Wall clock time and date at job start Tue Mar 31 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46576 * 166.43691 * 3 2 1 5 5 C 1.36925 * 119.99916 * 264.56237 * 4 3 2 6 6 H 1.07997 * 120.00281 * 135.36893 * 5 4 3 7 7 C 1.38808 * 120.00154 * 315.37340 * 5 4 3 8 8 N 1.31563 * 119.99634 * 347.59312 * 7 5 4 9 9 Si 1.86804 * 120.00082 * 167.59408 * 7 5 4 10 10 H 1.48501 * 109.46811 * 59.99783 * 9 7 5 11 11 H 1.48500 * 109.46950 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47001 * 300.00107 * 9 7 5 13 13 C 1.38226 * 120.00034 * 84.57285 * 4 3 2 14 14 N 1.31559 * 126.46034 * 1.13189 * 13 4 3 15 15 N 1.28415 * 110.50134 * 179.97438 * 14 13 4 16 16 N 1.28908 * 110.35092 * 359.70960 * 15 14 13 17 17 N 1.35439 * 126.45646 * 181.09804 * 13 4 3 18 18 C 1.46504 * 127.38397 * 0.03377 * 17 13 4 19 19 C 1.52996 * 109.47407 * 96.65540 * 18 17 13 20 20 H 1.09001 * 109.48138 * 58.63062 * 19 18 17 21 21 C 1.53089 * 109.48159 * 178.65722 * 19 18 17 22 22 C 1.53179 * 109.16176 * 177.59038 * 21 19 18 23 23 C 1.53174 * 109.03516 * 303.01617 * 22 21 19 24 24 C 1.53089 * 109.16342 * 56.98342 * 23 22 21 25 25 O 1.42901 * 109.42528 * 302.38569 * 24 23 22 26 26 H 4.40632 * 5.51440 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.46966 * 46.43958 * 3 2 1 28 28 H 1.09000 * 109.47168 * 286.43351 * 3 2 1 29 29 H 0.97003 * 119.99626 * 179.97438 * 8 7 5 30 30 H 1.08991 * 109.47144 * 336.64759 * 18 17 13 31 31 H 1.09005 * 109.46779 * 216.65199 * 18 17 13 32 32 H 1.08997 * 109.52599 * 57.68129 * 21 19 18 33 33 H 1.09006 * 109.57167 * 297.52732 * 21 19 18 34 34 H 1.09005 * 109.53725 * 183.15564 * 22 21 19 35 35 H 1.08995 * 109.54466 * 62.88901 * 22 21 19 36 36 H 1.08996 * 109.52717 * 297.07583 * 23 22 21 37 37 H 1.09004 * 109.51937 * 176.88975 * 23 22 21 38 38 H 1.09004 * 109.47914 * 62.37416 * 24 23 22 39 39 H 1.09007 * 109.48229 * 182.39404 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3437 -0.3239 5 6 3.4676 1.6580 -1.6141 6 1 3.1446 2.5953 -2.0424 7 6 4.2212 0.7720 -2.3715 8 7 4.8192 -0.2460 -1.7911 9 14 4.3864 1.0251 -4.2150 10 1 5.0124 2.3456 -4.4791 11 1 5.2370 -0.0489 -4.7878 12 1 3.0416 0.9803 -4.8431 13 6 3.2568 2.2933 0.6729 14 7 2.9939 2.1240 1.9508 15 7 3.2154 3.2079 2.6029 16 7 3.6342 4.1319 1.8077 17 7 3.6714 3.5734 0.5181 18 6 4.0775 4.2327 -0.7256 19 6 2.8939 5.0151 -1.2980 20 1 2.5564 5.7501 -0.5673 21 6 3.3273 5.7313 -2.5798 22 6 2.1223 6.4628 -3.1790 23 6 0.9984 5.4526 -3.4292 24 6 0.6549 4.7472 -2.1147 25 8 1.8257 4.1133 -1.5955 26 1 -1.0502 -0.0004 0.0003 27 1 3.0096 -0.7073 -0.7446 28 1 3.0095 -0.2899 0.9857 29 1 5.3456 -0.8654 -2.3205 30 1 4.3994 3.4814 -1.4467 31 1 4.9010 4.9171 -0.5218 32 1 3.7031 5.0007 -3.2961 33 1 4.1123 6.4512 -2.3482 34 1 2.4104 6.9286 -4.1215 35 1 1.7771 7.2276 -2.4833 36 1 1.3270 4.7163 -4.1627 37 1 0.1174 5.9735 -3.8042 38 1 0.2879 5.4787 -1.3947 39 1 -0.1150 3.9969 -2.2951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332546964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:59 Heat of formation + Delta-G solvation = 123.562684 kcal Electronic energy + Delta-G solvation = -24684.179069 eV Core-core repulsion = 21245.133596 eV Total energy + Delta-G solvation = -3439.045473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.28906 -40.41187 -38.59600 -35.88323 -34.53561 -34.31502 -33.61026 -32.45311 -31.44243 -28.71721 -28.42140 -26.20710 -25.21854 -24.09227 -22.81463 -22.39300 -21.18318 -19.80245 -19.06436 -17.83260 -17.46900 -17.31149 -17.08324 -16.72748 -16.36779 -15.63438 -15.46625 -15.39339 -15.13286 -14.43372 -14.18979 -14.04868 -13.65542 -13.54170 -13.44523 -13.39511 -13.08617 -12.80367 -12.55359 -12.22174 -12.17627 -12.07794 -11.84572 -11.54514 -11.47825 -11.36170 -11.19025 -10.97688 -10.80267 -10.65325 -10.33146 -9.02104 -8.34118 -6.14544 0.63229 1.16098 1.44667 1.49720 1.57314 1.86155 1.96635 2.05067 2.30888 2.78151 2.92874 3.08370 3.71413 3.73418 3.84614 3.92293 3.92652 4.05393 4.14669 4.27473 4.30254 4.46948 4.57788 4.64550 4.71708 4.85874 4.92187 4.96597 5.04461 5.05423 5.10371 5.15747 5.17284 5.17889 5.39636 5.50937 5.64610 6.21386 6.34013 6.58123 6.81130 7.15068 7.47510 8.11671 8.68413 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.009148 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.792608 B = 3060.155617 C = 4073.290380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.218 4.218 3 C 0.243 3.757 4 N -0.400 5.400 5 C -0.342 4.342 6 H 0.124 0.876 7 C 0.007 3.993 8 N -0.892 5.892 9 Si 0.979 3.021 10 H -0.250 1.250 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.483 3.517 14 N -0.440 5.440 15 N -0.054 5.054 16 N -0.151 5.151 17 N -0.414 5.414 18 C 0.118 3.882 19 C 0.081 3.919 20 H 0.051 0.949 21 C -0.144 4.144 22 C -0.115 4.115 23 C -0.150 4.150 24 C 0.054 3.946 25 O -0.387 6.387 26 H 0.250 0.750 27 H 0.116 0.884 28 H 0.071 0.929 29 H 0.276 0.724 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 9.339 -8.852 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.219 4.219 3 C 0.120 3.880 4 N -0.106 5.106 5 C -0.470 4.470 6 H 0.141 0.859 7 C -0.198 4.198 8 N -0.528 5.528 9 Si 0.801 3.199 10 H -0.174 1.174 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.122 3.878 14 N -0.310 5.310 15 N -0.050 5.050 16 N -0.141 5.141 17 N -0.218 5.218 18 C -0.003 4.003 19 C 0.022 3.978 20 H 0.069 0.931 21 C -0.182 4.182 22 C -0.152 4.152 23 C -0.187 4.187 24 C -0.022 4.022 25 O -0.306 6.306 26 H 0.267 0.733 27 H 0.134 0.866 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.400 9.273 -7.714 12.840 hybrid contribution 0.094 -0.221 -1.390 1.410 sum -4.305 9.053 -9.104 13.542 Atomic orbital electron populations 1.25552 0.96449 0.98802 1.01509 1.24344 0.95890 1.01582 1.00113 1.18237 0.82887 0.85185 1.01671 1.41366 1.58853 1.07227 1.03152 1.20253 1.32284 1.09045 0.85418 0.85905 1.26383 0.93208 0.95903 1.04271 1.70010 1.29376 1.15381 1.38066 0.85190 0.78558 0.79099 0.77032 1.17408 1.20907 1.19484 1.22205 0.91630 0.84683 0.89259 1.74555 1.35828 1.19521 1.01134 1.77430 1.08066 0.95119 1.24351 1.81975 1.27515 1.19003 0.85561 1.50579 1.54767 1.08075 1.08379 1.22646 0.96907 0.99130 0.81655 1.22454 0.87659 0.90978 0.96694 0.93055 1.22143 0.99853 1.00355 0.95843 1.21562 0.94249 0.97351 1.02054 1.22152 1.00311 0.99083 0.97196 1.22668 0.87404 0.97260 0.94868 1.88129 1.24187 1.34058 1.84272 0.73338 0.86618 0.91111 0.91457 0.85363 0.86467 0.90966 0.88439 0.89252 0.91284 0.91653 0.88970 0.93708 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.57 19.25 74.32 1.43 -6.14 16 2 C -0.22 -9.59 13.64 31.12 0.42 -9.16 16 3 C 0.24 11.62 5.50 84.57 0.46 12.08 16 4 N -0.40 -19.74 2.53 -532.68 -1.35 -21.09 16 5 C -0.34 -16.10 6.92 84.03 0.58 -15.52 16 6 H 0.12 5.51 3.53 -2.91 -0.01 5.50 16 7 C 0.01 0.32 5.06 84.87 0.43 0.75 16 8 N -0.89 -44.09 11.52 21.65 0.25 -43.84 16 9 Si 0.98 36.17 29.57 68.60 2.03 38.20 16 10 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 11 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 12 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 13 C 0.48 24.21 8.34 260.63 2.17 26.38 16 14 N -0.44 -22.93 11.64 -58.67 -0.68 -23.62 16 15 N -0.05 -2.69 13.38 37.02 0.50 -2.19 16 16 N -0.15 -7.05 13.93 37.02 0.52 -6.53 16 17 N -0.41 -18.65 3.58 -349.59 -1.25 -19.90 16 18 C 0.12 4.25 5.55 86.38 0.48 4.73 16 19 C 0.08 2.52 2.79 30.62 0.09 2.60 16 20 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 21 C -0.14 -3.23 5.42 30.68 0.17 -3.07 16 22 C -0.11 -2.13 6.03 30.71 0.19 -1.94 16 23 C -0.15 -3.13 6.14 30.68 0.19 -2.94 16 24 C 0.05 1.50 6.84 72.01 0.49 2.00 16 25 O -0.39 -13.90 8.09 -148.98 -1.21 -15.11 16 26 H 0.25 6.47 7.80 -4.41 -0.03 6.43 16 27 H 0.12 5.72 5.82 -2.39 -0.01 5.70 16 28 H 0.07 3.45 7.82 -2.39 -0.02 3.43 16 29 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 30 H 0.13 5.00 4.77 -2.39 -0.01 4.99 16 31 H 0.12 3.50 8.14 -2.38 -0.02 3.48 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -62.46 326.51 6.97 -55.49 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 1.07 Total: 28.83 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 7.10 Total: 9.78 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -2.02 Total: -117.18 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -1.21 Total: -15.11 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -62.46 6.97 -55.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332546964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.048 kcal (2) G-P(sol) polarization free energy of solvation -62.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds