Wall clock time and date at job start Tue Mar 31 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47236 * 156.24468 * 3 2 1 5 5 C 1.36923 * 120.00425 * 270.00157 * 4 3 2 6 6 H 1.08006 * 119.99443 * 351.87505 * 5 4 3 7 7 C 1.38800 * 120.00577 * 171.87921 * 5 4 3 8 8 N 1.31568 * 119.99495 * 5.22488 * 7 5 4 9 9 Si 1.86797 * 120.00030 * 185.21947 * 7 5 4 10 10 H 1.48499 * 109.47006 * 65.00384 * 9 7 5 11 11 H 1.48500 * 109.46968 * 185.00413 * 9 7 5 12 12 H 1.48504 * 109.47104 * 305.00086 * 9 7 5 13 13 C 1.38231 * 119.99619 * 89.99627 * 4 3 2 14 14 N 1.31571 * 126.45882 * 269.00629 * 13 4 3 15 15 N 1.28417 * 110.49638 * 180.02562 * 14 13 4 16 16 N 1.28911 * 110.35421 * 359.71133 * 15 14 13 17 17 N 1.35431 * 126.45696 * 89.05925 * 13 4 3 18 18 C 1.46509 * 127.38761 * 359.95374 * 17 13 4 19 19 C 1.53001 * 109.46805 * 95.44337 * 18 17 13 20 20 H 1.09000 * 109.48151 * 303.45569 * 19 18 17 21 21 C 1.53092 * 109.48192 * 183.43243 * 19 18 17 22 22 C 1.53175 * 109.16545 * 182.40727 * 21 19 18 23 23 C 1.53171 * 109.03645 * 56.98275 * 22 21 19 24 24 C 1.53098 * 109.16297 * 303.02079 * 23 22 21 25 25 O 1.42899 * 109.41396 * 57.60584 * 24 23 22 26 26 H 4.40643 * 5.51509 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.47303 * 36.24289 * 3 2 1 28 28 H 1.09008 * 109.47299 * 276.24325 * 3 2 1 29 29 H 0.96998 * 119.99563 * 185.03181 * 8 7 5 30 30 H 1.08997 * 109.47038 * 215.44088 * 18 17 13 31 31 H 1.08994 * 109.47004 * 335.44563 * 18 17 13 32 32 H 1.08999 * 109.52140 * 302.31556 * 21 19 18 33 33 H 1.09003 * 109.51675 * 62.43821 * 21 19 18 34 34 H 1.08995 * 109.54099 * 176.84978 * 22 21 19 35 35 H 1.09005 * 109.54100 * 297.02738 * 22 21 19 36 36 H 1.08998 * 109.52650 * 62.92369 * 23 22 21 37 37 H 1.09005 * 109.52404 * 183.05244 * 23 22 21 38 38 H 1.08999 * 109.48258 * 177.59323 * 24 23 22 39 39 H 1.09001 * 109.47904 * 297.60991 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.2651 -0.5564 5 6 3.3619 1.3784 -1.9017 6 1 3.3096 0.5041 -2.5338 7 6 3.6605 2.6166 -2.4533 8 7 3.8257 3.6621 -1.6718 9 14 3.8279 2.7985 -4.3048 10 1 2.5170 2.5307 -4.9490 11 1 4.2658 4.1800 -4.6289 12 1 4.8341 1.8293 -4.8084 13 6 3.3635 2.3438 0.2769 14 7 2.5012 3.2863 0.5916 15 7 3.0378 4.1392 1.3877 16 7 4.2578 3.8094 1.6418 17 7 4.5192 2.6302 0.9224 18 6 5.7712 1.8703 0.8846 19 6 6.7015 2.4724 -0.1704 20 1 6.1964 2.4844 -1.1362 21 6 7.9744 1.6278 -0.2704 22 6 8.9258 2.2703 -1.2844 23 6 9.2167 3.7111 -0.8533 24 6 7.8958 4.4753 -0.7307 25 8 7.0458 3.8078 0.2042 26 1 -1.0503 -0.0004 0.0000 27 1 3.0097 -0.8280 -0.6076 28 1 3.0094 -0.1109 1.0216 29 1 3.9618 4.5407 -2.0597 30 1 6.2527 1.9146 1.8614 31 1 5.5583 0.8318 0.6311 32 1 8.4586 1.5818 0.7050 33 1 7.7181 0.6202 -0.5978 34 1 9.8571 1.7051 -1.3194 35 1 8.4618 2.2701 -2.2708 36 1 9.7260 3.7072 0.1104 37 1 9.8499 4.1934 -1.5980 38 1 8.0933 5.4892 -0.3828 39 1 7.4065 4.5139 -1.7040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332546965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:14 Heat of formation + Delta-G solvation = 148.363226 kcal Electronic energy + Delta-G solvation = -24655.448099 eV Core-core repulsion = 21217.478059 eV Total energy + Delta-G solvation = -3437.970041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 6.70 seconds Orbital eigenvalues (eV) -41.16203 -38.98066 -36.55355 -34.09803 -33.31069 -32.81091 -31.31775 -30.83159 -29.66549 -27.06854 -26.46002 -24.37483 -23.79532 -22.55454 -21.03619 -20.52356 -19.98605 -17.86827 -17.74912 -15.96856 -15.92270 -15.81998 -15.44221 -14.64493 -14.42998 -14.24011 -14.10923 -13.81053 -13.63782 -13.09931 -12.72537 -12.57268 -12.39479 -12.18699 -11.55588 -11.36698 -11.22456 -11.01397 -10.91138 -10.82324 -10.67206 -10.57635 -10.40134 -10.07731 -9.77620 -9.55715 -9.51697 -9.21558 -8.96683 -8.83486 -8.45499 -7.74278 -6.13034 -3.74774 2.62811 3.03887 3.17596 3.27148 3.27944 3.50794 3.55213 4.08711 4.17087 4.25788 4.81595 4.91818 4.97719 4.99145 5.01247 5.17727 5.23618 5.37198 5.47861 5.59343 5.69751 5.76223 5.83549 5.89341 6.00139 6.04415 6.05504 6.07523 6.24429 6.29350 6.50480 6.54478 6.73778 6.99370 7.04089 7.35871 7.43173 7.71377 7.96562 8.30986 8.81620 9.26802 9.63515 10.23017 10.87308 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.007440 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.167465 B = 3762.691410 C = 4434.266773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.254 3.746 4 N -0.510 5.510 5 C -0.289 4.289 6 H 0.098 0.902 7 C 0.016 3.984 8 N -0.878 5.878 9 Si 0.918 3.082 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.578 3.422 14 N -0.337 5.337 15 N -0.066 5.066 16 N -0.115 5.115 17 N -0.385 5.385 18 C 0.152 3.848 19 C 0.081 3.919 20 H 0.087 0.913 21 C -0.148 4.148 22 C -0.119 4.119 23 C -0.155 4.155 24 C 0.066 3.934 25 O -0.359 6.359 26 H 0.207 0.793 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.271 0.729 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -7.092 1.264 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.184 4.184 3 C 0.128 3.872 4 N -0.231 5.231 5 C -0.416 4.416 6 H 0.116 0.884 7 C -0.186 4.186 8 N -0.519 5.519 9 Si 0.746 3.254 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.205 1.205 13 C 0.215 3.785 14 N -0.194 5.194 15 N -0.063 5.063 16 N -0.102 5.102 17 N -0.187 5.187 18 C 0.027 3.973 19 C 0.022 3.978 20 H 0.105 0.895 21 C -0.186 4.186 22 C -0.156 4.156 23 C -0.192 4.192 24 C -0.012 4.012 25 O -0.277 6.277 26 H 0.224 0.776 27 H 0.111 0.889 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.579 -5.656 1.997 10.468 hybrid contribution 0.488 -0.482 -1.969 2.085 sum 9.067 -6.138 0.028 10.949 Atomic orbital electron populations 1.24705 0.95763 1.01380 1.02393 1.24434 0.95714 0.99343 0.98911 1.18052 0.83154 0.87834 0.98151 1.40549 1.72543 1.06142 1.03837 1.19319 1.46265 0.95285 0.80711 0.88450 1.24997 0.99192 0.95306 0.99075 1.69203 1.49468 0.99555 1.33634 0.86119 0.78362 0.77165 0.83757 1.20422 1.21341 1.20467 1.20410 0.82391 0.88662 0.87033 1.74705 1.27557 1.02000 1.15160 1.77642 1.01055 1.18454 1.09130 1.82169 1.11464 0.97773 1.18771 1.51794 1.10890 1.20094 1.35906 1.21442 0.81911 0.94215 0.99759 1.22437 0.93001 0.82823 0.99587 0.89471 1.22167 0.96731 0.99744 0.99985 1.21525 0.99197 0.95762 0.99146 1.22201 0.98690 0.96534 1.01805 1.22415 0.89271 0.95668 0.93807 1.88018 1.67475 1.26140 1.46074 0.77561 0.88937 0.91222 0.91664 0.89662 0.88102 0.91387 0.90751 0.91863 0.91762 0.91400 0.91511 0.89605 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.99 19.25 29.55 0.57 -3.42 16 2 C -0.18 -3.52 13.68 -37.13 -0.51 -4.03 16 3 C 0.25 4.62 6.12 -6.83 -0.04 4.58 16 4 N -0.51 -11.56 2.58 -119.72 -0.31 -11.87 16 5 C -0.29 -6.92 9.78 -15.07 -0.15 -7.07 16 6 H 0.10 2.18 7.82 -52.48 -0.41 1.77 16 7 C 0.02 0.40 5.27 -17.46 -0.09 0.31 16 8 N -0.88 -23.82 9.84 55.49 0.55 -23.27 16 9 Si 0.92 20.29 29.56 -169.99 -5.02 15.26 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.58 14.18 4.84 -320.34 -1.55 12.63 16 14 N -0.34 -9.21 11.40 30.11 0.34 -8.87 16 15 N -0.07 -1.78 13.38 60.35 0.81 -0.97 16 16 N -0.11 -2.86 13.93 60.35 0.84 -2.02 16 17 N -0.38 -8.70 3.51 -61.84 -0.22 -8.91 16 18 C 0.15 2.70 6.19 -4.04 -0.02 2.67 16 19 C 0.08 1.43 2.89 -26.68 -0.08 1.35 16 20 H 0.09 1.87 7.76 -51.93 -0.40 1.46 16 21 C -0.15 -1.97 5.42 -26.59 -0.14 -2.11 16 22 C -0.12 -1.48 6.03 -26.55 -0.16 -1.64 16 23 C -0.15 -1.95 6.14 -26.59 -0.16 -2.11 16 24 C 0.07 1.06 6.84 37.21 0.25 1.31 16 25 O -0.36 -6.93 10.33 -35.23 -0.36 -7.30 16 26 H 0.21 2.87 7.80 -54.08 -0.42 2.45 16 27 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 28 H 0.07 1.13 8.04 -51.92 -0.42 0.71 16 29 H 0.27 7.57 8.32 -40.82 -0.34 7.23 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -31.92 337.44 -5.81 -37.73 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.43 Total: 2.67 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.09 Total: 2.47 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 2.01 Total: -55.92 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.36 Total: -7.30 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.92 -5.81 -37.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332546965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.089 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.70 seconds