Wall clock time and date at job start Tue Mar 31 2020 08:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 11 11 O 1.42895 * 109.47288 * 59.99966 * 9 7 2 12 12 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 13 13 N 1.46902 * 109.47411 * 179.97438 * 12 9 7 14 14 C 1.47443 * 110.99742 * 69.87295 * 13 12 9 15 15 C 1.54319 * 107.23216 * 123.25719 * 14 13 12 16 16 C 1.55140 * 103.01846 * 22.28221 * 15 14 13 17 17 H 1.09004 * 110.98881 * 82.43965 * 16 15 14 18 18 C 1.52999 * 110.99184 * 206.21472 * 16 15 14 19 19 O 1.42901 * 109.47014 * 293.55224 * 18 16 15 20 20 C 1.35902 * 116.99977 * 180.02562 * 19 18 16 21 21 C 1.38733 * 120.05174 * 359.71975 * 20 19 18 22 22 C 1.38152 * 119.94049 * 179.74511 * 21 20 19 23 23 C 1.38268 * 120.05530 * 0.51256 * 22 21 20 24 24 C 1.38266 * 120.11180 * 359.76179 * 23 22 21 25 25 C 1.38147 * 120.05412 * 359.97438 * 24 23 22 26 26 C 1.47842 * 110.99619 * 190.71403 * 13 12 9 27 27 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 28 28 H 0.96704 * 113.99918 * 59.99934 * 11 9 7 29 29 H 1.09003 * 109.46788 * 300.00488 * 12 9 7 30 30 H 1.08999 * 109.46950 * 59.99414 * 12 9 7 31 31 H 1.08998 * 109.88794 * 242.66159 * 14 13 12 32 32 H 1.09004 * 109.89044 * 3.68960 * 14 13 12 33 33 H 1.09003 * 110.70041 * 140.66433 * 15 14 13 34 34 H 1.08993 * 110.70873 * 263.89796 * 15 14 13 35 35 H 1.09002 * 109.46970 * 53.54708 * 18 16 15 36 36 H 1.08998 * 109.47229 * 173.54678 * 18 16 15 37 37 H 1.08003 * 120.03355 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.97173 * 180.22820 * 22 21 20 39 39 H 1.08002 * 119.94348 * 179.74690 * 23 22 21 40 40 H 1.07999 * 119.97435 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.02824 * 180.02562 * 25 24 23 42 42 H 1.08996 * 110.37952 * 332.46681 * 26 13 12 43 43 H 1.08997 * 110.37239 * 94.81038 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8898 11 8 0.4289 -2.5746 -1.1669 12 6 2.2450 -3.6622 -0.0005 13 7 1.5104 -4.9343 0.0001 14 6 0.8356 -5.1554 -1.2921 15 6 1.3375 -6.5060 -1.8448 16 6 1.8344 -7.2414 -0.5723 17 1 1.0056 -7.7158 -0.0468 18 6 2.9177 -8.2648 -0.9186 19 8 2.3488 -9.3124 -1.7066 20 6 3.1828 -10.3103 -2.1010 21 6 4.5225 -10.2787 -1.7419 22 6 5.3671 -11.2970 -2.1396 23 6 4.8806 -12.3416 -2.9038 24 6 3.5471 -12.3724 -3.2678 25 6 2.6972 -11.3593 -2.8680 26 6 2.4201 -6.0712 0.2567 27 1 -0.4850 0.8401 0.0004 28 1 0.9207 -2.5291 -1.9983 29 1 2.8717 -3.6044 -0.8905 30 1 2.8717 -3.6044 0.8894 31 1 -0.2437 -5.1930 -1.1451 32 1 1.0877 -4.3520 -1.9843 33 1 0.5226 -7.0567 -2.3147 34 1 2.1571 -6.3544 -2.5471 35 1 3.7121 -7.7762 -1.4829 36 1 3.3290 -8.6834 -0.0001 37 1 4.9040 -9.4607 -1.1488 38 1 6.4094 -11.2749 -1.8572 39 1 5.5435 -13.1346 -3.2172 40 1 3.1696 -13.1892 -3.8651 41 1 1.6556 -11.3840 -3.1522 42 1 3.4288 -5.8340 -0.0816 43 1 2.4239 -6.3222 1.3174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333921414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:52 Heat of formation + Delta-G solvation = -79.313882 kcal Electronic energy + Delta-G solvation = -22675.976409 eV Core-core repulsion = 19299.381140 eV Total energy + Delta-G solvation = -3376.595269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17043 -40.14782 -38.36650 -37.32558 -34.28664 -33.62469 -31.94903 -31.10514 -30.29072 -29.64164 -27.15429 -25.68758 -23.53798 -23.01160 -22.83562 -21.70144 -21.06772 -19.19073 -18.96546 -17.60382 -16.94482 -16.76897 -16.66930 -16.55928 -16.20848 -16.00945 -15.43057 -15.30102 -14.77013 -14.47654 -14.32563 -14.15540 -13.88645 -13.74961 -13.22755 -13.19925 -13.05900 -12.82342 -12.71892 -12.48252 -12.35471 -12.21454 -12.02466 -11.91874 -11.76002 -11.52537 -11.44398 -11.00528 -10.69835 -9.99812 -9.93666 -9.15787 -9.13268 -8.12514 -6.38956 0.40841 0.51198 1.40798 1.42563 1.50759 2.14104 2.38968 2.86702 3.11622 3.15290 3.62962 3.76129 3.78640 3.93844 4.00708 4.17426 4.25474 4.26671 4.33291 4.36977 4.39951 4.49201 4.52808 4.59024 4.60420 4.68757 4.77529 4.81556 4.95873 5.04363 5.10589 5.13264 5.20082 5.35222 5.38842 5.50186 5.62032 5.62507 5.73193 5.88682 6.01278 6.22874 6.27186 6.47282 6.74520 7.33591 7.54589 8.91697 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040217 B = 0.002515 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.052508 B =11130.617054 C =11437.338359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.286 1.286 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.587 4.587 8 H 0.060 0.940 9 C 0.236 3.764 10 H 0.018 0.982 11 O -0.569 6.569 12 C 0.047 3.953 13 N -0.543 5.543 14 C 0.054 3.946 15 C -0.126 4.126 16 C -0.087 4.087 17 H 0.089 0.911 18 C 0.078 3.922 19 O -0.327 6.327 20 C 0.109 3.891 21 C -0.222 4.222 22 C -0.087 4.087 23 C -0.166 4.166 24 C -0.084 4.084 25 C -0.172 4.172 26 C 0.051 3.949 27 H 0.261 0.739 28 H 0.349 0.651 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.131 0.869 42 H 0.054 0.946 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.747 -23.917 -5.427 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.626 4.626 8 H 0.078 0.922 9 C 0.178 3.822 10 H 0.036 0.964 11 O -0.374 6.374 12 C -0.081 4.081 13 N -0.268 5.268 14 C -0.073 4.073 15 C -0.164 4.164 16 C -0.106 4.106 17 H 0.107 0.893 18 C 0.002 3.998 19 O -0.241 6.241 20 C 0.063 3.937 21 C -0.241 4.241 22 C -0.105 4.105 23 C -0.184 4.184 24 C -0.102 4.102 25 C -0.191 4.191 26 C -0.076 4.076 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.149 0.851 42 H 0.072 0.928 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.530 -23.779 -4.592 26.026 hybrid contribution 1.186 1.379 -0.688 1.945 sum 10.716 -22.400 -5.280 25.386 Atomic orbital electron populations 1.70228 1.07709 1.27383 1.48294 1.25924 0.95488 1.02977 0.93410 0.85594 0.78318 0.78411 0.79121 1.21136 1.19273 1.19163 1.22002 0.93520 0.92687 1.54353 0.92163 1.19158 0.87955 0.90253 0.84820 0.96373 1.86599 1.39076 1.96070 1.15616 1.22760 0.95658 0.89931 0.99795 1.63474 1.28849 1.01908 1.32531 1.22781 0.98760 0.96314 0.89491 1.22803 1.01313 0.95251 0.97035 1.22187 0.98043 0.93836 0.96521 0.89255 1.22728 0.95710 0.86493 0.94838 1.86041 1.37878 1.32507 1.67722 1.19353 0.89805 0.89065 0.95428 1.21517 0.92964 1.02830 1.06773 1.21312 1.00345 0.92933 0.95941 1.21436 0.96178 1.00039 1.00730 1.21310 0.93434 0.97509 0.97944 1.20718 1.01642 0.94616 1.02125 1.23021 0.94881 0.89073 1.00627 0.93032 0.80553 0.95205 0.91275 0.92680 0.92514 0.90278 0.91312 0.91360 0.90324 0.84672 0.83744 0.83577 0.83093 0.85075 0.92820 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.45 12.84 21.45 0.28 -54.17 16 2 C 0.02 1.38 5.40 84.66 0.46 1.84 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 4 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.59 -32.32 8.76 25.60 0.22 -32.10 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.24 12.26 3.08 29.85 0.09 12.35 16 10 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 11 O -0.57 -29.48 10.34 -148.98 -1.54 -31.02 16 12 C 0.05 1.92 4.40 86.30 0.38 2.30 16 13 N -0.54 -19.72 5.16 -885.55 -4.57 -24.29 16 14 C 0.05 1.86 5.52 86.65 0.48 2.34 16 15 C -0.13 -3.34 6.27 31.78 0.20 -3.14 16 16 C -0.09 -2.08 3.32 -9.41 -0.03 -2.11 16 17 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 18 C 0.08 1.55 4.18 71.98 0.30 1.85 16 19 O -0.33 -7.65 9.99 -92.45 -0.92 -8.58 16 20 C 0.11 2.33 6.69 22.51 0.15 2.48 16 21 C -0.22 -4.04 9.04 22.37 0.20 -3.84 16 22 C -0.09 -1.29 10.04 22.26 0.22 -1.07 16 23 C -0.17 -2.23 10.04 22.28 0.22 -2.01 16 24 C -0.08 -1.23 10.04 22.25 0.22 -1.00 16 25 C -0.17 -3.28 9.99 22.37 0.22 -3.05 16 26 C 0.05 1.39 6.15 86.77 0.53 1.93 16 27 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 28 H 0.35 16.11 7.92 -74.05 -0.59 15.52 16 29 H 0.03 1.17 7.96 -2.39 -0.02 1.16 16 30 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 2.07 5.20 -2.38 -0.01 2.05 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 1.74 8.01 -2.39 -0.02 1.72 16 35 H 0.07 1.28 7.62 -2.39 -0.02 1.26 16 36 H 0.08 1.33 7.67 -2.39 -0.02 1.31 16 37 H 0.14 2.11 6.30 -2.91 -0.02 2.09 16 38 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.05 1.34 7.71 -2.39 -0.02 1.32 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -67.03 347.56 -0.44 -67.47 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.41 Total: 28.42 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 3.88 Total: -23.24 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -4.29 Total: -78.46 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -2.46 Total: -39.60 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -67.03 -0.44 -67.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333921414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.845 kcal (2) G-P(sol) polarization free energy of solvation -67.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds