Wall clock time and date at job start Tue Mar 31 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46576 * 166.43691 * 3 2 1 5 5 C 1.36925 * 119.99916 * 264.56237 * 4 3 2 6 6 H 1.07997 * 120.00281 * 135.36893 * 5 4 3 7 7 C 1.38808 * 120.00154 * 315.37340 * 5 4 3 8 8 N 1.31563 * 119.99634 * 347.59312 * 7 5 4 9 9 Si 1.86804 * 120.00082 * 167.59408 * 7 5 4 10 10 H 1.48501 * 109.46811 * 59.99783 * 9 7 5 11 11 H 1.48500 * 109.46950 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47001 * 300.00107 * 9 7 5 13 13 C 1.38226 * 120.00034 * 84.57285 * 4 3 2 14 14 N 1.31559 * 126.46034 * 1.13189 * 13 4 3 15 15 N 1.28415 * 110.50134 * 179.97438 * 14 13 4 16 16 N 1.28908 * 110.35092 * 359.70960 * 15 14 13 17 17 N 1.35439 * 126.45646 * 181.09804 * 13 4 3 18 18 C 1.46504 * 127.38397 * 0.03377 * 17 13 4 19 19 C 1.52996 * 109.47407 * 96.65540 * 18 17 13 20 20 H 1.09001 * 109.48138 * 58.63062 * 19 18 17 21 21 C 1.53089 * 109.48159 * 178.65722 * 19 18 17 22 22 C 1.53179 * 109.16176 * 177.59038 * 21 19 18 23 23 C 1.53174 * 109.03516 * 303.01617 * 22 21 19 24 24 C 1.53089 * 109.16342 * 56.98342 * 23 22 21 25 25 O 1.42901 * 109.42528 * 302.38569 * 24 23 22 26 26 H 4.40632 * 5.51440 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.46966 * 46.43958 * 3 2 1 28 28 H 1.09000 * 109.47168 * 286.43351 * 3 2 1 29 29 H 0.97003 * 119.99626 * 179.97438 * 8 7 5 30 30 H 1.08991 * 109.47144 * 336.64759 * 18 17 13 31 31 H 1.09005 * 109.46779 * 216.65199 * 18 17 13 32 32 H 1.08997 * 109.52599 * 57.68129 * 21 19 18 33 33 H 1.09006 * 109.57167 * 297.52732 * 21 19 18 34 34 H 1.09005 * 109.53725 * 183.15564 * 22 21 19 35 35 H 1.08995 * 109.54466 * 62.88901 * 22 21 19 36 36 H 1.08996 * 109.52717 * 297.07583 * 23 22 21 37 37 H 1.09004 * 109.51937 * 176.88975 * 23 22 21 38 38 H 1.09004 * 109.47914 * 62.37416 * 24 23 22 39 39 H 1.09007 * 109.48229 * 182.39404 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3437 -0.3239 5 6 3.4676 1.6580 -1.6141 6 1 3.1446 2.5953 -2.0424 7 6 4.2212 0.7720 -2.3715 8 7 4.8192 -0.2460 -1.7911 9 14 4.3864 1.0251 -4.2150 10 1 5.0124 2.3456 -4.4791 11 1 5.2370 -0.0489 -4.7878 12 1 3.0416 0.9803 -4.8431 13 6 3.2568 2.2933 0.6729 14 7 2.9939 2.1240 1.9508 15 7 3.2154 3.2079 2.6029 16 7 3.6342 4.1319 1.8077 17 7 3.6714 3.5734 0.5181 18 6 4.0775 4.2327 -0.7256 19 6 2.8939 5.0151 -1.2980 20 1 2.5564 5.7501 -0.5673 21 6 3.3273 5.7313 -2.5798 22 6 2.1223 6.4628 -3.1790 23 6 0.9984 5.4526 -3.4292 24 6 0.6549 4.7472 -2.1147 25 8 1.8257 4.1133 -1.5955 26 1 -1.0502 -0.0004 0.0003 27 1 3.0096 -0.7073 -0.7446 28 1 3.0095 -0.2899 0.9857 29 1 5.3456 -0.8654 -2.3205 30 1 4.3994 3.4814 -1.4467 31 1 4.9010 4.9171 -0.5218 32 1 3.7031 5.0007 -3.2961 33 1 4.1123 6.4512 -2.3482 34 1 2.4104 6.9286 -4.1215 35 1 1.7771 7.2276 -2.4833 36 1 1.3270 4.7163 -4.1627 37 1 0.1174 5.9735 -3.8042 38 1 0.2879 5.4787 -1.3947 39 1 -0.1150 3.9969 -2.2951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332546964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:00 Heat of formation + Delta-G solvation = 138.018657 kcal Electronic energy + Delta-G solvation = -24683.552211 eV Core-core repulsion = 21245.133596 eV Total energy + Delta-G solvation = -3438.418615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45168 -39.21427 -36.82186 -34.31853 -33.46577 -32.57741 -31.92229 -31.05396 -29.61975 -27.24019 -26.75294 -24.63065 -23.89533 -22.67490 -21.24012 -20.64290 -20.09538 -18.08628 -17.40486 -16.34023 -16.05052 -15.61706 -15.59507 -15.24823 -14.69611 -14.43535 -14.28398 -13.86162 -13.48527 -13.20502 -12.72447 -12.51807 -12.31488 -12.25104 -11.78795 -11.67041 -11.39065 -11.25162 -11.17696 -11.05080 -10.85608 -10.74020 -10.52694 -10.29502 -9.80919 -9.64739 -9.53722 -9.26752 -9.21849 -9.06204 -8.91696 -7.19901 -6.57424 -4.32657 2.46846 2.86487 3.00230 3.08014 3.10854 3.54700 3.69018 3.77995 3.94554 4.01979 4.66170 4.75470 4.82934 4.89361 4.91396 5.11681 5.28012 5.29954 5.38794 5.45785 5.57889 5.69254 5.77504 5.85708 5.93352 6.01927 6.05950 6.12322 6.22151 6.34380 6.44121 6.70468 6.82359 6.83591 6.88179 7.23375 7.38292 7.54473 7.99894 8.37151 8.42797 8.94548 9.28184 9.98428 10.44139 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.009148 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.792608 B = 3060.155617 C = 4073.290380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.158 4.158 3 C 0.237 3.763 4 N -0.396 5.396 5 C -0.334 4.334 6 H 0.116 0.884 7 C 0.043 3.957 8 N -0.862 5.862 9 Si 0.921 3.079 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.501 3.499 14 N -0.417 5.417 15 N -0.038 5.038 16 N -0.156 5.156 17 N -0.419 5.419 18 C 0.128 3.872 19 C 0.076 3.924 20 H 0.058 0.942 21 C -0.149 4.149 22 C -0.118 4.118 23 C -0.156 4.156 24 C 0.061 3.939 25 O -0.350 6.350 26 H 0.206 0.794 27 H 0.129 0.871 28 H 0.085 0.915 29 H 0.275 0.725 30 H 0.142 0.858 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 7.547 -6.788 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.159 4.159 3 C 0.114 3.886 4 N -0.101 5.101 5 C -0.462 4.462 6 H 0.133 0.867 7 C -0.165 4.165 8 N -0.497 5.497 9 Si 0.746 3.254 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.194 1.194 13 C 0.141 3.859 14 N -0.288 5.288 15 N -0.034 5.034 16 N -0.145 5.145 17 N -0.222 5.222 18 C 0.005 3.995 19 C 0.016 3.984 20 H 0.076 0.924 21 C -0.188 4.188 22 C -0.156 4.156 23 C -0.194 4.194 24 C -0.016 4.016 25 O -0.269 6.269 26 H 0.223 0.777 27 H 0.146 0.854 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.159 0.841 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.586 7.459 -5.647 10.019 hybrid contribution -0.098 0.343 -2.067 2.097 sum -3.683 7.803 -7.713 11.573 Atomic orbital electron populations 1.24576 0.95607 1.01748 1.04574 1.24322 0.95464 0.98845 0.97312 1.18492 0.81544 0.85709 1.02894 1.41131 1.58877 1.07146 1.02973 1.19920 1.32160 1.08449 0.85659 0.86749 1.25623 0.93854 0.96435 1.00572 1.69900 1.28626 1.14563 1.36593 0.86082 0.78769 0.78494 0.82035 1.19407 1.20622 1.19422 1.22054 0.90882 0.83695 0.89286 1.74649 1.34933 1.18891 1.00296 1.77475 1.07074 0.94983 1.23910 1.82102 1.28259 1.19105 0.85071 1.50344 1.55547 1.08558 1.07765 1.22309 0.94783 0.98966 0.83440 1.22484 0.88919 0.91816 0.95139 0.92442 1.22151 0.98389 1.00227 0.97985 1.21539 0.95462 0.97685 1.00872 1.22198 0.98898 0.99116 0.99163 1.22499 0.88554 0.97152 0.93373 1.88200 1.22777 1.32248 1.83640 0.77695 0.85403 0.89747 0.91488 0.84084 0.89072 0.90353 0.90738 0.91578 0.92065 0.90836 0.91363 0.93988 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.75 19.25 29.55 0.57 -4.18 16 2 C -0.16 -3.44 13.64 -37.12 -0.51 -3.95 16 3 C 0.24 5.44 5.50 -6.83 -0.04 5.40 16 4 N -0.40 -9.54 2.53 -119.72 -0.30 -9.84 16 5 C -0.33 -7.79 6.92 -15.07 -0.10 -7.89 16 6 H 0.12 2.58 3.53 -52.49 -0.19 2.39 16 7 C 0.04 0.99 5.06 -17.46 -0.09 0.90 16 8 N -0.86 -20.88 11.52 55.49 0.64 -20.24 16 9 Si 0.92 17.99 29.57 -169.99 -5.03 12.96 16 10 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 11 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 13 C 0.50 12.31 8.34 -320.36 -2.67 9.64 16 14 N -0.42 -10.62 11.64 30.10 0.35 -10.27 16 15 N -0.04 -0.95 13.38 60.35 0.81 -0.14 16 16 N -0.16 -3.63 13.93 60.35 0.84 -2.79 16 17 N -0.42 -9.41 3.58 -61.85 -0.22 -9.63 16 18 C 0.13 2.36 5.55 -4.04 -0.02 2.34 16 19 C 0.08 1.23 2.79 -26.69 -0.07 1.16 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 21 C -0.15 -1.89 5.42 -26.59 -0.14 -2.04 16 22 C -0.12 -1.31 6.03 -26.55 -0.16 -1.47 16 23 C -0.16 -1.85 6.14 -26.60 -0.16 -2.01 16 24 C 0.06 0.89 6.84 37.20 0.25 1.15 16 25 O -0.35 -6.43 8.09 -35.23 -0.29 -6.72 16 26 H 0.21 3.05 7.80 -54.08 -0.42 2.63 16 27 H 0.13 3.01 5.82 -51.93 -0.30 2.71 16 28 H 0.08 1.94 7.82 -51.93 -0.41 1.53 16 29 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 30 H 0.14 2.78 4.77 -51.93 -0.25 2.53 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -28.47 326.51 -6.35 -34.83 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.93 Total: 7.89 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.15 Total: -0.97 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 2.11 Total: -52.91 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.29 Total: -6.72 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.47 -6.35 -34.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332546964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.845 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds