Wall clock time and date at job start Tue Mar 31 2020 08:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99839 * 2 1 4 4 H 1.48500 * 109.47212 * 270.00123 * 3 2 1 5 5 H 1.48503 * 109.46757 * 29.99988 * 3 2 1 6 6 H 1.48496 * 109.47133 * 150.00008 * 3 2 1 7 7 C 1.37874 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00148 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99996 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.47288 * 300.00051 * 9 7 2 11 11 O 1.42903 * 109.47141 * 60.00173 * 9 7 2 12 12 C 1.53005 * 109.47191 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.46854 * 176.36937 * 12 9 7 14 14 C 1.47894 * 111.00078 * 294.29350 * 13 12 9 15 15 C 1.53988 * 107.06139 * 214.15971 * 14 13 12 16 16 C 1.54601 * 105.13904 * 1.22612 * 15 14 13 17 17 H 1.08995 * 110.72174 * 263.42327 * 16 15 14 18 18 C 1.53001 * 110.72459 * 140.31514 * 16 15 14 19 19 O 1.42901 * 109.47037 * 66.45431 * 18 16 15 20 20 C 1.35902 * 116.99826 * 179.97438 * 19 18 16 21 21 C 1.38726 * 120.05495 * 359.73046 * 20 19 18 22 22 C 1.38147 * 119.94323 * 179.74346 * 21 20 19 23 23 C 1.38268 * 120.05478 * 0.50186 * 22 21 20 24 24 C 1.38269 * 120.11064 * 359.77271 * 23 22 21 25 25 C 1.38140 * 120.05422 * 359.97438 * 24 23 22 26 26 C 1.48539 * 110.99332 * 176.89978 * 13 12 9 27 27 H 0.97002 * 120.00350 * 359.97438 * 1 2 3 28 28 H 0.96703 * 114.00515 * 59.99374 * 11 9 7 29 29 H 1.08998 * 109.47099 * 296.37014 * 12 9 7 30 30 H 1.08996 * 109.46772 * 56.37042 * 12 9 7 31 31 H 1.09000 * 109.91861 * 333.51479 * 14 13 12 32 32 H 1.09001 * 109.91718 * 94.80260 * 14 13 12 33 33 H 1.09005 * 110.31337 * 120.14001 * 15 14 13 34 34 H 1.08998 * 110.31394 * 242.21055 * 15 14 13 35 35 H 1.08996 * 109.46889 * 186.45577 * 18 16 15 36 36 H 1.09007 * 109.46907 * 306.45526 * 18 16 15 37 37 H 1.08004 * 120.02985 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.97575 * 180.27529 * 22 21 20 39 39 H 1.08001 * 119.94482 * 179.73999 * 23 22 21 40 40 H 1.07998 * 119.97447 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.02927 * 179.97438 * 25 24 23 42 42 H 1.08995 * 110.66793 * 278.14985 * 26 13 12 43 43 H 1.08996 * 110.66517 * 41.28860 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 1 3.8745 -0.6799 -0.8911 11 8 3.9883 -0.5206 1.1657 12 6 4.0216 -2.6365 -0.0010 13 7 5.4880 -2.6373 -0.0893 14 6 5.9410 -2.0965 -1.3891 15 6 7.2187 -2.8635 -1.7769 16 6 7.4379 -3.8851 -0.6375 17 1 8.1482 -3.5003 0.0942 18 6 7.9140 -5.2270 -1.1975 19 8 9.2170 -5.0717 -1.7632 20 6 9.7891 -6.1777 -2.3076 21 6 9.1126 -7.3887 -2.2926 22 6 9.6941 -8.5104 -2.8514 23 6 10.9536 -8.4290 -3.4161 24 6 11.6322 -7.2244 -3.4273 25 6 11.0529 -6.0988 -2.8744 26 6 6.0247 -4.0204 -0.0169 27 1 -0.4851 0.8400 0.0004 28 1 3.7032 -0.9242 1.9969 29 1 3.7127 -3.1310 0.9199 30 1 3.6058 -3.1689 -0.8564 31 1 5.1709 -2.2519 -2.1447 32 1 6.1609 -1.0333 -1.2926 33 1 7.0765 -3.3802 -2.7261 34 1 8.0652 -2.1800 -1.8422 35 1 7.9519 -5.9629 -0.3944 36 1 7.2213 -5.5654 -1.9682 37 1 8.1306 -7.4538 -1.8477 38 1 9.1660 -9.4525 -2.8439 39 1 11.4082 -9.3080 -3.8487 40 1 12.6161 -7.1634 -3.8685 41 1 11.5836 -5.1581 -2.8830 42 1 6.0897 -4.3541 1.0187 43 1 5.4103 -4.7027 -0.6043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333921413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:48 Heat of formation + Delta-G solvation = -56.438358 kcal Electronic energy + Delta-G solvation = -22634.929873 eV Core-core repulsion = 19259.326561 eV Total energy + Delta-G solvation = -3375.603311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41736 -38.96949 -37.52385 -35.89847 -32.63432 -32.22392 -31.29021 -30.15362 -29.30681 -28.34661 -25.90268 -24.21519 -22.83654 -22.24469 -21.43185 -20.54545 -19.51164 -18.45132 -17.32502 -16.73750 -16.22525 -15.96192 -15.40294 -15.05699 -14.73130 -14.61092 -14.47886 -14.05517 -13.71388 -13.58584 -13.24499 -13.04408 -12.89333 -12.37362 -12.25874 -12.05553 -11.86279 -11.55536 -11.41522 -11.19771 -11.09575 -10.90146 -10.79189 -10.66309 -10.44731 -10.34411 -9.87903 -9.30866 -9.02183 -8.61562 -8.46936 -8.23961 -7.93461 -6.12909 -4.24357 1.03635 1.16545 2.91199 3.40100 3.49743 3.50343 3.77967 4.25095 4.51687 4.54991 4.56914 4.62256 4.75481 4.80068 4.82548 5.03085 5.08745 5.16793 5.22619 5.22942 5.33376 5.37367 5.44928 5.66573 5.70068 5.81393 5.86293 5.88398 5.98154 6.02363 6.08799 6.11339 6.20383 6.23114 6.30142 6.38121 6.49332 6.58721 7.16346 7.19647 7.34153 7.43043 7.68328 8.29343 8.83434 9.11964 9.52286 10.97646 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.043086 B = 0.002577 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.702642 B =10864.227981 C =11109.043943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.871 3.129 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.215 1.215 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.202 3.798 10 H 0.052 0.948 11 O -0.571 6.571 12 C 0.032 3.968 13 N -0.506 5.506 14 C 0.035 3.965 15 C -0.120 4.120 16 C -0.090 4.090 17 H 0.093 0.907 18 C 0.069 3.931 19 O -0.310 6.310 20 C 0.134 3.866 21 C -0.211 4.211 22 C -0.080 4.080 23 C -0.164 4.164 24 C -0.082 4.082 25 C -0.155 4.155 26 C 0.042 3.958 27 H 0.265 0.735 28 H 0.354 0.646 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.082 0.918 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.282 -15.415 -5.037 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.604 4.604 8 H 0.089 0.911 9 C 0.144 3.856 10 H 0.070 0.930 11 O -0.376 6.376 12 C -0.096 4.096 13 N -0.230 5.230 14 C -0.093 4.093 15 C -0.159 4.159 16 C -0.109 4.109 17 H 0.112 0.888 18 C -0.006 4.006 19 O -0.224 6.224 20 C 0.088 3.912 21 C -0.230 4.230 22 C -0.099 4.099 23 C -0.182 4.182 24 C -0.100 4.100 25 C -0.174 4.174 26 C -0.086 4.086 27 H 0.074 0.926 28 H 0.200 0.800 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.100 0.900 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 21.641 -14.397 -5.027 26.474 hybrid contribution -0.729 -0.314 -0.414 0.895 sum 20.913 -14.711 -5.441 26.141 Atomic orbital electron populations 1.69957 1.06792 1.27481 1.48856 1.24988 0.94617 1.00026 0.92475 0.87028 0.83204 0.81704 0.78366 1.21494 1.22254 1.13703 1.21518 0.89920 0.94782 1.54208 0.91137 1.19697 0.93030 0.86833 0.86031 0.92997 1.86666 1.77915 1.56984 1.16067 1.23022 0.84743 1.01287 1.00545 1.64830 1.11648 1.15380 1.31141 1.22879 0.95452 1.00367 0.90625 1.22431 0.98351 0.97654 0.97416 1.22079 0.97489 0.93094 0.98195 0.88828 1.22888 0.81850 0.98737 0.97140 1.86092 1.32619 1.32054 1.71607 1.19085 0.92809 0.85908 0.93361 1.21323 1.01824 0.93029 1.06811 1.20971 0.95081 0.97824 0.95978 1.21060 0.95821 0.98096 1.03253 1.20974 0.99494 0.92038 0.97488 1.20482 0.93967 1.00017 1.02925 1.23152 0.92870 0.91965 1.00611 0.92588 0.80010 0.91159 0.94722 0.93623 0.90183 0.91762 0.90879 0.91803 0.91917 0.85435 0.85864 0.86030 0.85464 0.85210 0.89981 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.96 55.43 0.77 -26.55 16 2 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 3 Si 0.87 22.00 26.99 -169.99 -4.59 17.41 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.21 -5.34 5.31 56.52 0.30 -5.04 16 7 C -0.57 -15.69 9.34 -34.44 -0.32 -16.02 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.20 4.72 2.29 -27.88 -0.06 4.66 16 10 H 0.05 1.26 6.67 -51.93 -0.35 0.92 16 11 O -0.57 -13.20 10.07 -35.23 -0.35 -13.56 16 12 C 0.03 0.62 4.32 -3.82 -0.02 0.60 16 13 N -0.51 -8.55 5.23 -230.46 -1.20 -9.76 16 14 C 0.03 0.55 5.53 -2.76 -0.02 0.54 16 15 C -0.12 -1.54 6.36 -25.37 -0.16 -1.70 16 16 C -0.09 -1.06 3.35 -88.75 -0.30 -1.35 16 17 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 18 C 0.07 0.71 4.06 37.16 0.15 0.86 16 19 O -0.31 -3.60 9.98 -19.43 -0.19 -3.80 16 20 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 21 C -0.21 -2.02 9.04 -39.43 -0.36 -2.37 16 22 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 23 C -0.16 -1.28 10.04 -39.56 -0.40 -1.68 16 24 C -0.08 -0.66 10.04 -39.61 -0.40 -1.05 16 25 C -0.16 -1.50 9.99 -39.43 -0.39 -1.89 16 26 C 0.04 0.56 6.00 -1.89 -0.01 0.55 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.35 7.31 9.04 45.56 0.41 7.73 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.03 0.68 7.94 -51.93 -0.41 0.27 16 31 H 0.05 0.75 7.64 -51.93 -0.40 0.35 16 32 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 33 H 0.06 0.78 7.80 -51.93 -0.41 0.37 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 36 H 0.06 0.61 7.61 -51.92 -0.40 0.22 16 37 H 0.13 1.07 6.30 -52.48 -0.33 0.74 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 0.54 7.93 -51.93 -0.41 0.13 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -31.91 346.09 -9.53 -41.44 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.14 Total: 6.03 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -3.04 Total: -16.43 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.43 Total: -36.31 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.55 Total: -17.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.59 Total: 17.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.91 -9.53 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333921413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.999 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds