Wall clock time and date at job start Tue Mar 31 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46573 * 2 1 4 4 N 1.46497 * 109.46994 * 119.99513 * 2 1 3 5 5 N 1.40588 * 127.38302 * 297.56419 * 4 2 1 6 6 N 1.28915 * 106.81735 * 179.83222 * 5 4 2 7 7 N 1.28417 * 110.31353 * 0.44150 * 6 5 4 8 8 C 1.31476 * 110.51387 * 359.71416 * 7 6 5 9 9 N 1.38371 * 126.44520 * 179.97438 * 8 7 6 10 10 C 1.46905 * 111.00149 * 109.12820 * 9 8 7 11 11 C 1.50696 * 109.46969 * 298.27534 * 10 9 8 12 12 H 1.07997 * 120.00458 * 5.00484 * 11 10 9 13 13 C 1.37884 * 120.00043 * 185.01352 * 11 10 9 14 14 N 1.31513 * 119.99544 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00102 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46966 * 89.99754 * 15 13 11 17 17 H 1.48504 * 109.47188 * 209.99609 * 15 13 11 18 18 H 1.48499 * 109.47424 * 330.00034 * 15 13 11 19 19 C 1.46894 * 110.99866 * 345.17755 * 9 8 7 20 20 C 1.50704 * 109.47186 * 195.57283 * 19 9 8 21 21 C 1.34515 * 125.78921 * 89.71593 * 20 19 9 22 22 C 1.41384 * 106.84246 * 179.88915 * 21 20 19 23 23 C 1.34516 * 106.83645 * 0.37013 * 22 21 20 24 24 O 1.34302 * 125.79028 * 270.02573 * 20 19 9 25 25 H 1.08996 * 109.47670 * 300.00042 * 1 2 3 26 26 H 1.09006 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46981 * 60.00727 * 1 2 3 28 28 H 1.08996 * 109.47670 * 239.99958 * 2 1 3 29 29 H 1.08996 * 109.47306 * 60.00178 * 3 2 1 30 30 H 1.09002 * 109.46571 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46874 * 299.99339 * 3 2 1 32 32 H 1.09005 * 109.46850 * 58.27172 * 10 9 8 33 33 H 1.08994 * 109.47324 * 178.26722 * 10 9 8 34 34 H 0.97000 * 119.99483 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47660 * 315.57249 * 19 9 8 36 36 H 1.09000 * 109.47775 * 75.57419 * 19 9 8 37 37 H 1.08002 * 126.57931 * 0.02562 * 21 20 19 38 38 H 1.07995 * 126.58351 * 180.16176 * 22 21 20 39 39 H 1.08006 * 125.78435 * 179.74399 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.8154 -0.3213 2.5375 6 7 2.4123 -1.2049 3.2620 7 7 2.9765 -2.0853 2.5166 8 6 2.7662 -1.8171 1.2468 9 7 3.2239 -2.5488 0.1652 10 6 2.1193 -3.2538 -0.4989 11 6 1.4911 -4.2256 0.4664 12 1 1.8199 -4.2542 1.4947 13 6 0.4967 -5.0787 0.0368 14 7 0.0961 -5.0437 -1.2154 15 14 -0.2815 -6.2838 1.2331 16 1 -1.4533 -5.6465 1.8859 17 1 -0.7231 -7.4960 0.4977 18 1 0.7132 -6.6671 2.2670 19 6 4.2778 -3.4874 0.5728 20 6 5.0103 -3.9814 -0.6481 21 6 6.0937 -3.4074 -1.2013 22 6 6.4502 -4.1971 -2.3185 23 6 5.5583 -5.2019 -2.3859 24 8 4.6885 -5.0660 -1.3717 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.3713 -2.5312 -0.8254 33 1 2.5020 -3.7962 -1.3633 34 1 -0.6033 -5.6441 -1.5177 35 1 4.9785 -2.9810 1.2367 36 1 3.8296 -4.3330 1.0945 37 1 6.5964 -2.5157 -0.8568 38 1 7.2776 -4.0248 -2.9909 39 1 5.5439 -5.9847 -3.1299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334450093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:02 Heat of formation + Delta-G solvation = 140.970043 kcal Electronic energy + Delta-G solvation = -24145.476055 eV Core-core repulsion = 20707.185422 eV Total energy + Delta-G solvation = -3438.290633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.33811 -42.08095 -37.48418 -36.18216 -32.88024 -32.54871 -31.38422 -31.01151 -29.68735 -27.30249 -27.06357 -25.20553 -24.21613 -22.70141 -21.30611 -21.17731 -20.36688 -19.77102 -17.37163 -16.80460 -16.41256 -16.14956 -15.95772 -15.22396 -14.78056 -14.45392 -14.26613 -13.84842 -13.28310 -12.98030 -12.89000 -12.50700 -12.41439 -12.30359 -12.21217 -12.05335 -11.86193 -11.52873 -11.46099 -11.31839 -11.04752 -10.92036 -10.65928 -10.43736 -10.26113 -10.10737 -9.78086 -9.56523 -9.52707 -8.64461 -8.19878 -7.96597 -6.27260 -4.35880 1.70955 2.02290 2.40999 2.97031 3.00329 3.20818 3.27424 3.33995 3.43773 4.28014 4.34991 4.61063 4.98049 5.07755 5.09387 5.11345 5.20866 5.35870 5.38054 5.51966 5.58046 5.62899 5.79485 5.83984 5.95618 6.07684 6.10774 6.16650 6.28964 6.30264 6.34874 6.49325 6.54938 6.81419 6.87291 7.09191 7.15623 7.59804 7.64782 7.67621 7.88080 8.70352 9.19246 9.33294 10.79810 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.008164 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.555292 B = 3428.989004 C = 4947.031385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 C -0.157 4.157 4 N -0.376 5.376 5 N -0.106 5.106 6 N -0.043 5.043 7 N -0.370 5.370 8 C 0.464 3.536 9 N -0.462 5.462 10 C 0.189 3.811 11 C -0.562 4.562 12 H 0.069 0.931 13 C 0.076 3.924 14 N -0.883 5.883 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.269 1.269 19 C 0.147 3.853 20 C 0.016 3.984 21 C -0.206 4.206 22 C -0.223 4.223 23 C -0.042 4.042 24 O -0.156 6.156 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.266 0.734 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 6.753 -3.927 10.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 C -0.215 4.215 4 N -0.175 5.175 5 N -0.093 5.093 6 N -0.039 5.039 7 N -0.229 5.229 8 C 0.098 3.902 9 N -0.187 5.187 10 C 0.066 3.934 11 C -0.601 4.601 12 H 0.087 0.913 13 C -0.129 4.129 14 N -0.521 5.521 15 Si 0.720 3.280 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.020 3.980 20 C -0.035 4.035 21 C -0.226 4.226 22 C -0.242 4.242 23 C -0.111 4.111 24 O -0.050 6.050 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 6.743 7.055 -3.018 10.215 hybrid contribution -0.728 -1.146 -0.305 1.391 sum 6.015 5.910 -3.323 9.063 Atomic orbital electron populations 1.22161 0.92732 1.04223 1.02968 1.21538 0.96022 0.93633 0.83698 1.22116 1.01789 0.94214 1.03401 1.51356 1.39295 1.19136 1.07719 1.82306 1.22570 1.20938 0.83491 1.77731 1.04434 0.97991 1.23753 1.74860 1.27433 1.21939 0.98670 1.23028 0.88730 0.87216 0.91198 1.59461 1.13892 1.26846 1.18509 1.20182 0.85481 0.92814 0.94895 1.21650 1.21125 1.20548 0.96768 0.91286 1.24854 0.96148 0.96731 0.95143 1.69919 1.29051 1.38087 1.15001 0.86559 0.79792 0.80541 0.81141 1.20543 1.20890 1.19383 1.20352 0.91702 0.95919 0.90034 1.22135 0.96892 0.88153 0.96337 1.21485 0.99957 1.02642 0.98565 1.21716 1.03071 0.97965 1.01448 1.23985 0.91712 1.02242 0.93129 1.84193 1.46814 1.40558 1.33447 0.91457 0.90796 0.90497 0.86738 0.91201 0.92039 0.90366 0.94592 0.92009 0.92459 0.88167 0.89004 0.83961 0.84038 0.78698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.51 37.16 0.35 -1.97 16 2 C 0.15 2.30 3.14 -67.93 -0.21 2.09 16 3 C -0.16 -1.84 9.46 37.16 0.35 -1.48 16 4 N -0.38 -7.04 3.33 -55.35 -0.18 -7.23 16 5 N -0.11 -2.10 13.85 60.35 0.84 -1.27 16 6 N -0.04 -0.92 13.38 60.35 0.81 -0.12 16 7 N -0.37 -8.06 11.02 30.10 0.33 -7.73 16 8 C 0.46 9.55 5.92 -320.42 -1.90 7.65 16 9 N -0.46 -9.28 4.46 -177.60 -0.79 -10.07 16 10 C 0.19 4.40 4.74 -4.97 -0.02 4.38 16 11 C -0.56 -14.64 7.53 -34.44 -0.26 -14.90 16 12 H 0.07 1.88 6.50 -52.49 -0.34 1.53 16 13 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 14 N -0.88 -24.22 13.29 55.43 0.74 -23.48 16 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 19 C 0.15 2.78 4.83 -4.98 -0.02 2.75 16 20 C 0.02 0.29 6.10 -35.62 -0.22 0.07 16 21 C -0.21 -3.20 10.81 -39.70 -0.43 -3.62 16 22 C -0.22 -3.11 10.91 -39.70 -0.43 -3.54 16 23 C -0.04 -0.62 12.09 29.42 0.36 -0.26 16 24 O -0.16 -2.95 10.09 5.71 0.06 -2.89 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.11 1.75 6.80 -51.93 -0.35 1.40 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.86 6.60 -51.93 -0.34 0.52 16 33 H 0.06 1.56 6.97 -51.93 -0.36 1.19 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.10 1.72 7.77 -51.93 -0.40 1.31 16 36 H 0.09 1.95 6.44 -51.93 -0.33 1.61 16 37 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.20 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -29.82 333.17 -5.82 -35.64 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.08 Total: 2.78 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.53 Total: -6.91 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 1.73 Total: -49.90 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: 0.06 Total: -2.89 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.82 -5.82 -35.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334450093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.609 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds