Wall clock time and date at job start Tue Mar 31 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47236 * 156.24468 * 3 2 1 5 5 C 1.36923 * 120.00425 * 270.00157 * 4 3 2 6 6 H 1.08006 * 119.99443 * 351.87505 * 5 4 3 7 7 C 1.38800 * 120.00577 * 171.87921 * 5 4 3 8 8 N 1.31568 * 119.99495 * 5.22488 * 7 5 4 9 9 Si 1.86797 * 120.00030 * 185.21947 * 7 5 4 10 10 H 1.48499 * 109.47006 * 65.00384 * 9 7 5 11 11 H 1.48500 * 109.46968 * 185.00413 * 9 7 5 12 12 H 1.48504 * 109.47104 * 305.00086 * 9 7 5 13 13 C 1.38231 * 119.99619 * 89.99627 * 4 3 2 14 14 N 1.31571 * 126.45882 * 269.00629 * 13 4 3 15 15 N 1.28417 * 110.49638 * 180.02562 * 14 13 4 16 16 N 1.28911 * 110.35421 * 359.71133 * 15 14 13 17 17 N 1.35431 * 126.45696 * 89.05925 * 13 4 3 18 18 C 1.46509 * 127.38761 * 359.95374 * 17 13 4 19 19 C 1.53001 * 109.46805 * 95.44337 * 18 17 13 20 20 H 1.09000 * 109.48151 * 303.45569 * 19 18 17 21 21 C 1.53092 * 109.48192 * 183.43243 * 19 18 17 22 22 C 1.53175 * 109.16545 * 182.40727 * 21 19 18 23 23 C 1.53171 * 109.03645 * 56.98275 * 22 21 19 24 24 C 1.53098 * 109.16297 * 303.02079 * 23 22 21 25 25 O 1.42899 * 109.41396 * 57.60584 * 24 23 22 26 26 H 4.40643 * 5.51509 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.47303 * 36.24289 * 3 2 1 28 28 H 1.09008 * 109.47299 * 276.24325 * 3 2 1 29 29 H 0.96998 * 119.99563 * 185.03181 * 8 7 5 30 30 H 1.08997 * 109.47038 * 215.44088 * 18 17 13 31 31 H 1.08994 * 109.47004 * 335.44563 * 18 17 13 32 32 H 1.08999 * 109.52140 * 302.31556 * 21 19 18 33 33 H 1.09003 * 109.51675 * 62.43821 * 21 19 18 34 34 H 1.08995 * 109.54099 * 176.84978 * 22 21 19 35 35 H 1.09005 * 109.54100 * 297.02738 * 22 21 19 36 36 H 1.08998 * 109.52650 * 62.92369 * 23 22 21 37 37 H 1.09005 * 109.52404 * 183.05244 * 23 22 21 38 38 H 1.08999 * 109.48258 * 177.59323 * 24 23 22 39 39 H 1.09001 * 109.47904 * 297.60991 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.2651 -0.5564 5 6 3.3619 1.3784 -1.9017 6 1 3.3096 0.5041 -2.5338 7 6 3.6605 2.6166 -2.4533 8 7 3.8257 3.6621 -1.6718 9 14 3.8279 2.7985 -4.3048 10 1 2.5170 2.5307 -4.9490 11 1 4.2658 4.1800 -4.6289 12 1 4.8341 1.8293 -4.8084 13 6 3.3635 2.3438 0.2769 14 7 2.5012 3.2863 0.5916 15 7 3.0378 4.1392 1.3877 16 7 4.2578 3.8094 1.6418 17 7 4.5192 2.6302 0.9224 18 6 5.7712 1.8703 0.8846 19 6 6.7015 2.4724 -0.1704 20 1 6.1964 2.4844 -1.1362 21 6 7.9744 1.6278 -0.2704 22 6 8.9258 2.2703 -1.2844 23 6 9.2167 3.7111 -0.8533 24 6 7.8958 4.4753 -0.7307 25 8 7.0458 3.8078 0.2042 26 1 -1.0503 -0.0004 0.0000 27 1 3.0097 -0.8280 -0.6076 28 1 3.0094 -0.1109 1.0216 29 1 3.9618 4.5407 -2.0597 30 1 6.2527 1.9146 1.8614 31 1 5.5583 0.8318 0.6311 32 1 8.4586 1.5818 0.7050 33 1 7.7181 0.6202 -0.5978 34 1 9.8571 1.7051 -1.3194 35 1 8.4618 2.2701 -2.2708 36 1 9.7260 3.7072 0.1104 37 1 9.8499 4.1934 -1.5980 38 1 8.0933 5.4892 -0.3828 39 1 7.4065 4.5139 -1.7040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332546965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:07 Heat of formation + Delta-G solvation = 128.707174 kcal Electronic energy + Delta-G solvation = -24656.300450 eV Core-core repulsion = 21217.478059 eV Total energy + Delta-G solvation = -3438.822391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 4.77 seconds Orbital eigenvalues (eV) -43.04038 -40.26733 -38.26333 -35.67212 -34.48439 -34.44223 -33.00222 -32.33421 -31.48889 -28.49055 -28.09110 -26.00719 -25.17512 -24.02952 -22.75552 -22.28147 -21.12837 -19.65750 -19.20200 -17.57797 -17.47658 -17.19755 -16.92845 -16.31727 -16.13479 -15.58160 -15.42525 -15.27757 -15.24921 -14.33423 -14.28299 -14.02195 -13.62698 -13.46300 -13.29625 -13.04329 -12.93462 -12.65550 -12.42944 -12.20266 -12.17680 -11.98898 -11.82993 -11.43494 -11.31798 -11.26093 -11.07194 -10.91465 -10.62038 -10.39152 -10.23251 -9.58590 -8.04669 -5.65424 0.77468 1.36586 1.41761 1.48226 1.51887 1.97617 2.08908 2.21156 2.46796 2.86627 3.17913 3.22898 3.73493 3.75364 3.91945 3.93305 3.97523 4.07167 4.29885 4.34516 4.42839 4.46817 4.62960 4.70035 4.74842 4.88401 4.91025 4.99694 5.05562 5.09944 5.12098 5.15817 5.23622 5.27627 5.41193 5.49716 5.67650 6.07879 6.39800 6.88428 6.92617 7.48894 7.77225 8.29968 8.92554 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.007440 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.167465 B = 3762.691410 C = 4434.266773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.224 4.224 3 C 0.247 3.753 4 N -0.517 5.517 5 C -0.278 4.278 6 H 0.117 0.883 7 C -0.033 4.033 8 N -0.904 5.904 9 Si 0.972 3.028 10 H -0.282 1.282 11 H -0.308 1.308 12 H -0.258 1.258 13 C 0.576 3.424 14 N -0.375 5.375 15 N -0.090 5.090 16 N -0.123 5.123 17 N -0.374 5.374 18 C 0.139 3.861 19 C 0.085 3.915 20 H 0.045 0.955 21 C -0.138 4.138 22 C -0.119 4.119 23 C -0.144 4.144 24 C 0.060 3.940 25 O -0.389 6.389 26 H 0.239 0.761 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.250 0.750 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.451 -9.619 1.045 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.227 4.227 3 C 0.124 3.876 4 N -0.238 5.238 5 C -0.405 4.405 6 H 0.134 0.866 7 C -0.231 4.231 8 N -0.547 5.547 9 Si 0.800 3.200 10 H -0.209 1.209 11 H -0.236 1.236 12 H -0.182 1.182 13 C 0.213 3.787 14 N -0.234 5.234 15 N -0.086 5.086 16 N -0.111 5.111 17 N -0.176 5.176 18 C 0.016 3.984 19 C 0.026 3.974 20 H 0.063 0.937 21 C -0.177 4.177 22 C -0.156 4.156 23 C -0.182 4.182 24 C -0.017 4.017 25 O -0.308 6.308 26 H 0.255 0.745 27 H 0.142 0.858 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.125 0.875 31 H 0.145 0.855 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.143 -8.247 1.779 13.193 hybrid contribution -0.028 0.244 -1.877 1.893 sum 10.114 -8.003 -0.098 12.898 Atomic orbital electron populations 1.25600 0.96874 0.99705 1.01064 1.24848 0.96697 1.00842 1.00284 1.18417 0.82883 0.86588 0.99732 1.40843 1.72873 1.06724 1.03398 1.19732 1.43799 0.95442 0.81567 0.86561 1.25634 0.99984 0.95402 1.02050 1.69403 1.51932 0.98986 1.34360 0.85255 0.78297 0.76265 0.80207 1.20867 1.23552 1.18215 1.20439 0.82562 0.88670 0.87015 1.74567 1.29492 1.03154 1.16165 1.77571 1.01790 1.19196 1.10086 1.82016 1.11016 0.98799 1.19222 1.51898 1.11881 1.19159 1.34682 1.21993 0.80243 0.94884 1.01294 1.22365 0.94773 0.83157 0.97136 0.93691 1.22125 0.94549 0.99576 1.01411 1.21567 1.00217 0.95857 0.98000 1.22129 0.96555 0.96379 1.03126 1.22541 0.90619 0.96588 0.91918 1.87960 1.68542 1.27339 1.46998 0.74471 0.85795 0.89399 0.93884 0.87465 0.85512 0.89513 0.88969 0.88714 0.93272 0.90158 0.89597 0.89196 0.96259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.22 19.25 74.32 1.43 -5.79 16 2 C -0.22 -8.33 13.68 31.12 0.43 -7.90 16 3 C 0.25 8.50 6.12 84.57 0.52 9.02 16 4 N -0.52 -22.89 2.58 -532.67 -1.37 -24.27 16 5 C -0.28 -13.00 9.78 84.03 0.82 -12.18 16 6 H 0.12 4.92 7.82 -2.91 -0.02 4.90 16 7 C -0.03 -1.67 5.27 84.87 0.45 -1.23 16 8 N -0.90 -50.61 9.84 21.65 0.21 -50.39 16 9 Si 0.97 42.09 29.56 68.60 2.03 44.12 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.31 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 13 C 0.58 28.35 4.84 260.63 1.26 29.61 16 14 N -0.38 -20.99 11.40 -58.67 -0.67 -21.66 16 15 N -0.09 -4.97 13.38 37.02 0.50 -4.48 16 16 N -0.12 -6.24 13.93 37.02 0.52 -5.73 16 17 N -0.37 -16.89 3.51 -349.57 -1.23 -18.12 16 18 C 0.14 4.73 6.19 86.38 0.53 5.26 16 19 C 0.08 2.93 2.89 30.63 0.09 3.02 16 20 H 0.05 1.95 7.76 -2.39 -0.02 1.93 16 21 C -0.14 -3.28 5.42 30.68 0.17 -3.11 16 22 C -0.12 -2.63 6.03 30.71 0.19 -2.44 16 23 C -0.14 -3.33 6.14 30.68 0.19 -3.14 16 24 C 0.06 1.95 6.84 72.01 0.49 2.44 16 25 O -0.39 -15.11 10.33 -148.98 -1.54 -16.64 16 26 H 0.24 5.97 7.80 -4.40 -0.03 5.94 16 27 H 0.12 3.41 8.03 -2.39 -0.02 3.39 16 28 H 0.09 2.65 8.04 -2.38 -0.02 2.63 16 29 H 0.25 14.73 8.32 -92.71 -0.77 13.96 16 30 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.13 3.60 8.10 -2.39 -0.02 3.58 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -71.72 337.44 6.05 -65.67 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.04 Total: 17.95 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 6.56 Total: 13.56 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -2.04 Total: -124.64 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.54 Total: -16.64 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -71.72 6.05 -65.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332546965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.376 kcal (2) G-P(sol) polarization free energy of solvation -71.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.77 seconds