Wall clock time and date at job start Tue Mar 31 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46573 * 2 1 4 4 N 1.46497 * 109.46994 * 119.99513 * 2 1 3 5 5 N 1.40588 * 127.38302 * 297.56419 * 4 2 1 6 6 N 1.28915 * 106.81735 * 179.83222 * 5 4 2 7 7 N 1.28417 * 110.31353 * 0.44150 * 6 5 4 8 8 C 1.31476 * 110.51387 * 359.71416 * 7 6 5 9 9 N 1.38371 * 126.44520 * 179.97438 * 8 7 6 10 10 C 1.46905 * 111.00149 * 109.12820 * 9 8 7 11 11 C 1.50696 * 109.46969 * 298.27534 * 10 9 8 12 12 H 1.07997 * 120.00458 * 5.00484 * 11 10 9 13 13 C 1.37884 * 120.00043 * 185.01352 * 11 10 9 14 14 N 1.31513 * 119.99544 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00102 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46966 * 89.99754 * 15 13 11 17 17 H 1.48504 * 109.47188 * 209.99609 * 15 13 11 18 18 H 1.48499 * 109.47424 * 330.00034 * 15 13 11 19 19 C 1.46894 * 110.99866 * 345.17755 * 9 8 7 20 20 C 1.50704 * 109.47186 * 195.57283 * 19 9 8 21 21 C 1.34515 * 125.78921 * 89.71593 * 20 19 9 22 22 C 1.41384 * 106.84246 * 179.88915 * 21 20 19 23 23 C 1.34516 * 106.83645 * 0.37013 * 22 21 20 24 24 O 1.34302 * 125.79028 * 270.02573 * 20 19 9 25 25 H 1.08996 * 109.47670 * 300.00042 * 1 2 3 26 26 H 1.09006 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46981 * 60.00727 * 1 2 3 28 28 H 1.08996 * 109.47670 * 239.99958 * 2 1 3 29 29 H 1.08996 * 109.47306 * 60.00178 * 3 2 1 30 30 H 1.09002 * 109.46571 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46874 * 299.99339 * 3 2 1 32 32 H 1.09005 * 109.46850 * 58.27172 * 10 9 8 33 33 H 1.08994 * 109.47324 * 178.26722 * 10 9 8 34 34 H 0.97000 * 119.99483 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47660 * 315.57249 * 19 9 8 36 36 H 1.09000 * 109.47775 * 75.57419 * 19 9 8 37 37 H 1.08002 * 126.57931 * 0.02562 * 21 20 19 38 38 H 1.07995 * 126.58351 * 180.16176 * 22 21 20 39 39 H 1.08006 * 125.78435 * 179.74399 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.8154 -0.3213 2.5375 6 7 2.4123 -1.2049 3.2620 7 7 2.9765 -2.0853 2.5166 8 6 2.7662 -1.8171 1.2468 9 7 3.2239 -2.5488 0.1652 10 6 2.1193 -3.2538 -0.4989 11 6 1.4911 -4.2256 0.4664 12 1 1.8199 -4.2542 1.4947 13 6 0.4967 -5.0787 0.0368 14 7 0.0961 -5.0437 -1.2154 15 14 -0.2815 -6.2838 1.2331 16 1 -1.4533 -5.6465 1.8859 17 1 -0.7231 -7.4960 0.4977 18 1 0.7132 -6.6671 2.2670 19 6 4.2778 -3.4874 0.5728 20 6 5.0103 -3.9814 -0.6481 21 6 6.0937 -3.4074 -1.2013 22 6 6.4502 -4.1971 -2.3185 23 6 5.5583 -5.2019 -2.3859 24 8 4.6885 -5.0660 -1.3717 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.3713 -2.5312 -0.8254 33 1 2.5020 -3.7962 -1.3633 34 1 -0.6033 -5.6441 -1.5177 35 1 4.9785 -2.9810 1.2367 36 1 3.8296 -4.3330 1.0945 37 1 6.5964 -2.5157 -0.8568 38 1 7.2776 -4.0248 -2.9909 39 1 5.5439 -5.9847 -3.1299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334450093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:01 Heat of formation + Delta-G solvation = 123.004444 kcal Electronic energy + Delta-G solvation = -24146.255102 eV Core-core repulsion = 20707.185422 eV Total energy + Delta-G solvation = -3439.069680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.92821 -43.35962 -39.13275 -37.50227 -34.86244 -33.83974 -32.77501 -32.56262 -31.21676 -28.95860 -28.24755 -26.75178 -25.75247 -24.48601 -22.69705 -22.47624 -21.80222 -21.11832 -19.12893 -18.16953 -18.01019 -17.62174 -17.60454 -16.80140 -16.46977 -15.77274 -15.62907 -15.46106 -14.65305 -14.47424 -14.43954 -13.94327 -13.67831 -13.57073 -13.41940 -13.36527 -13.26456 -13.20398 -13.03672 -12.79044 -12.63474 -12.59313 -12.25314 -12.15663 -12.00561 -11.78905 -11.35759 -11.26203 -10.74778 -10.68624 -9.78317 -9.33193 -8.32801 -6.45884 0.09929 0.66317 1.04456 1.27685 1.31296 1.33712 1.41564 1.80708 2.21724 2.29052 2.83228 2.99872 3.26540 3.64623 3.78283 3.85957 3.99882 4.07875 4.25869 4.26416 4.32964 4.52040 4.56065 4.63106 4.65655 4.75975 4.81432 4.86970 4.99782 5.07503 5.12176 5.18918 5.20562 5.22578 5.30771 5.44398 5.58388 5.74920 5.85592 6.00062 6.39399 6.64475 7.24578 7.55431 8.73526 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.008164 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.555292 B = 3428.989004 C = 4947.031385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 C -0.147 4.147 4 N -0.366 5.366 5 N -0.099 5.099 6 N -0.061 5.061 7 N -0.386 5.386 8 C 0.449 3.551 9 N -0.449 5.449 10 C 0.210 3.790 11 C -0.566 4.566 12 H 0.053 0.947 13 C 0.035 3.965 14 N -0.906 5.906 15 Si 0.940 3.060 16 H -0.280 1.280 17 H -0.272 1.272 18 H -0.274 1.274 19 C 0.153 3.847 20 C -0.022 4.022 21 C -0.192 4.192 22 C -0.219 4.219 23 C -0.047 4.047 24 O -0.193 6.193 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.028 0.972 33 H 0.043 0.957 34 H 0.269 0.731 35 H 0.115 0.885 36 H 0.060 0.940 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 7.835 -5.153 12.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 C -0.204 4.204 4 N -0.166 5.166 5 N -0.087 5.087 6 N -0.057 5.057 7 N -0.245 5.245 8 C 0.083 3.917 9 N -0.173 5.173 10 C 0.086 3.914 11 C -0.605 4.605 12 H 0.071 0.929 13 C -0.167 4.167 14 N -0.544 5.544 15 Si 0.766 3.234 16 H -0.206 1.206 17 H -0.197 1.197 18 H -0.199 1.199 19 C 0.027 3.973 20 C -0.072 4.072 21 C -0.212 4.212 22 C -0.238 4.238 23 C -0.115 4.115 24 O -0.089 6.089 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.180 0.820 38 H 0.195 0.805 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.533 8.157 -4.245 11.887 hybrid contribution -0.938 -1.439 0.020 1.718 sum 6.595 6.718 -4.225 10.319 Atomic orbital electron populations 1.22134 0.92070 1.02225 1.04916 1.22009 0.96575 0.95457 0.82043 1.22093 1.01664 0.91602 1.05077 1.51716 1.38085 1.18546 1.08223 1.82209 1.21844 1.20548 0.84058 1.77713 1.05330 0.98500 1.24177 1.74780 1.27942 1.22405 0.99400 1.23090 0.89650 0.87939 0.90991 1.59433 1.12928 1.26629 1.18343 1.19743 0.85843 0.91954 0.93833 1.21783 1.21097 1.21091 0.96493 0.92902 1.25447 0.96724 0.98115 0.96394 1.69975 1.29618 1.38860 1.15930 0.85819 0.78752 0.79312 0.79505 1.20605 1.19696 1.19900 1.20254 0.91384 0.94614 0.91053 1.22036 0.98489 0.89464 0.97259 1.21824 0.98466 1.02697 0.98214 1.22117 1.03594 0.96910 1.01143 1.24815 0.90899 1.03304 0.92455 1.84150 1.48612 1.41302 1.34877 0.91250 0.94604 0.86815 0.87051 0.91317 0.92164 0.86824 0.95375 0.93877 0.92215 0.86731 0.92137 0.81975 0.80549 0.75450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 9.51 71.98 0.68 -3.57 16 2 C 0.14 4.03 3.14 44.99 0.14 4.17 16 3 C -0.15 -3.03 9.46 71.98 0.68 -2.35 16 4 N -0.37 -13.63 3.33 -329.04 -1.09 -14.73 16 5 N -0.10 -3.92 13.85 37.02 0.51 -3.40 16 6 N -0.06 -2.65 13.38 37.02 0.50 -2.16 16 7 N -0.39 -17.12 11.02 -58.70 -0.65 -17.77 16 8 C 0.45 18.72 5.92 260.65 1.54 20.27 16 9 N -0.45 -18.35 4.46 -715.80 -3.20 -21.55 16 10 C 0.21 10.06 4.74 85.55 0.41 10.47 16 11 C -0.57 -30.32 7.53 25.60 0.19 -30.13 16 12 H 0.05 2.98 6.50 -2.91 -0.02 2.96 16 13 C 0.04 1.93 5.46 84.66 0.46 2.39 16 14 N -0.91 -50.25 13.29 21.45 0.28 -49.97 16 15 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 19 C 0.15 5.97 4.83 85.56 0.41 6.38 16 20 C -0.02 -0.80 6.10 24.83 0.15 -0.65 16 21 C -0.19 -5.62 10.81 22.19 0.24 -5.38 16 22 C -0.22 -5.52 10.91 22.19 0.24 -5.27 16 23 C -0.05 -1.32 12.09 66.97 0.81 -0.51 16 24 O -0.19 -7.39 10.09 -2.47 -0.02 -7.41 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.11 3.31 6.80 -2.39 -0.02 3.29 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.03 1.38 6.60 -2.38 -0.02 1.37 16 33 H 0.04 2.24 6.97 -2.39 -0.02 2.23 16 34 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.11 4.00 7.77 -2.39 -0.02 3.98 16 36 H 0.06 2.71 6.44 -2.39 -0.02 2.69 16 37 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 38 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.23 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -65.63 333.17 5.39 -60.24 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.06 Total: 14.68 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.97 Total: -4.19 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.64 Total: -109.57 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.02 Total: -7.41 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.63 5.39 -60.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334450093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.249 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds