1.48502 * 109.47265 * 329.99939 * 15 13 11 19 19 C 1.46895 * 111.00261 * 17.40392 * 9 8 7 20 20 C 1.50699 * 109.47267 * 163.72456 * 19 9 8 21 21 C 1.34519 * 125.79103 * 95.08218 * 20 19 9 22 22 C 1.41383 * 106.84304 * 180.02562 * 21 20 19 23 23 C 1.34513 * 106.83765 * 0.02562 * 22 21 20 24 24 O 1.34296 * 125.79251 * 275.08595 * 20 19 9 25 25 H 1.08997 * 109.47060 * 300.00340 * 1 2 3 26 26 H 1.08997 * 109.46759 * 59.99886 * 1 2 3 27 27 H 1.08998 * 109.47260 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47060 * 239.99660 * 2 1 3 29 29 H 1.09004 * 109.46813 * 119.99447 * 2 1 3 30 30 H 1.09003 * 109.47414 * 60.00425 * 3 2 1 31 31 H 1.08995 * 109.47084 * 299.99409 * 3 2 1 32 32 H 1.09002 * 109.46816 * 179.75359 * 10 9 8 33 33 H 1.09003 * 109.47584 * 299.75524 * 10 9 8 34 34 H 0.97000 * 119.99568 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.47091 * 43.72201 * 19 9 8 36 36 H 1.09004 * 109.46891 * 283.72053 * 19 9 8 37 37 H 1.08007 * 126.57458 * 359.97438 * 21 20 19 38 38 H 1.07993 * 126.57671 * 180.02562 * 22 21 20 39 39 H 1.07998 * 125.78466 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3590 1.3926 1.1150 6 7 5.5657 1.4133 0.6623 7 7 5.5596 1.4654 -0.6209 8 6 4.3261 1.4912 -1.0750 9 7 3.9400 1.5508 -2.4025 10 6 3.4245 2.8841 -2.7414 11 6 4.4973 3.9142 -2.4982 12 1 5.4849 3.6031 -2.1911 13 6 4.2180 5.2537 -2.6680 14 7 3.0152 5.6323 -3.0416 15 14 5.5479 6.5304 -2.3673 16 1 6.2892 6.7799 -3.6297 17 1 4.9239 7.7949 -1.9015 18 1 6.4879 6.0316 -1.3315 19 6 5.0477 1.1734 -3.2904 20 6 4.5078 0.8613 -4.6623 21 6 4.4410 1.7201 -5.6955 22 6 3.8709 1.0135 -6.7794 23 6 3.6231 -0.2347 -6.3435 24 8 4.0118 -0.3214 -5.0609 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.1324 2.9045 -3.7913 33 1 2.5582 3.1078 -2.1188 34 1 2.8188 6.5747 -3.1613 35 1 5.5513 0.2938 -2.8894 36 1 5.7566 1.9987 -3.3580 37 1 4.7606 2.7518 -5.6966 38 1 3.6726 1.4015 -7.7675 39 1 3.1861 -1.0320 -6.9263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332488136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:57 Heat of formation + Delta-G solvation = 120.521102 kcal Electronic energy + Delta-G solvation = -23909.455995 eV Core-core repulsion = 20470.278629 eV Total energy + Delta-G solvation = -3439.177366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.94203 -43.37512 -39.16207 -37.13998 -34.83659 -33.88877 -33.63141 -32.59497 -31.22626 -29.17004 -28.03288 -26.74683 -24.90327 -24.05760 -22.78498 -22.53620 -22.16061 -21.13916 -19.09645 -18.23542 -18.06781 -17.71974 -17.52834 -16.81987 -16.46849 -16.21605 -15.73191 -15.34751 -14.82657 -14.59865 -14.40179 -14.13938 -13.74601 -13.67180 -13.53482 -13.35983 -13.16660 -13.07161 -12.90276 -12.63890 -12.59200 -12.48269 -12.25922 -12.18040 -11.84964 -11.74635 -11.32369 -11.24050 -10.76289 -10.66888 -9.80839 -9.33432 -8.32285 -6.45817 0.06829 0.63692 1.02492 1.30104 1.31530 1.34248 1.43852 1.78829 2.14550 2.30222 2.78506 3.00395 3.30477 3.65122 3.77750 3.86748 4.00596 4.14215 4.19373 4.24106 4.35184 4.44204 4.46981 4.63389 4.66017 4.77951 4.85541 5.00722 5.05088 5.08800 5.14387 5.16063 5.16877 5.27732 5.36942 5.46171 5.60296 5.70090 5.85523 5.97891 6.32243 6.66058 7.25484 7.51991 8.73725 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.008411 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.714727 B = 3327.989200 C = 5069.629494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.118 3.882 4 N -0.372 5.372 5 N -0.105 5.105 6 N -0.058 5.058 7 N -0.383 5.383 8 C 0.455 3.545 9 N -0.452 5.452 10 C 0.208 3.792 11 C -0.568 4.568 12 H 0.058 0.942 13 C 0.035 3.965 14 N -0.907 5.907 15 Si 0.941 3.059 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.283 1.283 19 C 0.155 3.845 20 C -0.018 4.018 21 C -0.198 4.198 22 C -0.227 4.227 23 C -0.031 4.031 24 O -0.185 6.185 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.028 0.972 34 H 0.269 0.731 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.136 0.864 38 H 0.169 0.831 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 -11.073 -3.194 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.003 4.003 4 N -0.170 5.170 5 N -0.092 5.092 6 N -0.054 5.054 7 N -0.243 5.243 8 C 0.089 3.911 9 N -0.177 5.177 10 C 0.084 3.916 11 C -0.607 4.607 12 H 0.076 0.924 13 C -0.167 4.167 14 N -0.545 5.545 15 Si 0.767 3.233 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.209 1.209 19 C 0.029 3.971 20 C -0.068 4.068 21 C -0.219 4.219 22 C -0.246 4.246 23 C -0.098 4.098 24 O -0.081 6.081 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.154 0.846 38 H 0.186 0.814 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -5.202 -11.538 -2.108 12.830 hybrid contribution 0.440 1.903 -0.432 2.001 sum -4.761 -9.634 -2.540 11.043 Atomic orbital electron populations 1.21656 0.91741 1.03473 1.03009 1.21814 0.98662 0.93113 1.02820 1.22451 0.70598 1.01095 1.06108 1.51503 1.10100 1.52057 1.03378 1.82265 0.95076 1.24451 1.07456 1.77702 1.13735 1.10565 1.03447 1.74785 1.18458 1.27604 1.03431 1.23032 0.85586 0.92588 0.89850 1.59366 1.32609 1.30756 0.94978 1.19782 0.94676 0.79243 0.97948 1.21845 0.98220 0.92525 1.48062 0.92393 1.25448 0.97056 0.99988 0.94192 1.69978 1.20790 1.17376 1.46380 0.85805 0.79785 0.78942 0.78763 1.19065 1.20446 1.20891 1.20236 0.90057 1.01661 0.85172 1.21836 1.04467 0.84314 0.96172 1.21823 1.05467 1.00631 0.93935 1.22106 1.06424 0.94800 1.01267 1.24848 1.02534 1.00423 0.82026 1.83986 1.61859 1.34001 1.28258 0.91112 0.92062 0.90529 0.92032 0.91087 0.86663 0.88059 0.93237 0.95359 0.92208 0.88971 0.89638 0.84602 0.81387 0.73834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.13 -2.92 6.26 30.60 0.19 -2.73 16 3 C 0.12 3.45 6.47 86.38 0.56 4.01 16 4 N -0.37 -14.16 3.69 -349.62 -1.29 -15.45 16 5 N -0.10 -4.27 13.93 37.02 0.52 -3.75 16 6 N -0.06 -2.58 13.38 37.02 0.50 -2.08 16 7 N -0.38 -17.20 11.02 -58.70 -0.65 -17.84 16 8 C 0.46 19.14 5.88 260.65 1.53 20.67 16 9 N -0.45 -18.37 4.67 -715.78 -3.35 -21.72 16 10 C 0.21 9.63 4.85 85.56 0.41 10.04 16 11 C -0.57 -29.36 7.61 25.60 0.19 -29.17 16 12 H 0.06 3.13 6.36 -2.91 -0.02 3.11 16 13 C 0.04 1.87 5.46 84.66 0.46 2.33 16 14 N -0.91 -49.15 13.29 21.45 0.28 -48.86 16 15 Si 0.94 43.15 29.54 68.60 2.03 45.18 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 19 C 0.16 5.94 4.84 85.56 0.41 6.35 16 20 C -0.02 -0.62 6.28 24.83 0.16 -0.47 16 21 C -0.20 -6.83 9.80 22.19 0.22 -6.61 16 22 C -0.23 -6.10 10.91 22.19 0.24 -5.86 16 23 C -0.03 -0.74 12.09 66.97 0.81 0.07 16 24 O -0.18 -5.77 10.65 -2.41 -0.03 -5.80 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.10 3.16 6.20 -2.39 -0.01 3.15 16 32 H 0.05 2.42 6.61 -2.39 -0.02 2.40 16 33 H 0.03 1.38 6.31 -2.39 -0.02 1.37 16 34 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.09 3.34 7.79 -2.39 -0.02 3.33 16 36 H 0.09 3.57 6.40 -2.39 -0.02 3.56 16 37 H 0.14 5.07 8.06 -2.91 -0.02 5.05 16 38 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.25 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -62.97 332.84 4.99 -57.98 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.07 Total: 15.39 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 5.91 Total: -3.04 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -3.99 Total: -109.71 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.03 Total: -5.80 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -62.97 4.99 -57.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332488136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.505 kcal (2) G-P(sol) polarization free energy of solvation -62.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds