Wall clock time and date at job start Tue Mar 31 2020 08:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 11 11 O 1.42895 * 109.47288 * 59.99966 * 9 7 2 12 12 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 13 13 N 1.46902 * 109.47411 * 179.97438 * 12 9 7 14 14 C 1.47443 * 110.99742 * 69.87295 * 13 12 9 15 15 C 1.54319 * 107.23216 * 123.25719 * 14 13 12 16 16 C 1.55140 * 103.01846 * 22.28221 * 15 14 13 17 17 H 1.09004 * 110.98881 * 82.43965 * 16 15 14 18 18 C 1.52999 * 110.99184 * 206.21472 * 16 15 14 19 19 O 1.42901 * 109.47014 * 293.55224 * 18 16 15 20 20 C 1.35902 * 116.99977 * 180.02562 * 19 18 16 21 21 C 1.38733 * 120.05174 * 359.71975 * 20 19 18 22 22 C 1.38152 * 119.94049 * 179.74511 * 21 20 19 23 23 C 1.38268 * 120.05530 * 0.51256 * 22 21 20 24 24 C 1.38266 * 120.11180 * 359.76179 * 23 22 21 25 25 C 1.38147 * 120.05412 * 359.97438 * 24 23 22 26 26 C 1.47842 * 110.99619 * 190.71403 * 13 12 9 27 27 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 28 28 H 0.96704 * 113.99918 * 59.99934 * 11 9 7 29 29 H 1.09003 * 109.46788 * 300.00488 * 12 9 7 30 30 H 1.08999 * 109.46950 * 59.99414 * 12 9 7 31 31 H 1.08998 * 109.88794 * 242.66159 * 14 13 12 32 32 H 1.09004 * 109.89044 * 3.68960 * 14 13 12 33 33 H 1.09003 * 110.70041 * 140.66433 * 15 14 13 34 34 H 1.08993 * 110.70873 * 263.89796 * 15 14 13 35 35 H 1.09002 * 109.46970 * 53.54708 * 18 16 15 36 36 H 1.08998 * 109.47229 * 173.54678 * 18 16 15 37 37 H 1.08003 * 120.03355 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.97173 * 180.22820 * 22 21 20 39 39 H 1.08002 * 119.94348 * 179.74690 * 23 22 21 40 40 H 1.07999 * 119.97435 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.02824 * 180.02562 * 25 24 23 42 42 H 1.08996 * 110.37952 * 332.46681 * 26 13 12 43 43 H 1.08997 * 110.37239 * 94.81038 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8898 11 8 0.4289 -2.5746 -1.1669 12 6 2.2450 -3.6622 -0.0005 13 7 1.5104 -4.9343 0.0001 14 6 0.8356 -5.1554 -1.2921 15 6 1.3375 -6.5060 -1.8448 16 6 1.8344 -7.2414 -0.5723 17 1 1.0056 -7.7158 -0.0468 18 6 2.9177 -8.2648 -0.9186 19 8 2.3488 -9.3124 -1.7066 20 6 3.1828 -10.3103 -2.1010 21 6 4.5225 -10.2787 -1.7419 22 6 5.3671 -11.2970 -2.1396 23 6 4.8806 -12.3416 -2.9038 24 6 3.5471 -12.3724 -3.2678 25 6 2.6972 -11.3593 -2.8680 26 6 2.4201 -6.0712 0.2567 27 1 -0.4850 0.8401 0.0004 28 1 0.9207 -2.5291 -1.9983 29 1 2.8717 -3.6044 -0.8905 30 1 2.8717 -3.6044 0.8894 31 1 -0.2437 -5.1930 -1.1451 32 1 1.0877 -4.3520 -1.9843 33 1 0.5226 -7.0567 -2.3147 34 1 2.1571 -6.3544 -2.5471 35 1 3.7121 -7.7762 -1.4829 36 1 3.3290 -8.6834 -0.0001 37 1 4.9040 -9.4607 -1.1488 38 1 6.4094 -11.2749 -1.8572 39 1 5.5435 -13.1346 -3.2172 40 1 3.1696 -13.1892 -3.8651 41 1 1.6556 -11.3840 -3.1522 42 1 3.4288 -5.8340 -0.0816 43 1 2.4239 -6.3222 1.3174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333921414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:53 Heat of formation + Delta-G solvation = -58.778029 kcal Electronic energy + Delta-G solvation = -22675.085907 eV Core-core repulsion = 19299.381140 eV Total energy + Delta-G solvation = -3375.704767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.37067 -38.90737 -37.48372 -35.56903 -32.40330 -32.05905 -31.24908 -30.11715 -29.24977 -27.94978 -25.81039 -24.13539 -22.81633 -22.18679 -21.20329 -20.40564 -19.79776 -18.41506 -16.95346 -16.63789 -16.16213 -15.93255 -15.35920 -14.89050 -14.62104 -14.55788 -14.32586 -13.82955 -13.68620 -13.29693 -13.28004 -13.03125 -12.79375 -12.29750 -12.09670 -11.88640 -11.67001 -11.44779 -11.20655 -11.09142 -10.92259 -10.90149 -10.80121 -10.62902 -10.54786 -10.21327 -9.99746 -9.27974 -8.97581 -8.56245 -8.43541 -8.05134 -7.70053 -5.99564 -4.18279 1.06470 1.19593 2.95985 3.28626 3.34283 3.35605 3.53259 4.31695 4.44262 4.56050 4.60788 4.68264 4.82558 4.85110 4.96817 5.08127 5.11734 5.23681 5.26879 5.27547 5.42225 5.46143 5.57241 5.73002 5.79547 5.90980 5.99014 6.05721 6.12953 6.14619 6.17562 6.25771 6.30370 6.34697 6.52079 6.57357 6.67271 6.87871 7.22561 7.51742 7.60594 7.76750 7.95419 8.21414 8.85094 9.38784 9.58793 11.04444 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040217 B = 0.002515 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.052508 B =11130.617054 C =11437.338359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.575 4.575 8 H 0.053 0.947 9 C 0.236 3.764 10 H 0.063 0.937 11 O -0.558 6.558 12 C 0.027 3.973 13 N -0.523 5.523 14 C 0.053 3.947 15 C -0.136 4.136 16 C -0.097 4.097 17 H 0.093 0.907 18 C 0.072 3.928 19 O -0.310 6.310 20 C 0.135 3.865 21 C -0.211 4.211 22 C -0.081 4.081 23 C -0.165 4.165 24 C -0.082 4.082 25 C -0.155 4.155 26 C 0.051 3.949 27 H 0.261 0.739 28 H 0.338 0.662 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.041 0.959 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.389 -22.548 -4.871 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.071 0.929 9 C 0.178 3.822 10 H 0.081 0.919 11 O -0.361 6.361 12 C -0.101 4.101 13 N -0.247 5.247 14 C -0.075 4.075 15 C -0.175 4.175 16 C -0.116 4.116 17 H 0.111 0.889 18 C -0.004 4.004 19 O -0.223 6.223 20 C 0.089 3.911 21 C -0.230 4.230 22 C -0.099 4.099 23 C -0.183 4.183 24 C -0.100 4.100 25 C -0.174 4.174 26 C -0.078 4.078 27 H 0.071 0.929 28 H 0.182 0.818 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.059 0.941 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.150 -22.386 -4.032 23.844 hybrid contribution 1.941 1.058 -0.843 2.366 sum 9.091 -21.329 -4.875 23.692 Atomic orbital electron populations 1.70076 1.05889 1.26499 1.46785 1.25028 0.94692 0.99054 0.93868 0.86735 0.79713 0.83258 0.78632 1.21188 1.20168 1.20240 1.21595 0.93041 0.91615 1.55051 0.92856 1.19351 0.88054 0.88482 0.86291 0.91932 1.86657 1.38453 1.95906 1.15071 1.23184 0.97114 0.90352 0.99417 1.63602 1.27784 1.01573 1.31748 1.22903 0.99906 0.94715 0.89959 1.22910 1.00961 0.97128 0.96455 1.22322 0.97643 0.93988 0.97675 0.88885 1.22823 0.96628 0.86906 0.94027 1.86095 1.37062 1.31967 1.67198 1.19094 0.89160 0.88731 0.94134 1.21326 0.93238 1.02006 1.06440 1.20966 0.99359 0.93280 0.96265 1.21053 0.95914 0.99704 1.01607 1.20971 0.93338 0.97460 0.98223 1.20484 1.01045 0.94141 1.01727 1.22980 0.95056 0.90112 0.99620 0.92934 0.81758 0.95885 0.91583 0.90613 0.91288 0.90838 0.92077 0.91998 0.91881 0.85453 0.85893 0.86052 0.85472 0.85200 0.94064 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.39 12.84 55.43 0.71 -24.68 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.57 -15.70 8.76 -34.44 -0.30 -16.00 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.24 5.97 3.08 -27.89 -0.09 5.88 16 10 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 11 O -0.56 -14.02 10.34 -35.23 -0.36 -14.38 16 12 C 0.03 0.56 4.40 -3.82 -0.02 0.54 16 13 N -0.52 -9.51 5.16 -231.25 -1.19 -10.70 16 14 C 0.05 0.90 5.52 -2.84 -0.02 0.88 16 15 C -0.14 -1.87 6.27 -24.91 -0.16 -2.02 16 16 C -0.10 -1.23 3.32 -88.48 -0.29 -1.52 16 17 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 18 C 0.07 0.78 4.18 37.16 0.16 0.94 16 19 O -0.31 -3.78 9.99 -19.43 -0.19 -3.98 16 20 C 0.13 1.51 6.69 -39.22 -0.26 1.25 16 21 C -0.21 -2.10 9.04 -39.43 -0.36 -2.46 16 22 C -0.08 -0.69 10.04 -39.60 -0.40 -1.09 16 23 C -0.16 -1.33 10.04 -39.56 -0.40 -1.73 16 24 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 25 C -0.16 -1.56 9.99 -39.43 -0.39 -1.95 16 26 C 0.05 0.72 6.15 -2.30 -0.01 0.71 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.34 7.63 7.92 45.56 0.36 7.99 16 29 H 0.02 0.46 7.96 -51.93 -0.41 0.05 16 30 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.24 5.20 -51.93 -0.27 0.97 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.82 8.01 -51.93 -0.42 0.40 16 35 H 0.06 0.65 7.62 -51.93 -0.40 0.25 16 36 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 37 H 0.13 1.12 6.30 -52.48 -0.33 0.79 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.04 0.56 7.71 -51.93 -0.40 0.16 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -30.80 347.56 -9.88 -40.68 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.03 Total: 7.22 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -3.03 Total: -15.52 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.48 Total: -35.38 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.56 Total: -18.36 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.80 -9.88 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333921414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.094 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds