Wall clock time and date at job start Tue Mar 31 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.53004 * 109.47102 * 240.00042 * 2 1 3 5 5 C 1.50699 * 109.46847 * 65.00007 * 4 2 1 6 6 H 1.08002 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99573 * 180.27665 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 C 1.53002 * 109.47119 * 120.00133 * 2 1 3 14 14 N 1.46904 * 109.46972 * 295.00211 * 13 2 1 15 15 C 1.46896 * 110.99678 * 180.02562 * 14 13 2 16 16 C 1.50704 * 109.46988 * 180.02562 * 15 14 13 17 17 N 1.31256 * 126.20422 * 90.02366 * 16 15 14 18 18 N 1.28804 * 110.03982 * 179.97438 * 17 16 15 19 19 C 1.31388 * 109.26145 * 359.97438 * 18 17 16 20 20 C 1.46895 * 134.26872 * 180.02562 * 19 18 17 21 21 O 1.21745 * 120.78145 * 359.97318 * 20 19 18 22 22 N 1.35144 * 118.43135 * 180.02562 * 20 19 18 23 23 H 0.96998 * 119.85742 * 179.97438 * 22 20 19 24 24 C 1.38152 * 120.29335 * 359.97324 * 22 20 19 25 25 C 1.32817 * 121.84186 * 0.05054 * 24 22 20 26 26 N 1.34480 * 126.19571 * 269.70844 * 16 15 14 27 27 H 1.09006 * 109.46667 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47435 * 299.99531 * 1 2 3 29 29 H 1.08997 * 109.47191 * 60.00378 * 1 2 3 30 30 H 1.08992 * 109.47264 * 305.00181 * 4 2 1 31 31 H 1.09005 * 109.46510 * 184.99768 * 4 2 1 32 32 H 0.97004 * 119.99485 * 179.72881 * 8 7 5 33 33 H 1.08997 * 109.46854 * 55.00154 * 13 2 1 34 34 H 1.09005 * 109.47142 * 175.00317 * 13 2 1 35 35 H 1.00906 * 110.99865 * 303.95343 * 14 13 2 36 36 H 1.09005 * 109.47341 * 299.99518 * 15 14 13 37 37 H 1.08999 * 109.47600 * 60.00179 * 15 14 13 38 38 H 1.07999 * 119.08142 * 180.02562 * 24 22 20 39 39 H 1.08003 * 119.45994 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 1.6500 0.2805 -4.7990 9 14 2.9648 -1.9875 -3.9027 10 1 2.0264 -3.1326 -4.0195 11 1 3.8134 -1.9169 -5.1193 12 1 3.8269 -2.1739 -2.7081 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0374 2.4457 15 6 2.1257 -0.6266 3.6671 16 6 1.7086 0.1785 4.8709 17 7 0.5896 0.0440 5.5436 18 7 0.5537 0.8903 6.5140 19 6 1.6547 1.6072 6.5049 20 6 2.1750 2.6979 7.3401 21 8 1.5326 3.1208 8.2838 22 7 3.3831 3.2213 7.0355 23 1 3.7464 3.9425 7.5730 24 6 4.1032 2.7339 5.9620 25 6 3.6434 1.7486 5.1992 26 7 2.4181 1.1609 5.4539 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7197 -1.2952 31 1 3.1264 -0.7994 -1.2055 32 1 1.9010 -0.0402 -5.6795 33 1 1.6054 -1.7198 1.2951 34 1 3.1264 -0.7995 1.2056 35 1 1.9881 0.9873 2.3967 36 1 1.6920 -1.6247 3.7300 37 1 3.2126 -0.7037 3.6401 38 1 5.0668 3.1663 5.7364 39 1 4.2385 1.3975 4.3691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334401786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:56 Heat of formation + Delta-G solvation = 37.227469 kcal Electronic energy + Delta-G solvation = -22301.003019 eV Core-core repulsion = 18858.213770 eV Total energy + Delta-G solvation = -3442.789249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -44.82844 -41.28555 -38.66419 -38.46175 -36.08068 -35.39901 -34.14207 -32.21419 -31.11979 -29.51536 -27.89779 -26.25816 -25.84305 -24.95238 -23.63282 -22.34780 -20.78880 -20.14987 -19.86688 -18.95310 -18.84010 -18.08867 -17.03331 -16.62840 -16.53262 -16.14297 -16.07468 -15.43602 -15.27504 -14.94605 -14.69007 -14.44408 -13.98951 -13.85134 -13.56837 -13.35467 -13.08048 -12.94648 -12.75817 -12.48279 -12.46328 -12.19521 -12.02941 -11.83927 -11.67841 -11.43413 -11.21449 -11.03767 -10.73828 -10.69961 -9.40275 -9.30599 -8.22224 -6.24816 -0.31112 0.17744 1.07868 1.34376 1.41021 1.41876 1.42603 1.53394 2.03388 2.41707 2.73212 2.98191 3.13711 3.26720 3.45257 3.67272 4.01447 4.14928 4.20928 4.33849 4.44901 4.51675 4.55670 4.66176 4.86234 4.89803 4.95621 4.98580 5.14276 5.27028 5.43004 5.44909 5.45578 5.58155 5.73254 5.77195 5.80889 5.97361 6.33962 6.39769 6.47860 6.84081 7.22854 7.38887 8.94801 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030183 B = 0.002792 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.444187 B =10027.693798 C =10269.130196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.069 4.069 3 H 0.053 0.947 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.031 0.969 7 C -0.003 4.003 8 N -0.958 5.958 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.237 1.237 13 C 0.079 3.921 14 N -0.691 5.691 15 C 0.150 3.850 16 C 0.212 3.788 17 N -0.299 5.299 18 N -0.261 5.261 19 C 0.082 3.918 20 C 0.595 3.405 21 O -0.528 6.528 22 N -0.615 5.615 23 H 0.447 0.553 24 C 0.121 3.879 25 C -0.064 4.064 26 N -0.373 5.373 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.017 0.983 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.345 0.655 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.253 0.747 39 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.701 2.741 23.347 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.088 4.088 3 H 0.071 0.929 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.049 0.951 7 C -0.198 4.198 8 N -0.600 5.600 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.160 1.160 13 C -0.050 4.050 14 N -0.324 5.324 15 C 0.019 3.981 16 C -0.055 4.055 17 N -0.143 5.143 18 N -0.108 5.108 19 C -0.181 4.181 20 C 0.381 3.619 21 O -0.401 6.401 22 N -0.259 5.259 23 H 0.291 0.709 24 C 0.001 3.999 25 C -0.180 4.180 26 N -0.059 5.059 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.269 0.731 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 12.295 2.055 24.112 27.144 hybrid contribution 1.754 0.558 -0.938 2.066 sum 14.049 2.614 23.174 27.226 Atomic orbital electron populations 1.21528 0.95920 1.00634 0.99594 1.20883 0.95770 0.98774 0.93371 0.92863 1.19567 0.96364 0.95642 0.92836 1.21500 1.34129 1.08593 0.91453 0.95113 1.26061 0.97162 1.01094 0.95511 1.70093 1.49315 1.41764 0.98785 0.85658 0.79281 0.79178 0.78483 1.19772 1.21598 1.16000 1.21950 0.98452 0.97379 0.87181 1.60289 1.65171 1.06154 1.00739 1.20443 1.00125 0.96028 0.81458 1.25134 0.89097 0.92000 0.99235 1.74728 1.17581 1.18338 1.03665 1.74527 1.17232 1.03837 1.15184 1.24845 0.93509 1.03947 0.95841 1.16551 0.82178 0.80477 0.82734 1.90971 1.58576 1.61213 1.29379 1.43366 1.15858 1.36508 1.30146 0.70898 1.22474 0.98996 0.93348 0.85082 1.21962 0.86478 1.01587 1.07986 1.43826 1.16284 1.24766 1.21001 0.93728 0.92374 0.95812 0.96449 0.95613 0.92809 0.90423 0.92948 0.83670 0.86833 0.88850 0.73101 0.76390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.07 -2.38 2.48 -10.79 -0.03 -2.41 16 3 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.01 -0.26 3.52 29.85 0.10 -0.16 16 5 C -0.52 -28.74 8.96 25.60 0.23 -28.51 16 6 H 0.03 1.91 7.30 -2.91 -0.02 1.88 16 7 C 0.00 -0.15 5.47 84.66 0.46 0.31 16 8 N -0.96 -59.74 13.96 21.45 0.30 -59.44 16 9 Si 0.95 42.66 27.47 68.60 1.88 44.55 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 13 C 0.08 1.89 5.07 86.30 0.44 2.32 16 14 N -0.69 -14.53 5.94 -517.91 -3.08 -17.61 16 15 C 0.15 2.44 6.21 85.56 0.53 2.97 16 16 C 0.21 4.66 7.63 138.09 1.05 5.72 16 17 N -0.30 -9.33 12.23 -50.37 -0.62 -9.95 16 18 N -0.26 -8.66 12.28 -51.58 -0.63 -9.29 16 19 C 0.08 2.07 8.12 135.97 1.10 3.18 16 20 C 0.59 12.13 7.97 86.45 0.69 12.82 16 21 O -0.53 -14.99 17.99 -4.49 -0.08 -15.07 16 22 N -0.61 -3.99 5.38 -313.50 -1.69 -5.68 16 23 H 0.45 0.09 8.92 -92.71 -0.83 -0.74 16 24 C 0.12 -0.03 11.09 82.52 0.92 0.88 16 25 C -0.06 -0.34 10.87 82.50 0.90 0.55 16 26 N -0.37 -6.55 2.97 -338.63 -1.01 -7.56 16 27 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.06 1.97 7.75 -2.39 -0.02 1.95 16 29 H 0.02 1.01 6.95 -2.39 -0.02 0.99 16 30 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 31 H 0.03 1.04 7.20 -2.38 -0.02 1.02 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.34 6.66 8.72 -89.69 -0.78 5.87 16 36 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.25 -3.16 8.06 -2.91 -0.02 -3.19 16 39 H 0.22 -0.48 8.06 -2.91 -0.02 -0.51 16 Total: -1.00 -88.36 332.96 1.55 -86.81 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -0.57 Total: -0.66 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 7.04 Total: -6.10 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -6.72 Total: -109.52 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.08 Total: -15.07 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.55 kcal Total: -88.36 1.55 -86.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334401786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.035 kcal (2) G-P(sol) polarization free energy of solvation -88.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds