Wall clock time and date at job start Tue Mar 31 2020 08:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99839 * 2 1 4 4 H 1.48500 * 109.47212 * 270.00123 * 3 2 1 5 5 H 1.48503 * 109.46757 * 29.99988 * 3 2 1 6 6 H 1.48496 * 109.47133 * 150.00008 * 3 2 1 7 7 C 1.37874 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00148 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99996 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.47288 * 300.00051 * 9 7 2 11 11 O 1.42903 * 109.47141 * 60.00173 * 9 7 2 12 12 C 1.53005 * 109.47191 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.46854 * 176.36937 * 12 9 7 14 14 C 1.47894 * 111.00078 * 294.29350 * 13 12 9 15 15 C 1.53988 * 107.06139 * 214.15971 * 14 13 12 16 16 C 1.54601 * 105.13904 * 1.22612 * 15 14 13 17 17 H 1.08995 * 110.72174 * 263.42327 * 16 15 14 18 18 C 1.53001 * 110.72459 * 140.31514 * 16 15 14 19 19 O 1.42901 * 109.47037 * 66.45431 * 18 16 15 20 20 C 1.35902 * 116.99826 * 179.97438 * 19 18 16 21 21 C 1.38726 * 120.05495 * 359.73046 * 20 19 18 22 22 C 1.38147 * 119.94323 * 179.74346 * 21 20 19 23 23 C 1.38268 * 120.05478 * 0.50186 * 22 21 20 24 24 C 1.38269 * 120.11064 * 359.77271 * 23 22 21 25 25 C 1.38140 * 120.05422 * 359.97438 * 24 23 22 26 26 C 1.48539 * 110.99332 * 176.89978 * 13 12 9 27 27 H 0.97002 * 120.00350 * 359.97438 * 1 2 3 28 28 H 0.96703 * 114.00515 * 59.99374 * 11 9 7 29 29 H 1.08998 * 109.47099 * 296.37014 * 12 9 7 30 30 H 1.08996 * 109.46772 * 56.37042 * 12 9 7 31 31 H 1.09000 * 109.91861 * 333.51479 * 14 13 12 32 32 H 1.09001 * 109.91718 * 94.80260 * 14 13 12 33 33 H 1.09005 * 110.31337 * 120.14001 * 15 14 13 34 34 H 1.08998 * 110.31394 * 242.21055 * 15 14 13 35 35 H 1.08996 * 109.46889 * 186.45577 * 18 16 15 36 36 H 1.09007 * 109.46907 * 306.45526 * 18 16 15 37 37 H 1.08004 * 120.02985 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.97575 * 180.27529 * 22 21 20 39 39 H 1.08001 * 119.94482 * 179.73999 * 23 22 21 40 40 H 1.07998 * 119.97447 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.02927 * 179.97438 * 25 24 23 42 42 H 1.08995 * 110.66793 * 278.14985 * 26 13 12 43 43 H 1.08996 * 110.66517 * 41.28860 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 1 3.8745 -0.6799 -0.8911 11 8 3.9883 -0.5206 1.1657 12 6 4.0216 -2.6365 -0.0010 13 7 5.4880 -2.6373 -0.0893 14 6 5.9410 -2.0965 -1.3891 15 6 7.2187 -2.8635 -1.7769 16 6 7.4379 -3.8851 -0.6375 17 1 8.1482 -3.5003 0.0942 18 6 7.9140 -5.2270 -1.1975 19 8 9.2170 -5.0717 -1.7632 20 6 9.7891 -6.1777 -2.3076 21 6 9.1126 -7.3887 -2.2926 22 6 9.6941 -8.5104 -2.8514 23 6 10.9536 -8.4290 -3.4161 24 6 11.6322 -7.2244 -3.4273 25 6 11.0529 -6.0988 -2.8744 26 6 6.0247 -4.0204 -0.0169 27 1 -0.4851 0.8400 0.0004 28 1 3.7032 -0.9242 1.9969 29 1 3.7127 -3.1310 0.9199 30 1 3.6058 -3.1689 -0.8564 31 1 5.1709 -2.2519 -2.1447 32 1 6.1609 -1.0333 -1.2926 33 1 7.0765 -3.3802 -2.7261 34 1 8.0652 -2.1800 -1.8422 35 1 7.9519 -5.9629 -0.3944 36 1 7.2213 -5.5654 -1.9682 37 1 8.1306 -7.4538 -1.8477 38 1 9.1660 -9.4525 -2.8439 39 1 11.4082 -9.3080 -3.8487 40 1 12.6161 -7.1634 -3.8685 41 1 11.5836 -5.1581 -2.8830 42 1 6.0897 -4.3541 1.0187 43 1 5.4103 -4.7027 -0.6043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333921413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:45 Heat of formation + Delta-G solvation = -78.651091 kcal Electronic energy + Delta-G solvation = -22635.893089 eV Core-core repulsion = 19259.326561 eV Total energy + Delta-G solvation = -3376.566528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17192 -40.10935 -38.38530 -37.56200 -34.42435 -33.85466 -31.94844 -31.04931 -30.29043 -30.00608 -27.23080 -25.62205 -23.52563 -23.17816 -22.79686 -21.74736 -20.79542 -19.37381 -19.15231 -17.65318 -17.01320 -16.83475 -16.75055 -16.50405 -16.23540 -16.14054 -15.54574 -15.25839 -14.96270 -14.69040 -14.33452 -14.20009 -14.01463 -13.84644 -13.50973 -13.32648 -13.03708 -12.88910 -12.49635 -12.43967 -12.37578 -12.25683 -12.08622 -11.85092 -11.72421 -11.55096 -11.44537 -11.06336 -10.81929 -10.12218 -9.93860 -9.30557 -9.15206 -8.36879 -6.51368 0.40715 0.51057 1.38334 1.44124 1.75245 2.13904 2.43215 2.86565 3.01061 3.06604 3.62745 3.64132 3.81006 3.93423 4.00651 4.09311 4.19434 4.23691 4.26952 4.33654 4.37382 4.39377 4.52149 4.54343 4.59072 4.65023 4.71534 4.77768 4.90019 4.94838 5.02964 5.10301 5.13717 5.26283 5.38575 5.42580 5.47730 5.50111 5.62019 5.88367 5.99011 6.08169 6.10324 6.46970 6.61206 7.21936 7.37380 8.77137 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.043086 B = 0.002577 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.702642 B =10864.227981 C =11109.043943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.206 1.206 7 C -0.566 4.566 8 H 0.038 0.962 9 C 0.209 3.791 10 H 0.045 0.955 11 O -0.575 6.575 12 C 0.046 3.954 13 N -0.517 5.517 14 C 0.032 3.968 15 C -0.113 4.113 16 C -0.080 4.080 17 H 0.092 0.908 18 C 0.074 3.926 19 O -0.326 6.326 20 C 0.109 3.891 21 C -0.222 4.222 22 C -0.088 4.088 23 C -0.166 4.166 24 C -0.084 4.084 25 C -0.172 4.172 26 C 0.043 3.957 27 H 0.267 0.733 28 H 0.366 0.634 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.132 0.868 42 H 0.095 0.905 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.650 -16.544 -5.257 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.171 4.171 3 Si 0.761 3.239 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.128 1.128 7 C -0.604 4.604 8 H 0.056 0.944 9 C 0.151 3.849 10 H 0.063 0.937 11 O -0.381 6.381 12 C -0.082 4.082 13 N -0.241 5.241 14 C -0.096 4.096 15 C -0.151 4.151 16 C -0.099 4.099 17 H 0.110 0.890 18 C -0.001 4.001 19 O -0.241 6.241 20 C 0.064 3.936 21 C -0.241 4.241 22 C -0.106 4.106 23 C -0.184 4.184 24 C -0.102 4.102 25 C -0.190 4.190 26 C -0.084 4.084 27 H 0.076 0.924 28 H 0.213 0.787 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.150 0.850 42 H 0.113 0.887 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 24.028 -15.547 -5.242 29.095 hybrid contribution -1.442 -0.072 -0.361 1.488 sum 22.586 -15.620 -5.603 28.027 Atomic orbital electron populations 1.70074 1.08408 1.28403 1.50890 1.25834 0.95268 1.03565 0.92431 0.86012 0.82017 0.77543 0.78323 1.21289 1.22283 1.12795 1.21848 0.92361 0.93352 1.52880 0.94373 1.19484 0.90204 0.89306 0.85924 0.93731 1.86597 1.77621 1.57365 1.16516 1.22673 0.86704 0.98367 1.00492 1.64744 1.09543 1.18029 1.31814 1.22888 0.96630 1.00114 0.90013 1.22369 0.96827 0.97748 0.98134 1.21958 0.96564 0.93739 0.97611 0.88973 1.22812 0.81724 0.97864 0.97712 1.86040 1.33006 1.32873 1.72134 1.19338 0.93553 0.86155 0.94539 1.21513 1.02296 0.93079 1.07210 1.21308 0.95508 0.98315 0.95463 1.21434 0.95637 0.98862 1.02489 1.21310 1.00462 0.91612 0.96837 1.20719 0.93986 1.00898 1.03444 1.23215 0.93509 0.89946 1.01779 0.92426 0.78651 0.90795 0.95406 0.94617 0.91527 0.90997 0.90370 0.90341 0.91460 0.84684 0.83831 0.83648 0.83109 0.84983 0.88718 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 2 C 0.03 1.68 5.47 84.65 0.46 2.14 16 3 Si 0.94 45.76 26.99 68.60 1.85 47.61 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.21 -9.70 5.31 99.48 0.53 -9.17 16 7 C -0.57 -31.80 9.34 25.60 0.24 -31.56 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.31 16 9 C 0.21 9.68 2.29 29.85 0.07 9.74 16 10 H 0.04 2.15 6.67 -2.39 -0.02 2.13 16 11 O -0.57 -25.73 10.07 -148.98 -1.50 -27.23 16 12 C 0.05 1.77 4.32 86.30 0.37 2.14 16 13 N -0.52 -16.83 5.23 -883.03 -4.61 -21.44 16 14 C 0.03 0.98 5.53 86.45 0.48 1.46 16 15 C -0.11 -2.72 6.36 31.47 0.20 -2.52 16 16 C -0.08 -1.73 3.35 -9.58 -0.03 -1.76 16 17 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 18 C 0.07 1.37 4.06 71.98 0.29 1.67 16 19 O -0.33 -7.18 9.98 -92.45 -0.92 -8.10 16 20 C 0.11 2.24 6.69 22.51 0.15 2.39 16 21 C -0.22 -3.89 9.04 22.36 0.20 -3.69 16 22 C -0.09 -1.27 10.04 22.26 0.22 -1.04 16 23 C -0.17 -2.17 10.04 22.28 0.22 -1.94 16 24 C -0.08 -1.18 10.04 22.25 0.22 -0.96 16 25 C -0.17 -3.12 9.99 22.36 0.22 -2.89 16 26 C 0.04 1.06 6.00 86.65 0.52 1.58 16 27 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.37 14.58 9.04 -74.05 -0.67 13.91 16 29 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.03 1.09 7.94 -2.39 -0.02 1.07 16 31 H 0.04 1.16 7.64 -2.39 -0.02 1.14 16 32 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 33 H 0.07 1.63 7.80 -2.38 -0.02 1.61 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.22 7.65 -2.39 -0.02 1.20 16 36 H 0.07 1.18 7.61 -2.38 -0.02 1.17 16 37 H 0.14 2.02 6.30 -2.91 -0.02 2.00 16 38 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 1.17 7.93 -2.39 -0.02 1.15 16 Total: -1.00 -68.31 346.09 -0.89 -69.21 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.14 Total: 23.37 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 3.85 Total: -25.25 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -4.31 Total: -79.60 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -2.42 Total: -35.33 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.85 Total: 47.61 kcal Total: -68.31 -0.89 -69.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333921413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.446 kcal (2) G-P(sol) polarization free energy of solvation -68.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds